mRNA_Ecto-sp13_S_contig9811.21465.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig9811.21465.1
Unique Name	mRNA_Ecto-sp13_S_contig9811.21465.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig9811.21465.1 vs. uniprot
Match: A0A6H5JKF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF0_9PHAE)

HSP 1 Score: 340 bits (871), Expect = 1.440e-109
Identity = 179/193 (92.75%), Postives = 182/193 (94.30%), Query Frame = 2

Query:    2 EKFFIELRSYLENLADSSVREEINQELTKCDFASLTRYYDGRDDLATYTLDTELQRMRYSVVTEDGRRLGGDEREGAEPELEGGGRGGGGGSVLREFLAGRVGDAMLRMANQSIFADMLEA----IQGRLLRPDLEISVISRDCEFFLDFSSGVLEAHSLFEVSTVGGGGPGAPETLEIAHIKGTASVDTGTQ 568
            EKFF+ELRSYLENLAD SVREEINQEL KCDFAS TRYYDGRDDLATYTLDTELQRMRYSVVTEDGRRLGGDEREGAEP LEGGGRG  GGSVLREFLAGRVGDAMLRMANQSIFADMLEA    IQGRLLRPDLEISVISRDCEFFLDFSSGVLEAHSLFEVSTVGGGGPGAPETLEIAHIKGTASVD+ +Q
Sbjct:   75 EKFFVELRSYLENLADPSVREEINQELNKCDFASFTRYYDGRDDLATYTLDTELQRMRYSVVTEDGRRLGGDEREGAEPGLEGGGRGXXGGSVLREFLAGRVGDAMLRMANQSIFADMLEARFRAIQGRLLRPDLEISVISRDCEFFLDFSSGVLEAHSLFEVSTVGGGGPGAPETLEIAHIKGTASVDSRSQ 267

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BLAST of mRNA_Ecto-sp13_S_contig9811.21465.1 vs. uniprot
Match: A0A7S3UTS6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTS6_HETAK)

HSP 1 Score: 82.8 bits (203), Expect = 7.630e-16
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 2

Query:   80 LTKCDFASLTRYYDGRDDLATYTLDTELQRMRYSVVTEDGRRLGGDEREGAEPELEGGGRGGGGGSVLREFLAGRVGDAMLRMANQSIFADMLEAIQGRLLRPDLEISVISRDCEFFLDFSSGVLEAHSLF 472
            L +  F +L  YY+ R +LA YT+ +E+ RM+Y V+    +   G E +G     E           ++E L       ++R ANQS+FAD+L AIQ R LRPDL +++ISRD  F LD     +EA S F
Sbjct:    6 LARRPFRALHAYYEERPELADYTVSSEVPRMKYEVIPAKSQ---GQEHDGPITNTE----------DVQEVLMLHKWSLVVRYANQSLFADLLSAIQDRFLRPDLNVAIISRDSSFKLDLKKETVEAKSEF 123

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BLAST of mRNA_Ecto-sp13_S_contig9811.21465.1 vs. uniprot
Match: W7U7S3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U7S3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.380e-13
Identity = 68/231 (29.44%), Postives = 103/231 (44.59%), Query Frame = 2

Query:    5 KFFI-ELRSYLENLADSSVREEINQELTKCDFASLTRYYDGRDDLATYTLDTELQRMRYSVVTEDGR--------------------RLGGDEREGAEPELEGGGRGGGGGSVLREFLAGRVGDAMLR-------------MANQSIFADMLEAIQGRLLRPDLEISVISRDCEFFLDFSSGVLEAHSLFEVSTVGG-GGPGAPETLEIAHIKGTASVDTGTQVWWGCLVR 592
            KFF  +L+ Y+++LAD  + +EI  +L K  +     Y+  +  +A YTLD EL RM Y +V   G                     R   + + G           G    V + ++      A +R              ANQ +FADMLE IQ R  R DLE+ V+SRD +F +D  +  +E  ++F +S  GG  GP     +E+A ++G   V+   Q    CLV+
Sbjct:   85 KFFQGQLQKYIQDLADPYILQEIESDLAKKHYKDFIEYFTDKPHMAQYTLDHELTRMSYKLVRSSGAPDRHHTYQDDMIVESYQRNSRKDSNYQHGPVDFSVSNPTEGNEFPVPKLYVLAEDDPASIRAIHAICAQNLTWRFANQILFADMLETIQRRFFRADLEVGVVSRDSKFVVDVDADSVEGTAIFHISLAGGTDGP-----VEVARLQGRIKVEVKKQ----CLVQ 306

