mRNA_Ecto-sp13_S_contig98.21456.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig98.21456.1 vs. uniprot
Match: D7FKW0_ECTSI (ATG13 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW0_ECTSI) HSP 1 Score: 1226 bits (3171), Expect = 0.000e+0 Identity = 632/693 (91.20%), Postives = 647/693 (93.36%), Query Frame = 1 Query: 1 MSSDRSKCEQVVYELLCKVAELVVSSRVSLVQAQRREVNSKFSLHVQELAFVRSSMKAWENNLTLPLGIDIFWVEGGGGDGAPRRELLERWEIMYEAQDAAEGKSAQLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQSRDVSLVHSRDDTGFSLYPLRDGGSCGSGLDFSACGGQDHAGHSGRKSTSCYAFKPLKAPHGSVKVVCHYRRGVDSKAYQHGQTNTLTAAPDMTTSLIPDYVTDEYERNTAASRMPAAEVNHDWPKLPSTVEDGASGPDGAVDTYGQHAGKKVSKENTSTMHWPSPELGHGYAEKRIHVGPRQGPAPFLTPGPHRGRPLG-HDVMMEPLELGPNAEIHARGPPLLPAPPVRQENEDLICVSAQTLSGASGCTESNRGNSHCSNGMIRTAEGGEDGVADRDRALMRPYRRNSISESLSTPSGSSGSRITAGHRHSTATEYTPPFSYNTTGPDLGERNIALGQPLVSFSPPFDAAHVGQRGHDSTISIRVHSSRPRTPVPTVLEVLPESPFGLRKAGTQPPGVPGTAVASSSRPFLPPRLDYSSQEPTFAATSAGIDRIELPFAAEAQDDGVSAAVDSSLYGVEAGFDSSAAPSTLYALCSAASSKSIFLADPS-EYAEHTPVGFLQERDANEAPSPGAAYS---GNLPQEVIVRSLEEDLEGFRLFQQEVLEQRR 2064
MSSDRSKCEQVVYELLCKVAELVVSSRVSL+Q QRREVNSKFSLHVQELAFVR+SMKAWENNLTLPLGIDIFWVEGGG DGAPRRELLERWEIMYEAQDAAEGKSAQLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQSRDVSL SRDDTGFSLYPLRDGGSCGSGLDFSA GG+DHAG SGRKSTSCY FKPLKAPHGSVKV+CHYRRGVDSKAYQHGQTNT+TAAPDMTTSLIPDYVTDEYERN AASRMPA EVNHDWPKLPST EDGAS PDGAVD YGQHAG KVSKENTS MHWPSPELGHGYAEKR H+GPRQGPAPFLTPGPHRGRPLG HDVMMEPLELGPNAEIHARGPP PAPPVRQENEDLI VSAQTLSGASG TESN +SHCSNGMIRTAEGGEDGVADR RALMRPYRRNSISESLSTPSGS GSRITAGHRHSTA EYTPPFSYNTTGPDLGERNIALGQPLVSFSPPF+A HVGQRGHDST SIRVHSS PR PVPT+LEVLPESPF LRK GTQPPGVPGTAVASSSRPFLP RLD SSQEPTFAATSAGIDR ELPFAAE QDDGVSA+VDSS+ GVE G DSSAAPSTLYALCSAASSKSIFLADPS EYAE T VGFLQERD+N+ PSPGA Y+ G+LPQEVIVRSLEEDLEGFRLFQQEVLEQRR
Sbjct: 1 MSSDRSKCEQVVYELLCKVAELVVSSRVSLIQPQRREVNSKFSLHVQELAFVRNSMKAWENNLTLPLGIDIFWVEGGG-DGAPRRELLERWEIMYEAQDAAEGKSAQLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQSRDVSLADSRDDTGFSLYPLRDGGSCGSGLDFSASGGEDHAGRSGRKSTSCYTFKPLKAPHGSVKVICHYRRGVDSKAYQHGQTNTVTAAPDMTTSLIPDYVTDEYERNAAASRMPATEVNHDWPKLPSTPEDGASVPDGAVDAYGQHAGNKVSKENTSMMHWPSPELGHGYAEKRTHIGPRQGPAPFLTPGPHRGRPLGRHDVMMEPLELGPNAEIHARGPPHFPAPPVRQENEDLIRVSAQTLSGASGRTESNHVDSHCSNGMIRTAEGGEDGVADRGRALMRPYRRNSISESLSTPSGSGGSRITAGHRHSTAIEYTPPFSYNTTGPDLGERNIALGQPLVSFSPPFNAVHVGQRGHDSTFSIRVHSSGPRAPVPTLLEVLPESPFALRKEGTQPPGVPGTAVASSSRPFLP-RLDCSSQEPTFAATSAGIDRTELPFAAELQDDGVSASVDSSVCGVEGGLDSSAAPSTLYALCSAASSKSIFLADPSSEYAEQTAVGFLQERDSNDVPSPGAEYTSTAGSLPQEVIVRSLEEDLEGFRLFQQEVLEQRR 691
