mRNA_Ecto-sp13_S_contig9811.21465.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9811.21465.1
Unique NamemRNA_Ecto-sp13_S_contig9811.21465.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9811.21465.1 vs. uniprot
Match: A0A6H5JKF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF0_9PHAE)

HSP 1 Score: 340 bits (871), Expect = 1.440e-109
Identity = 179/193 (92.75%), Postives = 182/193 (94.30%), Query Frame = 2 
Query:    2 EKFFIELRSYLENLADSSVREEINQELTKCDFASLTRYYDGRDDLATYTLDTELQRMRYSVVTEDGRRLGGDEREGAEPELEGGGRGGGGGSVLREFLAGRVGDAMLRMANQSIFADMLEA----IQGRLLRPDLEISVISRDCEFFLDFSSGVLEAHSLFEVSTVGGGGPGAPETLEIAHIKGTASVDTGTQ 568
            EKFF+ELRSYLENLAD SVREEINQEL KCDFAS TRYYDGRDDLATYTLDTELQRMRYSVVTEDGRRLGGDEREGAEP LEGGGRG  GGSVLREFLAGRVGDAMLRMANQSIFADMLEA    IQGRLLRPDLEISVISRDCEFFLDFSSGVLEAHSLFEVSTVGGGGPGAPETLEIAHIKGTASVD+ +Q
Sbjct:   75 EKFFVELRSYLENLADPSVREEINQELNKCDFASFTRYYDGRDDLATYTLDTELQRMRYSVVTEDGRRLGGDEREGAEPGLEGGGRGXXGGSVLREFLAGRVGDAMLRMANQSIFADMLEARFRAIQGRLLRPDLEISVISRDCEFFLDFSSGVLEAHSLFEVSTVGGGGPGAPETLEIAHIKGTASVDSRSQ 267
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BLAST of mRNA_Ecto-sp13_S_contig9811.21465.1 vs. uniprot
Match: A0A7S3UTS6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTS6_HETAK)

HSP 1 Score: 82.8 bits (203), Expect = 7.630e-16
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 2 
Query:   80 LTKCDFASLTRYYDGRDDLATYTLDTELQRMRYSVVTEDGRRLGGDEREGAEPELEGGGRGGGGGSVLREFLAGRVGDAMLRMANQSIFADMLEAIQGRLLRPDLEISVISRDCEFFLDFSSGVLEAHSLF 472
            L +  F +L  YY+ R +LA YT+ +E+ RM+Y V+    +   G E +G     E           ++E L       ++R ANQS+FAD+L AIQ R LRPDL +++ISRD  F LD     +EA S F
Sbjct:    6 LARRPFRALHAYYEERPELADYTVSSEVPRMKYEVIPAKSQ---GQEHDGPITNTE----------DVQEVLMLHKWSLVVRYANQSLFADLLSAIQDRFLRPDLNVAIISRDSSFKLDLKKETVEAKSEF 123
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BLAST of mRNA_Ecto-sp13_S_contig9811.21465.1 vs. uniprot
Match: W7U7S3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U7S3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.380e-13
Identity = 68/231 (29.44%), Postives = 103/231 (44.59%), Query Frame = 2 
Query:    5 KFFI-ELRSYLENLADSSVREEINQELTKCDFASLTRYYDGRDDLATYTLDTELQRMRYSVVTEDGR--------------------RLGGDEREGAEPELEGGGRGGGGGSVLREFLAGRVGDAMLR-------------MANQSIFADMLEAIQGRLLRPDLEISVISRDCEFFLDFSSGVLEAHSLFEVSTVGG-GGPGAPETLEIAHIKGTASVDTGTQVWWGCLVR 592