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig9811.21465.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig9811.21465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5JKF0_9PHAE	1.440e-109	92.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7S3UTS6_HETAK	7.630e-16	38.17	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
W7U7S3_9STRA	2.380e-13	29.44	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig9811:1776..4940+
coding sequence from alignment at Ecto-sp13_S_contig9811:1776..4940+

protein sequence of mRNA_Ecto-sp13_S_contig9811.21465.1

>prot_Ecto-sp13_S_contig9811.21465.1 ID=prot_Ecto-sp13_S_contig9811.21465.1|Name=mRNA_Ecto-sp13_S_contig9811.21465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MRYSVVTEDGRRLGGDEREGAEPELEGGGRGGGGGSVLREFLAGRVGDAM
LRMANQSIFADMLEAIQGRLLRPDLEISVISRDCEFFLDFSSGVLEAHSL
FEVSTVGGGGPGAPETLEIAHIKGTASVDTGTQVWWGCLVRGKCE*

mRNA from alignment at Ecto-sp13_S_contig9811:1776..4940+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig9811.21465.1 ID=mRNA_Ecto-sp13_S_contig9811.21465.1|Name=mRNA_Ecto-sp13_S_contig9811.21465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9811:1776..4940+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAAAGTTCTTTATTGAGCTTCGCAGTTACCTGGAGAACCTTGCAGATT
CTTCCGTACGAGAGGAAATCAACCAGGTTCGATTACATGCCTTCCGCCCT
GCTGTTGCACACTCACTGCTGCTGTTACTTTCGTTGCGGGAGGTTGCGGG
AACTCTCTCCTTGAGTGCGACAGCAACGAGGTCAGCGTGTGTATGCTGGC
ATTTCCGGGCTTGGATTGATGTTGTTGTTGCAACGATGAGGTGGCCATAC
ATTGAGCAAGTTATCGGAGGCGGCGAGAGTGCACGTATCGTCGTTGGATG
TTTTACATGCCACCGGCTCCCGTTGCTTCAGCTACTGAGGTTCAGAACGG
GCCCGGAGATGAGAAACGCCAAAATCGCGTCGAGCCTCAATTTCGCCAAG
TGTTCTGGACTGAAGGACCAGCCGAAGTTGGCCGAGTTTCTAGAGACGGA
GTTCTTCTTCCTTCTATTGTAGGGCTGTCGCATCCTGCTGATTCTCTTGG
TGTCTTTTTGTCTTGTTTCGGGCGAAGAAAACAACACGCCAGTGCAGCAG
CAGTGACTGGTGGGTATTGCCAGCCCGCGGCGGCGCTGGGGCGCGGGGGG
CGCCGCGAAAATAACCTCTCCCCCCCGCTACCAATAAATATTACATGAGA
TGGGTAGGAGGTGGGACCATGGCAGCAGCAGCATCATCAGTGGGACGTTC
CTTATTGGACACGCTCCCCCAGCAACCTCTTGTTTCTTATATCTGGAGGG
TACCGCACGATCATGTTTCTTATTAGGACGTTTCTCATGTTGTGGCCGAG
GTTGACCTAAGCTTCTTAGCCCTGTTTTCTTGTTGTTCGTGAAACGTTGA
GCCTCTTTTTCTTCGCAGAATTTTCTTACCTGCGGGCCCGTTCTGTGTGA
CCAATGTGTGCACGCAACAGCAAGTCATTTGATGTATGATGTACAACTAC
AAATGTCGAAACATAAAACAGAGTTAGGCTGGGCTGTTTCGAGACGCAGA
CTCTCACGATATTTGTGAAAGCTAGGCTCTCAATCGTGAACCTTAGCATT
ACCAAATCGCTGTCGATGAACAGTGCCAATTGGGCCGTTGCCTGCCCCAC
CCTCCGTCCGTTTTTGGTTCTCTCATGCTATGTATGTTCCCGTTCAGTAC
GGTAGTGTACCACACCATTGCAGCGTCTCGCACTGCCCCGCAACCACCAC
CATTCCCCAAACGTTTTTCGCATCCCATCAAACTGGGAGAACAAAAACGG
CGTTGCGTCACGAAAAACGGTCGTTGGTACATGTTGGTCGAATTTTGCGC
TACGCCTTATACAACGAATGCCCCCCCCACCCGCGCGGCAAAGTACAGGA