BLAST of mRNA_Ecto-sp13_S_contig98.21456.1 vs. uniprot
Match: K3WW66_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WW66_GLOUD) HSP 1 Score: 95.9 bits (237), Expect = 5.440e-17 Identity = 73/230 (31.74%), Postives = 109/230 (47.39%), Query Frame = 1 Query: 13 RSKCEQVVYELLCKVAELVVSSRVSLV-QAQRREVN--SKFSLHVQELAFVRSSMKAWENNLTLPLGIDIFWVEGGGGDGAPRRELLERWEIMYEAQDAAEGKS--------------------AQLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQSRDVSL-VHSRDDTGFSLYPLRDGGSCGSGLDFSACGGQDHAGHSGRKSTSCYAFKPLKAPHGSVKVVCHYR 630
R+K +QVV E L K AEL++ SRV+ +A R N ++F+L ++E+ FVR +M AW ++ LPL I I+ ++ GG D +R LLE+W +MY A D + S QL+ K+ +LLR LYS +RLLPA+ + KR +S +HS + +D S Y+F P+ P G +K+ YR
Sbjct: 1 RAKTDQVVLEFLYKAAELIIQSRVNFQSEADHRRGNRRARFNLDIEEVQFVRDAMLAWREDVHLPLTIGIY-LDSGGDD---QRVLLEQWSVMY-APDGGDADSYSGLRRNSSSHLTGAARDVIQQLKEVCKKISVLLRALYSFMRLLPAHRLFKRSYPSTLSYEIHSMSSAFLETHFEKD------------------------VPVSRYSFVPITTPFGFLKISTVYR 201
BLAST of mRNA_Ecto-sp13_S_contig98.21456.1 vs. uniprot
Match: A0A6H5K5Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Z1_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 7.410e-16 Identity = 37/49 (75.51%), Postives = 38/49 (77.55%), Query Frame = 1 Query: 166 MKAWENNLTLPLGIDIFWVEGGGGDGAPRRELLERWEIMYEAQDAAEGK 312
MKAWE +LTLPLGIDIFWVEGGGGDGAP RELLERWEI A K
Sbjct: 1 MKAWEKDLTLPLGIDIFWVEGGGGDGAPGRELLERWEITCVVAYGANAK 49
BLAST of mRNA_Ecto-sp13_S_contig98.21456.1 vs. uniprot
Match: A0A7S3NNL2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNL2_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 6.040e-15 Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 1 Query: 4 SSDRSKCEQVVYELLCKVAELVVSSRV-SLVQAQRREVNSKFSLHVQELAFVRSSMKAWENNLTLPLGIDIFWVEGGGGDG-----APRRELLERWEIMYEAQDAA------EGKSAQLRHFFKRSIILLRTLYSLVRLLPA 393
+S SKCEQV++E + K AE+V+ +R+ S Q RR +F++ V E+ VR M+ W +L LPL I I W E + + LLERW+I +E A+ E Q+R +KR +ILLRTLYS + LLPA
Sbjct: 4 NSAASKCEQVMFEAVAKAAEIVLLNRIHSPSQLGRRLGRQRFNMDVDEVDVVRGMMEYWRRDLHLPLRILIVWRENNSTEKKNILQGTKPRLLERWDIQFELASASLSGPNEEELLVQVRSVWKRVVILLRTLYSRMLLLPA 145