            KFF  +L+ Y+++LAD  + +EI  +L K  +     Y+  +  +A YTLD EL RM Y +V   G                     R   + + G           G    V + ++      A +R              ANQ +FADMLE IQ R  R DLE+ V+SRD +F +D  +  +E  ++F +S  GG  GP     +E+A ++G   V+   Q    CLV+
Sbjct:   85 KFFQGQLQKYIQDLADPYILQEIESDLAKKHYKDFIEYFTDKPHMAQYTLDHELTRMSYKLVRSSGAPDRHHTYQDDMIVESYQRNSRKDSNYQHGPVDFSVSNPTEGNEFPVPKLYVLAEDDPASIRAIHAICAQNLTWRFANQILFADMLETIQRRFFRADLEVGVVSRDSKFVVDVDADSVEGTAIFHISLAGGTDGP-----VEVARLQGRIKVEVKKQ----CLVQ 306
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9811.21465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JKF0_9PHAE1.440e-10992.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3UTS6_HETAK7.630e-1638.17Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7U7S3_9STRA2.380e-1329.44Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9811contigEcto-sp13_S_contig9811:1776..4940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1037
Hectar predicted targeting categoryother localisation
Exons4
Cds size438
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9811.21465.1prot_Ecto-sp13_S_contig9811.21465.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9811 3217..4510 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464245.0506957-UTR-Ecto-sp13_S_contig9811:1775..18511681464245.0506957-UTR-Ecto-sp13_S_contig9811:1775..1851Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9811 1776..1851 +
1681464245.061213-UTR-Ecto-sp13_S_contig9811:3123..32161681464245.061213-UTR-Ecto-sp13_S_contig9811:3123..3216Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9811 3124..3216 +
1681464245.1085768-UTR-Ecto-sp13_S_contig9811:4510..49401681464245.1085768-UTR-Ecto-sp13_S_contig9811:4510..4940Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9811 4511..4940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464245.072283-CDS-Ecto-sp13_S_contig9811:3216..34081681464245.072283-CDS-Ecto-sp13_S_contig9811:3216..3408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9811 3217..3408 +
1681464245.0850506-CDS-Ecto-sp13_S_contig9811:3964..40171681464245.0850506-CDS-Ecto-sp13_S_contig9811:3964..4017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9811 3965..4017 +
1681464245.0980377-CDS-Ecto-sp13_S_contig9811:4317..45101681464245.0980377-CDS-Ecto-sp13_S_contig9811:4317..4510Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9811 4318..4510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9811.21465.1

>prot_Ecto-sp13_S_contig9811.21465.1 ID=prot_Ecto-sp13_S_contig9811.21465.1|Name=mRNA_Ecto-sp13_S_contig9811.21465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MRYSVVTEDGRRLGGDEREGAEPELEGGGRGGGGGSVLREFLAGRVGDAM
LRMANQSIFADMLEAIQGRLLRPDLEISVISRDCEFFLDFSSGVLEAHSL
FEVSTVGGGGPGAPETLEIAHIKGTASVDTGTQVWWGCLVRGKCE*
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mRNA from alignment at Ecto-sp13_S_contig9811:1776..4940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9811.21465.1 ID=mRNA_Ecto-sp13_S_contig9811.21465.1|Name=mRNA_Ecto-sp13_S_contig9811.21465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9811:1776..4940+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAAAGTTCTTTATTGAGCTTCGCAGTTACCTGGAGAACCTTGCAGATT
CTTCCGTACGAGAGGAAATCAACCAGGTTCGATTACATGCCTTCCGCCCT
GCTGTTGCACACTCACTGCTGCTGTTACTTTCGTTGCGGGAGGTTGCGGG
AACTCTCTCCTTGAGTGCGACAGCAACGAGGTCAGCGTGTGTATGCTGGC
ATTTCCGGGCTTGGATTGATGTTGTTGTTGCAACGATGAGGTGGCCATAC
ATTGAGCAAGTTATCGGAGGCGGCGAGAGTGCACGTATCGTCGTTGGATG
TTTTACATGCCACCGGCTCCCGTTGCTTCAGCTACTGAGGTTCAGAACGG
GCCCGGAGATGAGAAACGCCAAAATCGCGTCGAGCCTCAATTTCGCCAAG
TGTTCTGGACTGAAGGACCAGCCGAAGTTGGCCGAGTTTCTAGAGACGGA
GTTCTTCTTCCTTCTATTGTAGGGCTGTCGCATCCTGCTGATTCTCTTGG
TGTCTTTTTGTCTTGTTTCGGGCGAAGAAAACAACACGCCAGTGCAGCAG
CAGTGACTGGTGGGTATTGCCAGCCCGCGGCGGCGCTGGGGCGCGGGGGG
CGCCGCGAAAATAACCTCTCCCCCCCGCTACCAATAAATATTACATGAGA
TGGGTAGGAGGTGGGACCATGGCAGCAGCAGCATCATCAGTGGGACGTTC
CTTATTGGACACGCTCCCCCAGCAACCTCTTGTTTCTTATATCTGGAGGG
TACCGCACGATCATGTTTCTTATTAGGACGTTTCTCATGTTGTGGCCGAG
GTTGACCTAAGCTTCTTAGCCCTGTTTTCTTGTTGTTCGTGAAACGTTGA
GCCTCTTTTTCTTCGCAGAATTTTCTTACCTGCGGGCCCGTTCTGTGTGA
CCAATGTGTGCACGCAACAGCAAGTCATTTGATGTATGATGTACAACTAC
AAATGTCGAAACATAAAACAGAGTTAGGCTGGGCTGTTTCGAGACGCAGA
CTCTCACGATATTTGTGAAAGCTAGGCTCTCAATCGTGAACCTTAGCATT
ACCAAATCGCTGTCGATGAACAGTGCCAATTGGGCCGTTGCCTGCCCCAC
CCTCCGTCCGTTTTTGGTTCTCTCATGCTATGTATGTTCCCGTTCAGTAC
GGTAGTGTACCACACCATTGCAGCGTCTCGCACTGCCCCGCAACCACCAC
CATTCCCCAAACGTTTTTCGCATCCCATCAAACTGGGAGAACAAAAACGG
CGTTGCGTCACGAAAAACGGTCGTTGGTACATGTTGGTCGAATTTTGCGC
TACGCCTTATACAACGAATGCCCCCCCCACCCGCGCGGCAAAGTACAGGA
GCTGACCAAATGCGACTTCGCCTCGCTCACCCGGTACTACGATGGCCGAG
ACGACCTTGCCACCTACACCCTGGACACCGAGTTGCAGCGGATGAGGTAC
TCCGTCGTGACGGAGGACGGCCGGCGTCTCGGCGGGGATGAGCGGGAGGG
AGCGGAACCGGAGCTAGAGGGGGGTGGTCGCGGCGGCGGTGGCGGGAGCG
TTCTGCGAGAGTTTCTAGCCGGGCGAGTTGGCGACGCCATGCTCCGCATG
GCTAACCAGAGCATCTTCGCCGACATGCTCGAGGCACGTTTGTTTGTGAC
GGCGGTGGGATTTTGCGTCTTTTGGTTTGTTCTCGGTCTGCTGTGAGCTC
TTTTCTTCTTGCAGCAGAAACGTTGCAGCGTCACTCCGAAAACCACGCCC
AAGGACGAAACACGAAGCACATGTATGTCTTTGCCTCTGTCTCTGTCTGT
CTATCTGCCTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCCCTTCCTTCCTCCTCCCTCTCTCTCTCTCGCACTCGGAGACTGCCC
TGTCTTCTGTTTCCCGGTGTTCACTGTCGATGCTAGTGAACAAGGAAATA
CACGCAGTAGTGTCGACTGGTTTCGCCTGTCCGGGCCTTGCGTTTGTTGG
TGTCTCGTGGACGCGCGCACCCACCAAACGTCCTTTGTCTGTACGCGCGC
GAAAACGCCTCAAAAAATATCGCACACACACAAGCAGGAAGACACTCTAG
AGCTGAGGTAGTTGTTTATTCACTGACAGACAGGATACCGTGTTTGTGAT
GTGCGGTGCGATTGCGATGTAACCCCATGCCACTCGCAGGCGATCCAGGG
CCGCCTGCTTCGGCCAGACCTCGAGATATCGGTCATCAGCAGGTGAGCAT
CCAACGGTCCCTTCAACGATCCTCTCACCTTCCGAAGGAAGCACTTTCGT
GTCAGTTTGTTCTCGCCGAAGAGAAGGAGGCCGGTCAACGCGTTTTTCCG
TTTCAGATCCGCTGGATTCACACAAATCACTCGACAGTTGGGAGTGAAAT
GCCCGGCTGGGGATAAGGAATGGTGCTCGATCTCAGCCGGTGGCGATGTT
AAACGAGTCCGATCTCAAGACATCGGAGGCGAGGATAAGCATTCGTCGCA
CCCCGCCTCGTCTTCGCTACGCTCTCAAATGTACGAGCGCAGAGATTGCG
AGTTTTTTCTGGACTTCAGCAGCGGCGTCTTGGAGGCGCACTCGCTGTTC
GAGGTTTCCACCGTGGGCGGTGGCGGGCCGGGGGCGCCAGAGACGCTTGA
AATCGCTCACATCAAGGGGACTGCGAGCGTGGATACTGGAACACAGGTGT
GGTGGGGCTGTCTTGTGCGTGGGAAGTGCGAGTGATCTTCATGAATTGGC
GTTGACCGGGCTAACCGACTGAACAATGACAACGCGTCCGTGCCAGCGGG
TACAATTCAAGGTCCCTGGACGGGGACCGAAATGTTTGTGCGGGTGGGAT
GTGCGTGCTAGCCCTACAGCTGCATCACCACCGCTAGCATTCGGAAAGTA
TAACACACAGCGCCTTGTCCCTGCTGTTTCACCATGCGTGCTTTTGGTAC
GCGTTTCGACCTTCGATGACGCGCGGCATTGTCCGGTATACGCGGCACTG
CATTTGGGCACCCATGCCAGAACCTCGCTTCACCTGTCTTCTGTGGCACG
ACGCTCGTGATTCACTTGACTGGACTGTCGTTTGTCCTCGTCTGTAACAA
CTCCCTCCTCCTCCTCCTCCTCCTTCTTGTGAGTCCCTCCTGTCTTCCCT
CCTACGCCCATCTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9811:1776..4940+

>mRNA_Ecto-sp13_S_contig9811.21465.1 ID=mRNA_Ecto-sp13_S_contig9811.21465.1|Name=mRNA_Ecto-sp13_S_contig9811.21465.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9811:1776..4940+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGTACTCCGTCGTGACGGAGGACGGCCGGCGTCTCGGCGGGGATGA
GCGGGAGGGAGCGGAACCGGAGCTAGAGGGGGGTGGTCGCGGCGGCGGTG
GCGGGAGCGTTCTGCGAGAGTTTCTAGCCGGGCGAGTTGGCGACGCCATG
CTCCGCATGGCTAACCAGAGCATCTTCGCCGACATGCTCGAGGCGATCCA
GGGCCGCCTGCTTCGGCCAGACCTCGAGATATCGGTCATCAGCAGAGATT
GCGAGTTTTTTCTGGACTTCAGCAGCGGCGTCTTGGAGGCGCACTCGCTG
TTCGAGGTTTCCACCGTGGGCGGTGGCGGGCCGGGGGCGCCAGAGACGCT
TGAAATCGCTCACATCAAGGGGACTGCGAGCGTGGATACTGGAACACAGG
TGTGGTGGGGCTGTCTTGTGCGTGGGAAGTGCGAGTGA
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