GCTGACCAAATGCGACTTCGCCTCGCTCACCCGGTACTACGATGGCCGAG
ACGACCTTGCCACCTACACCCTGGACACCGAGTTGCAGCGGATGAGGTAC
TCCGTCGTGACGGAGGACGGCCGGCGTCTCGGCGGGGATGAGCGGGAGGG
AGCGGAACCGGAGCTAGAGGGGGGTGGTCGCGGCGGCGGTGGCGGGAGCG
TTCTGCGAGAGTTTCTAGCCGGGCGAGTTGGCGACGCCATGCTCCGCATG
GCTAACCAGAGCATCTTCGCCGACATGCTCGAGGCACGTTTGTTTGTGAC
GGCGGTGGGATTTTGCGTCTTTTGGTTTGTTCTCGGTCTGCTGTGAGCTC
TTTTCTTCTTGCAGCAGAAACGTTGCAGCGTCACTCCGAAAACCACGCCC
AAGGACGAAACACGAAGCACATGTATGTCTTTGCCTCTGTCTCTGTCTGT
CTATCTGCCTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCCCTTCCTTCCTCCTCCCTCTCTCTCTCTCGCACTCGGAGACTGCCC
TGTCTTCTGTTTCCCGGTGTTCACTGTCGATGCTAGTGAACAAGGAAATA
CACGCAGTAGTGTCGACTGGTTTCGCCTGTCCGGGCCTTGCGTTTGTTGG
TGTCTCGTGGACGCGCGCACCCACCAAACGTCCTTTGTCTGTACGCGCGC
GAAAACGCCTCAAAAAATATCGCACACACACAAGCAGGAAGACACTCTAG
AGCTGAGGTAGTTGTTTATTCACTGACAGACAGGATACCGTGTTTGTGAT
GTGCGGTGCGATTGCGATGTAACCCCATGCCACTCGCAGGCGATCCAGGG
CCGCCTGCTTCGGCCAGACCTCGAGATATCGGTCATCAGCAGGTGAGCAT
CCAACGGTCCCTTCAACGATCCTCTCACCTTCCGAAGGAAGCACTTTCGT
GTCAGTTTGTTCTCGCCGAAGAGAAGGAGGCCGGTCAACGCGTTTTTCCG
TTTCAGATCCGCTGGATTCACACAAATCACTCGACAGTTGGGAGTGAAAT
GCCCGGCTGGGGATAAGGAATGGTGCTCGATCTCAGCCGGTGGCGATGTT
AAACGAGTCCGATCTCAAGACATCGGAGGCGAGGATAAGCATTCGTCGCA
CCCCGCCTCGTCTTCGCTACGCTCTCAAATGTACGAGCGCAGAGATTGCG
AGTTTTTTCTGGACTTCAGCAGCGGCGTCTTGGAGGCGCACTCGCTGTTC
GAGGTTTCCACCGTGGGCGGTGGCGGGCCGGGGGCGCCAGAGACGCTTGA
AATCGCTCACATCAAGGGGACTGCGAGCGTGGATACTGGAACACAGGTGT
GGTGGGGCTGTCTTGTGCGTGGGAAGTGCGAGTGATCTTCATGAATTGGC
GTTGACCGGGCTAACCGACTGAACAATGACAACGCGTCCGTGCCAGCGGG
TACAATTCAAGGTCCCTGGACGGGGACCGAAATGTTTGTGCGGGTGGGAT
GTGCGTGCTAGCCCTACAGCTGCATCACCACCGCTAGCATTCGGAAAGTA
TAACACACAGCGCCTTGTCCCTGCTGTTTCACCATGCGTGCTTTTGGTAC
GCGTTTCGACCTTCGATGACGCGCGGCATTGTCCGGTATACGCGGCACTG
CATTTGGGCACCCATGCCAGAACCTCGCTTCACCTGTCTTCTGTGGCACG
ACGCTCGTGATTCACTTGACTGGACTGTCGTTTGTCCTCGTCTGTAACAA
CTCCCTCCTCCTCCTCCTCCTCCTTCTTGTGAGTCCCTCCTGTCTTCCCT
CCTACGCCCATCTCC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9811:1776..4940+

>mRNA_Ecto-sp13_S_contig9811.21465.1 ID=mRNA_Ecto-sp13_S_contig9811.21465.1|Name=mRNA_Ecto-sp13_S_contig9811.21465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9811:1776..4940+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGTACTCCGTCGTGACGGAGGACGGCCGGCGTCTCGGCGGGGATGA
GCGGGAGGGAGCGGAACCGGAGCTAGAGGGGGGTGGTCGCGGCGGCGGTG
GCGGGAGCGTTCTGCGAGAGTTTCTAGCCGGGCGAGTTGGCGACGCCATG
CTCCGCATGGCTAACCAGAGCATCTTCGCCGACATGCTCGAGGCGATCCA
GGGCCGCCTGCTTCGGCCAGACCTCGAGATATCGGTCATCAGCAGAGATT
GCGAGTTTTTTCTGGACTTCAGCAGCGGCGTCTTGGAGGCGCACTCGCTG
TTCGAGGTTTCCACCGTGGGCGGTGGCGGGCCGGGGGCGCCAGAGACGCT
TGAAATCGCTCACATCAAGGGGACTGCGAGCGTGGATACTGGAACACAGG
TGTGGTGGGGCTGTCTTGTGCGTGGGAAGTGCGAGTGA