BLAST of mRNA_Ecto-sp13_S_contig98.21456.1 vs. uniprot
Match: A0A6G0XV64_9STRA (ATG13 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV64_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.700e-13 Identity = 85/288 (29.51%), Postives = 129/288 (44.79%), Query Frame = 1 Query: 1 MSSDRSKCEQVVYELLCKVAELVVSSRVSLVQAQRREVNSKFSLHVQELAFVRSSMKAWENNLTLPLGIDIFWVEGGGGDGAPRRELLERWEIMYEAQDAAEGKSA---QLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQSRDVSLVHSRDDTGFSLYPLRDGGSCGSGLDFSACGGQD---HAGHSGRKSTSCYAFKPLKAPHGSVKVVCHYRRGVD---SKAYQHGQTNTLTAAPDMTT------------------SLIPDYVTDEYERNTAASRMPAAEVNH 783
+S+ + K +QVV E L K E+V+ SR + R ++F+L +QEL VR +M+ +++N+T P+ +DIF GA LLERW I Y + A+ QLR +R ILLR +Y L R+LPA+ V R++++ ++D G L GL + A G D + Y+F P+ P G++++ YR+ D + Q + TAA TT ++I DYV A MPAA H
Sbjct: 40 VSTGKKKTDQVVLEFLYKTVEVVLLSRAYFQPSTPRR--ARFNLDIQELVHVRDAMRMYKDNVTQPVLVDIFM-------GAT---LLERWHISYTSGMQAQSPVDVINQLREVCRRIGILLRAVYCLARILPAFPVGDRLKTQ-------QEDLGHPLV----------GLQY-AIGSVDTDMQVQFDAAEPKQRYSFVPIDTPFGTLQLSVLYRKRNDDLLAAIEQMAVADHPTAAATTTTITRELDNVSLKSSTSLENAIIQDYVPTA---PVAVKSMPAALPKH 294
BLAST of mRNA_Ecto-sp13_S_contig98.21456.1 vs. uniprot
Match: R1FDE6_EMIHU (ATG13 domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FDE6_EMIHU) HSP 1 Score: 81.3 bits (199), Expect = 3.610e-13 Identity = 85/328 (25.91%), Postives = 130/328 (39.63%), Query Frame = 1 Query: 10 DRSKCEQVVYELLCKVAELVVSSRVSLVQAQRREVNSKFSLHVQELAFVRSSMKAWENNLTLPLGIDIFWVEG--------GGGDGAPRRELLERWEIMYEAQDAAEGKSAQLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQSRDVSLVHSRDDTGFSLYPLRDGGSCGSGLDFSACGGQDHAGHSGRKSTSC-------------YAFKPLKAPHGSVKVVCHYRRGVDSKAYQHGQTNTLTAAPD--MTTSLIPDYVTDEYERNTAASRMPAAEVNHDWPKLPSTVEDGASGPDGAVDTYGQHAGKKVSKENTSTMHWPSPELG 924
+ K + VV + K ELV+ +RV L R N F+L +E+A VR ++ W+ ++ PL +DIF G P LLERW + YE A ++ F+KR ++LLR+L + +RL+PA+ R+ S L H+ D L F C G H G S S +AF P + HG +++ YR + + D M+ +LI +Y+ E R P +T+++ A G DG+ +G + S H PSP G
Sbjct: 2 EAQKLQLVVRNCVQKTLELVLRARVPL---GRGTPNHWFNLESEEVACVRDRLEGWKQRISQPLQLDIFIDTSSSAVRAAVGAQPNEPNLVLLERWTLRYEPAPHAP-EAIGWPTFYKRFMVLLRSLAAFLRLMPAH----RLASSLGRLGHASDAPA---------------LGFRVCIGGPHGGRSSEASPEAAPLDFAAGVSPQQHAFSPPDSTHGKLRIAVSYRPPSLFTRTARPAAAAVRCSSDRMMSAALIANYLPTEGARQ---------------PPAVATLDEAALGADGSNPRFG------LLPRPASAPHAPSPPAG 285
BLAST of mRNA_Ecto-sp13_S_contig98.21456.1 vs. uniprot
Match: A0A485LN19_9STRA (Aste57867_23525 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LN19_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 4.070e-13 Identity = 65/219 (29.68%), Postives = 102/219 (46.58%), Query Frame = 1 Query: 1 MSSDRSKCEQVVYELLCKVAELVVSSRVSLVQAQRREVNSKFSLHVQELAFVRSSMKAWENNLTLPLGIDIFWVEGGGGDGAPRRELLERWEIMYEAQDAAEGKSA-----QLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQSRDVSLVHSRDDTGFSLYPLRDGGSCGSGLDFSACGGQDHAGHSGRKSTSCYAFKPLKAPHGSVKVVCHYRRGVD 642
+S+ + K +QVV E L K E+V+ SR R ++F+L +QEL VR S++ + +N+ PL +DIF LLERW I Y + + KS QLR +R ILLRT+Y LVR+LPA+ V R++++ L H +++ A + Y+F P++ P G +++ YR+ D
Sbjct: 38 LSTGQKKTDQVVLEFLYKTVEVVLLSRAYFQPTTPRR--ARFNLDIQELTHVRESLRPYRDNVGQPLFLDIFMGS----------TLLERWHISYTS--GMQSKSPVDVINQLREVCRRIGILLRTVYCLVRILPAFPVGTRLKTQQEDLGHVVAGLQYAV---------------GAVDADMRQQFDAAEPKQRYSFVPIETPFGMIQLSVLYRKRND 227
BLAST of mRNA_Ecto-sp13_S_contig98.21456.1 vs. uniprot
Match: A0A2P6NID3_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NID3_9EUKA) HSP 1 Score: 80.9 bits (198), Expect = 3.220e-12 Identity = 42/140 (30.00%), Postives = 81/140 (57.86%), Query Frame = 1 Query: 13 RSKCEQVVYELLCKVAELVVSSRVSLVQAQRR------EVNSKFSLHVQELAFVRSSMKAWENNLTLPLGIDIFWVEGGGGDGAPRRE--LLERWEIMYEAQDAAEGKSAQLRHFFKRSIILLRTLYSLVRLLPAYSVHK 408
R+K EQ+V EL K+ ++++ SR+ +VQ + ++N F+L ++E+ + + W N+ +PL I +F+ G P E +LE+W+I E + ++ ++ +KR ++L+R+LYS +R++P YSV +
Sbjct: 13 RTKTEQIVRELYVKLTQVILQSRIPMVQQAAKNGTGKVKINKWFNLELEEVENITQELTPWRQNMYIPLCIKVFFNSSRGMAQHPYEERVMLEKWKIQLEPH-TGQRENVEVPVLYKRLVLLVRSLYSYLRVVPTYSVFR 151
BLAST of mRNA_Ecto-sp13_S_contig98.21456.1 vs. uniprot
Match: A0A5N6P6K0_9ASTR (ATG13 domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P6K0_9ASTR) HSP 1 Score: 79.3 bits (194), Expect = 1.050e-11 Identity = 70/293 (23.89%), Postives = 118/293 (40.27%), Query Frame = 1 Query: 7 SDRSKCEQVVYELLCKVAELVVSSRVSLVQA-----------QRREVNSKFSLHVQELAFVRSSMKAWENNLTLPLGIDIFWVE-------GGGGDGAPRRELLERWEIMYEAQDAAEGK--SAQLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQSRDVSLVHSRDDTGFSLYPLRDGGSCGSGLDFSACGGQDHAGHSGRKSTSCYAFKPLKAPHGSVKVVCHYRRGVDSKAYQHGQTNTLTAAPDMTTSLIPDYV----TDEYER---NTAASRMPAAEVN-----HDW 789
++ + +Q+V + L K +V+ SRV +++ Q ++ + F+L + E + W NL P+ IDI V+ G G G ++ERW + YE S + +K+SIILLR+LY+++RLLPAY ++++ S+ G CG + + S + Y F P++A HG + + YR + L + +I DYV TD + N AA+ P + + H W
Sbjct: 9 NEHGRNDQIVSQFLLKSLHIVLESRVPSIRSNGRGGSLSSGGQVKKSDKWFNLALGERLTPLDCLSFWHRNLMEPMIIDIVLVQDMPDLGQNGSGYGTLVETVIERWVVQYEYSRTPPSHQLSESYKKTYKKSIILLRSLYTMMRLLPAYRAYRKLSSK--------------------GRDCGFDIVYKVSSFSAPFSRSEEQMMKLYTFVPVEAQHGHLSISVRYRESLSDF--------NLETSASFPPEIIIDYVGSPATDPFRAFPDNKAATSFPNRDTSRLQRPHSW 273
BLAST of mRNA_Ecto-sp13_S_contig98.21456.1 vs. uniprot
Match: A0A328E0K3_9ASTE (ATG13 domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328E0K3_9ASTE) HSP 1 Score: 77.4 bits (189), Expect = 3.940e-11 Identity = 46/144 (31.94%), Postives = 78/144 (54.17%), Query Frame = 1 Query: 10 DRSKCEQVVYELLCKVAELVVSSRVSLVQAQRREVNSK-----FSLHVQELAFVRSSMKAWENNLTLPLGIDIFWVEGGGGDGAPRRELLERWEIMYEAQ--DAAEGKSAQLRHFFKRSIILLRTLYSLVRLLPAYSVHKRIQS 420
+ + EQ+V + L K +V+ SRV ++ R K F+L + + ++ +W NLT P+ IDI V+ G G+ ++ERW + YE + ++G + + +K+ IILLR+LYS+ +LLPAY K++ S
Sbjct: 10 EHGRFEQIVSQFLSKSLHIVLDSRVPSIRNHGRTGEVKKSDKWFNLVLGDRPSALENLNSWHRNLTEPMNIDIVLVKDKPGSGSSLT-VIERWIVQYECRRTSISQGVDSSHKKTYKKLIILLRSLYSMTKLLPAYKAFKKLCS 152 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98.21456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig98.21456.1 >prot_Ecto-sp13_S_contig98.21456.1 ID=prot_Ecto-sp13_S_contig98.21456.1|Name=mRNA_Ecto-sp13_S_contig98.21456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=689bp MSSDRSKCEQVVYELLCKVAELVVSSRVSLVQAQRREVNSKFSLHVQELAback to top mRNA from alignment at Ecto-sp13_S_contig98:32978..38524- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig98.21456.1 ID=mRNA_Ecto-sp13_S_contig98.21456.1|Name=mRNA_Ecto-sp13_S_contig98.21456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5547bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98:32978..38524- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig98:32978..38524- >mRNA_Ecto-sp13_S_contig98.21456.1 ID=mRNA_Ecto-sp13_S_contig98.21456.1|Name=mRNA_Ecto-sp13_S_contig98.21456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2067bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98:32978..38524- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |