mRNA_Ecto-sp13_S_contig98025.21458.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig98025.21458.1
Unique NamemRNA_Ecto-sp13_S_contig98025.21458.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig98025.21458.1 vs. uniprot
Match: A0A6H5KIS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS3_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.100e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 MFDCHAHLTDSSLAEGLHQTLLEAEEAGVTGIVAVSESLDDA 126
            MFDCHAHLTDSSLAEGLHQTLLEAE AGVTGIVAVSESLDDA
Sbjct:   46 MFDCHAHLTDSSLAEGLHQTLLEAEAAGVTGIVAVSESLDDA 87
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BLAST of mRNA_Ecto-sp13_S_contig98025.21458.1 vs. uniprot
Match: D7FNX7_ECTSI (TatD DNase domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX7_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 7.120e-17
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 MFDCHAHLTDSSLAEGLHQTLLEAEEAGVTGIVAVSESLDDA 126
            MFDCHAHLTDSSLAEGL QTLLEAE AGVTGIVAVSESLDDA
Sbjct:    1 MFDCHAHLTDSSLAEGLQQTLLEAEAAGVTGIVAVSESLDDA 42
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98025.21458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIS3_9PHAE1.100e-1797.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNX7_ECTSI7.120e-1795.24TatD DNase domain containing 3 n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig98025contigEcto-sp13_S_contig98025:144..269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score80.1
Seed ortholog evalue2.7e-13
Seed eggNOG ortholog2880.D7FNX7
Preferred nameTATDN3
Model size126
KEGG koko:K03424
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.hydrolase activity, acting on ester bonds
EggNOG OGsCOG0084@1,KOG3020@2759
Ec32 ortholog descriptionTatD family
Ec32 orthologEc-10_004740.1
Cds size126
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464244.4797165-CDS-Ecto-sp13_S_contig98025:143..2691681464244.4797165-CDS-Ecto-sp13_S_contig98025:143..269Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98025 144..269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig98025.21458.1prot_Ecto-sp13_S_contig98025.21458.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig98025 144..269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig98025.21458.1

>prot_Ecto-sp13_S_contig98025.21458.1 ID=prot_Ecto-sp13_S_contig98025.21458.1|Name=mRNA_Ecto-sp13_S_contig98025.21458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
MFDCHAHLTDSSLAEGLHQTLLEAEEAGVTGIVAVSESLDDA
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mRNA from alignment at Ecto-sp13_S_contig98025:144..269-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig98025.21458.1 ID=mRNA_Ecto-sp13_S_contig98025.21458.1|Name=mRNA_Ecto-sp13_S_contig98025.21458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98025:144..269- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGACTGCCACGCGCACCTCACGGACTCCTCTCTAGCGGAAGGACT
GCATCAGACCCTCTTAGAGGCAGAGGAAGCGGGGGTGACCGGAATCGTTG
CCGTGTCTGAGTCTCTCGACGACGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig98025:144..269-

>mRNA_Ecto-sp13_S_contig98025.21458.1 ID=mRNA_Ecto-sp13_S_contig98025.21458.1|Name=mRNA_Ecto-sp13_S_contig98025.21458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98025:144..269- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGACTGCCACGCGCACCTCACGGACTCCTCTCTAGCGGAAGGACT
GCATCAGACCCTCTTAGAGGCAGAGGAAGCGGGGGTGACCGGAATCGTTG
CCGTGTCTGAGTCTCTCGACGACGCT
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