mRNA_Ecto-sp13_S_contig9808.21461.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9808.21461.1 vs. uniprot
Match: D7FTC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC5_ECTSI) HSP 1 Score: 239 bits (610), Expect = 2.710e-71 Identity = 156/197 (79.19%), Postives = 165/197 (83.76%), Query Frame = 1 Query: 1 RRSSALPTAVTNSPCSADGAASPATFSDDLDGATLCADMDPIVTPSMLGMRHQQAASSPAQIVPTRGEGAIVGGAPVAGTPXXXXXXXXXXXSFATVFPSAAGPWEAGSRPPASSRGGFPGLGEGXXXXXXXXXIDALEAVLNGXXXXXXXXXXXXXSNFVQLDVLADLPEVKSAYLLSQAYEEAYDGKGDNSHNRG 591 RRS+A PTAVTNSPCSADGAAS A FSDDLDGATLCADMDPIVTPSMLGMR QQAAS +Q+VPT G G +VG APVAGTP SFATVFP+AAGPWEAGS PPA SRGGFPGLGE XXXXXX DAL+AVLNGXXXXXXXXXXX S FVQLDVLADLPEVKS YLLSQA+EEAYDGKG++SHNRG Sbjct: 522 RRSTAPPTAVTNSPCSADGAASLAAFSDDLDGATLCADMDPIVTPSMLGMRRQQAASLSSQMVPTMGGGLMVGXAPVAGTPPPASTVSSSWSSFATVFPNAAGPWEAGSGPPACSRGGFPGLGE-VGGXXXXXXXDALDAVLNGXXXXXXXXXXXG-SKFVQLDVLADLPEVKSTYLLSQAFEEAYDGKGNSSHNRG 716
BLAST of mRNA_Ecto-sp13_S_contig9808.21461.1 vs. uniprot
Match: A0A6H5K8X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8X8_9PHAE) HSP 1 Score: 230 bits (586), Expect = 7.620e-69 Identity = 155/204 (75.98%), Postives = 162/204 (79.41%), Query Frame = 1 Query: 4 RSSALPTAVTNSPCSADGAASPATFSDDLDGATLCADMDPIVTPSMLGMRHQQAASSPAQIVPTRGEGAIVGGAPVAGTPXXXXXXXXXXXSFATVFPSAAGPWEAGSRPPASSRGGFPGLGEGXXXXXXXXXIDALEAVLNGXXXXXXXXXXXXXSNFVQLDVLADLPEVKSAYLLSQAYEEAYDGKGDNSHNRGGXXXGNDR 615 RS A PTAV+NSPC+ADGAASP TFSDDLDGATLCADMDPIVTPSML MRHQQAA+ PAQ+VP+RG XXXXXXXXXXXS ATV P+AAGPWEAGSRP ASSRGGFPGL EG IDALEAVLNG XXXXXXX SNFVQLDVLADLPEVKS YLLSQAYEEAYDGKG+NSHNRGG GNDR Sbjct: 361 RSPAPPTAVSNSPCTADGAASPVTFSDDLDGATLCADMDPIVTPSMLDMRHQQAAALPAQMVPSRGGXXXXXXXXXXXXXXXXXXXXXXXXSLATVLPNAAGPWEAGSRPSASSRGGFPGLVEGGGGGS----IDALEAVLNGEXXXXXXXGG---SNFVQLDVLADLPEVKSTYLLSQAYEEAYDGKGNNSHNRGGGGVGNDR 557 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9808.21461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9808.21461.1 >prot_Ecto-sp13_S_contig9808.21461.1 ID=prot_Ecto-sp13_S_contig9808.21461.1|Name=mRNA_Ecto-sp13_S_contig9808.21461.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=205bp RRSSALPTAVTNSPCSADGAASPATFSDDLDGATLCADMDPIVTPSMLGMback to top mRNA from alignment at Ecto-sp13_S_contig9808:1718..2332+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9808.21461.1 ID=mRNA_Ecto-sp13_S_contig9808.21461.1|Name=mRNA_Ecto-sp13_S_contig9808.21461.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9808:1718..2332+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9808:1718..2332+ >mRNA_Ecto-sp13_S_contig9808.21461.1 ID=mRNA_Ecto-sp13_S_contig9808.21461.1|Name=mRNA_Ecto-sp13_S_contig9808.21461.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9808:1718..2332+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |