mRNA_Ecto-sp13_S_contig98.21455.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig98.21455.1 vs. uniprot
Match: D7FKW1_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW1_ECTSI) HSP 1 Score: 454 bits (1168), Expect = 1.000e-160 Identity = 248/251 (98.80%), Postives = 250/251 (99.60%), Query Frame = 1 Query: 1 MSLNSVASHDPFYAVRDEVSAKIEYIKVRLERFQDLLNNTNTAQNRDFQDLRKGLTKEVKGADAQLRDLRRTVEYVENNRDSFVHIDNAELSERKTFLSDSKQVLLRASDALDGQQTKEKMAQDDRSEMAKYRSKGDLGARTEVERDNTEHVLDHQSRVRMQLARQDEDLEELGTHVERVGETATVINEELRSQNRLLTALDEDMDEATESMNFVMGRLGKLLKTKSKCQIWTILLLSFILIILVLMLIYV 753 MSLNSVASHDPFYAVRDEVSAKIEYIKVRLERFQDLLNNTNTAQNRDFQDLRKGLTKEVKGADAQLRDLRRTVEYVENNRDSF HIDNAELSERKTFLSDSKQVLLRASDALDGQQTKEKMAQDDRSEMAKYRSKGDLGARTEVERDNTEH+LDHQSRVRMQLARQDEDLEELGTHVERVGETATVINEELRSQNRLLTALD+DMDEATESMNFVMGRLGKLLKTKSKCQIWTILLLSFILIILVLMLIYV Sbjct: 1 MSLNSVASHDPFYAVRDEVSAKIEYIKVRLERFQDLLNNTNTAQNRDFQDLRKGLTKEVKGADAQLRDLRRTVEYVENNRDSFAHIDNAELSERKTFLSDSKQVLLRASDALDGQQTKEKMAQDDRSEMAKYRSKGDLGARTEVERDNTEHILDHQSRVRMQLARQDEDLEELGTHVERVGETATVINEELRSQNRLLTALDDDMDEATESMNFVMGRLGKLLKTKSKCQIWTILLLSFILIILVLMLIYV 251
BLAST of mRNA_Ecto-sp13_S_contig98.21455.1 vs. uniprot
Match: A0A7S3K6G0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K6G0_9STRA) HSP 1 Score: 199 bits (507), Expect = 3.370e-60 Identity = 111/232 (47.84%), Postives = 164/232 (70.69%), Query Frame = 1 Query: 7 LNSVASHDPFYAVRDEVSAKIEYIKVRLERFQDLLNNTNTAQNRDFQDLRKGLTKEVKGADAQLRDLRRTVEYVENNRDSFVHIDNAELSERKTFLSDSKQVLLRASDALDGQQTKEKMAQDDRSEMAKYRSKGDLGARTEVERDNTEHVLDHQSRVRMQLARQDEDLEELGTHVERVGETATVINEELRSQNRLLTALDEDMDEATESMNFVMGRLGKLLKTKSKCQIWTI 702 L S ASHDPFY V+DE+ K+E I RLER+++LL NTA + +F++++KGL++EVK A+AQ++DL TVEYVE +R++F HID+ EL ERK F++ +K L A D L G + + K+ D++ ++A R G+ GA+T++E NT+ + + ++ R + QDE+LE L + V+RV AT I+ EL++Q+RL+ L+ +MDE TE MNFVMG+L KLLKTK CQ+ TI Sbjct: 12 LMSAASHDPFYVVKDELVNKLESISSRLERYENLLWKINTAASVEFKEVKKGLSREVKAAEAQIKDLALTVEYVEKDRNAFAHIDDRELDERKKFIATTKNKLSGARDVLTGPKARAKIEADEKQQLAATR--GNYGAKTDIEMANTDFIHNQHAQTRTIMQEQDENLEHLDSAVDRVHRMATEIHGELKTQSRLIGDLENEMDETTEKMNFVMGKLAKLLKTKDTCQLLTI 241
BLAST of mRNA_Ecto-sp13_S_contig98.21455.1 vs. uniprot
Match: A0A7S2S2M2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2M2_9STRA) HSP 1 Score: 198 bits (503), Expect = 9.370e-60 Identity = 109/233 (46.78%), Postives = 160/233 (68.67%), Query Frame = 1 Query: 19 ASHDPFYAVRDEVSAKIEYIKVRLERFQDLLNNTNTAQNRDFQDLRKGLTKEVKGADAQLRDLRRTVEYVENNRDSFVHIDNAELSERKTFLSDSKQVLLRASDALDGQQTKEKMAQDDRSEMAKYRSKGDLGARTEVERDNTEHVLDHQSRVRMQLARQDEDLEELGTHVERVGETATVINEELRSQNRLLTALDEDMDEATESMNFVMGRLGKLLKTKSKCQIWTILLLSF 717 A+ DPFY V+DE++AK+ I+ RL+ F+ LL T+TA N+DF+D +K L +++K A+ QL+DL TVE+V+ +R F HID+ +L +R T+++++KQ L G K K+A D R ++ K + +LGA + +NT + Q++ RM + +QDEDLEELG V+RV + A IN EL++QNR+L L+ D+DEATE MNFVMG+L KLLKTK CQIWT+++L F Sbjct: 3 AAQDPFYVVKDELTAKVHTIQKRLQTFKRLLETTDTATNQDFKDSKKALGRDLKAAEKQLKDLTLTVEFVQKDRAQFAHIDDYDLQQRTTYIAETKQALGEIKAYYSGDDVKRKLADDMRKDIMKQPT-SNLGATSSDAMENTHFIQGQQAQQRMIMEQQDEDLEELGYAVDRVNDMAVGINTELKTQNRMLKDLESDLDEATEKMNFVMGKLAKLLKTKDTCQIWTVIILFF 234
BLAST of mRNA_Ecto-sp13_S_contig98.21455.1 vs. uniprot
Match: A0A7S2FMQ2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FMQ2_9STRA) HSP 1 Score: 189 bits (479), Expect = 3.900e-56 Identity = 104/231 (45.02%), Postives = 160/231 (69.26%), Query Frame = 1 Query: 19 ASHDPFYAVRDEVSAKIEYIKVRLERFQDLLNNTNTAQNRDFQDLRKGLTKEVKGADAQLRDLRRTVEYVENNRDSFVHIDNAELSERKTFLSDSKQVLLRASDALDGQQTKEKMAQDDRSEMAKYRSKGDLGARTEVERDNTEHVLDHQSRVRMQLARQDEDLEELGTHVERVGETATVINEELRSQNRLLTALDEDMDEATESMNFVMGRLGKLLKTKSKCQIWTILLL 711 AS DPFY V+DE+S KI+ I + +F +LL++TNTA++ +F+D R+ L K++K A+ QLRDL TV+ V+ +R+ F HID+ EL +R ++ +++ L G++ K KM D+R+E+ + + LGA E +NT+ + + Q++ +M + +QDE+LEELG V+RV + A INEEL+ QN++L L+ED+DEA E MNFVMG++ KLLKTK CQIWT+++L Sbjct: 3 ASVDPFYVVKDELSMKIDAITGKTVKFLELLDSTNTAKSPEFKDARRSLGKDLKSAEKQLRDLTFTVDMVQKDREQFAHIDDYELEQRDAYIKKARKNLNEMKSTYQGERVKRKMIADERAEI-ESKPMSSLGATNSDEAENTQFIHEQQAQGQMIIRQQDEELEELGYAVDRVNDMAVGINEELKVQNQMLKTLEEDIDEAAEKMNFVMGKMAKLLKTKDTCQIWTVIIL 232
BLAST of mRNA_Ecto-sp13_S_contig98.21455.1 vs. uniprot
Match: F0XYP6_AURAN (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYP6_AURAN) HSP 1 Score: 182 bits (462), Expect = 1.960e-53 Identity = 104/249 (41.77%), Postives = 174/249 (69.88%), Query Frame = 1 Query: 7 LNSVASHDPFYAVRDEVSAKIEYIKVRLERFQDLLNNTNT-AQNRDFQDLRKGLTKEVKGADAQLRDLRRTVEYVENNRDSFVHIDNAELSERKTFLSDSKQVLLRASDALDGQQTKEKMAQDDRSEMAKYRSKGDLGARTEVERDNTEHVLDHQSRVRMQLARQDEDLEELGTHVERVGETATVINEELRSQNRLLTALDEDMDEATESMNFVMGRLGKLLKTKSKCQIWTILLLSFILIILVLMLIY 750 L S ++DPF+ V+DE+ AK+E I++R+ +F LL T A ++ F+D RK L +E++GA+ QL+DL TV+YVE +R +F HID+ ELSER+ F++ ++ + A DA+ G + + KM DD++ +A + GD GA T++E NT+ + ++R + + QD++LE+L V+RV A+ I+ EL++Q+R++ ++ ++DE TE MNFVMG+L KLLKTK CQ+WTI+ L+ +L+++V+++I+ Sbjct: 10 LMSGGANDPFHVVKDELVAKLESIELRVGQFNGLLYGPGTTAGSKPFRDCRKALGREIRGAEGQLKDLGLTVDYVERDRGAFSHIDDRELSERRDFVAAARSRVANARDAVGGPRARAKMDADDKAAVAAQQ--GDYGASTDLEMANTDFIHGQRARTQATMREQDDNLEQLDGAVDRVHAMASEIHGELQTQSRMINDMESELDETTEKMNFVMGKLSKLLKTKDTCQLWTIVALTVVLVVMVMLVIW 256
BLAST of mRNA_Ecto-sp13_S_contig98.21455.1 vs. uniprot
Match: A0A836CAK7_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAK7_9STRA) HSP 1 Score: 175 bits (444), Expect = 7.890e-51 Identity = 100/228 (43.86%), Postives = 148/228 (64.91%), Query Frame = 1 Query: 19 ASHDPFYAVRDEVSAKIEYIKVRLERFQDLLNNTNTAQNRDFQDLRKGLTKEVKGADAQLRDLRRTVEYVENNRDSFVHIDNAELSERKTFLSDSKQVLLRASDALDGQQTKEKMAQDDRSEMAKYRSKGDLGARTEVERDNTEHVLDHQSRVRMQLARQDEDLEELGTHVERVGETATVINEELRSQNRLLTALDEDMDEATESMNFVMGRLGKLLKTKSKCQIWTI 702 +S DP++ RD+V+AKI ++ + + ++ T +RD ++L+ + ++++ A QLRDL+RTV+YVE +R SF HID+AEL +RK FL+ K++L +G + K+ ++ ++ YR KGDLGA++ E DNTE + D +S +ARQD+DLEELG HV+RVG A INEELR Q R+L L+ED+ ESM VMG + K+LKTK + QIW I Sbjct: 6 SSGDPYFVARDQVAAKIAAVQAKHAQLNAAIDKARTLTDRDVKELKPVVARDLETAKGQLRDLKRTVDYVEKDRASFPHIDDAELRDRKAFLNAQKKILNAIVADTEGDKLAAKLEKETAAKRDSYR-KGDLGAKSNAEADNTEFIHDQRSNRMAHIARQDQDLEELGEHVDRVGMHAETINEELRDQGRMLDDLNEDIVTTHESMGMVMGAMAKILKTKDRAQIWLI 232
BLAST of mRNA_Ecto-sp13_S_contig98.21455.1 vs. uniprot
Match: A0A4D9DA67_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA67_9STRA) HSP 1 Score: 165 bits (418), Expect = 5.650e-47 Identity = 101/245 (41.22%), Postives = 153/245 (62.45%), Query Frame = 1 Query: 22 SHDPFYAVRDEVSAKIEYIKVRLERFQDLLNNTNTAQNRDFQDLRKGLTKEVKGADAQLRDLRRTVEYVENNRDSFVHIDNAELSERKTFLSDSKQVLLRASDALDGQQTKEKMAQDDRSEMAKYRSKGDLGARTEVERDNTEHVLDHQ-SRVRMQLARQDEDLEELGTHVERVGETATVINEELRSQNRLLTALDEDMDEATESMNFVMGRLGKLLKTKSKCQIWTILLLSFILIILVLMLIYV 753 + DPF+A R+E+ ++++YI+ + E F LL TNTA + +DLR L ++++ A+ Q R+L + V VE NR F HIDN E+ +R+ F++ KQ L++ + L+ K KM+ D R + G G RT ++ Q SR + L QDE LEELGT V+RVG A +N+EL +QNR+L L+ +++ E M+FVMG+L KLLKTK K Q+W I++L+ +LI+L+L+ IYV Sbjct: 2 AQDPFFAAREELRSRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCRDIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRRDPSRSFDG-GAEGHRTGRSGKRANDFIEEQRSRQHLMLCEQDEGLEELGTAVDRVGRMADAMNQELNAQNRMLGDLEVEVENTNEQMSFVMGKLSKLLKTKDKYQLWLIIVLTVVLIVLILLTIYV 245
BLAST of mRNA_Ecto-sp13_S_contig98.21455.1 vs. uniprot
Match: A0A7S3ZTE6_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTE6_9STRA) HSP 1 Score: 155 bits (392), Expect = 5.100e-42 Identity = 98/249 (39.36%), Postives = 153/249 (61.45%), Query Frame = 1 Query: 7 LNSVASHDPFYAVRDEVSAKIEYIKVRLERFQDLLNNTNTAQ-NRDFQDLRKGLTKEVKGADAQLRDLRRTVEYVENNRDSFVHIDNAELSERKTFLSDSKQVLLRASDALDGQQTKEKMAQDDRSEMAKYRSKGDLGARTEVERDNTEHVLDHQSRVRMQLARQDEDLEELGTHVERVGETATVINEELRSQNRLLTALDEDMDEATESMNFVMGRLGKLLKTKSKCQIWTILLLSFILIILVLMLIY 750 L + A DPF+ V+DE+ K+ I+ R+ F LL + T N F++ +K + +EV+ A+AQLRDL TVEYVE +R +F HI++AEL++RK F+ +K+ + A DA+ G + + K+ D+++ +A R G A ++E NT + +RV + QDE LE+L EL +Q R+L +++++DE TE MNFVMG+L KLLKTK CQ+WTI+ L+ +LI++V ++IY Sbjct: 93 LMASAGGDPFHVVKDELVVKLRSIEGRVATFTTLLYGSGTTHGNPRFREAKKAVAREVRAAEAQLRDLALTVEYVERDRGAFPHINDAELNQRKAFVDKAKRDVASARDAVAGPRARAKIEADEQAALASQR--GAYDASGDLEMQNTAFIHSSHARVAATIQEQDEGLEQLDGAXXXXXXXXXXXXXELSAQARMLDDMEDELDETTEKMNFVMGKLSKLLKTKDTCQLWTIVALTVVLIVMVFLVIY 339
BLAST of mRNA_Ecto-sp13_S_contig98.21455.1 vs. uniprot
Match: A0A1E7FKP6_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKP6_9STRA) HSP 1 Score: 150 bits (379), Expect = 1.780e-40 Identity = 90/235 (38.30%), Postives = 148/235 (62.98%), Query Frame = 1 Query: 28 DPFYAVRDEVSAKIEYIKVRLERFQDLLNNTNTA-QNRDFQDLRKGLTKEVKGADAQLRDLRRTVEYVENNRDSFVHIDNAELSERKTFLSDSKQVLLRASDALDGQQTKEKMAQDDRSEMAKYRSKGDLGARTEVERDNTEHVLDHQSRVRMQLARQDEDLEELGTHVERVGETATVINEELRSQNRLLTALDEDMDEATESMNFVMGRLGKLLKTKSKCQIWTILLLSFILII 729 DP++ R ++ K+E L F +++ T+TA + +++D +K L + +K A++ LRD+++TV+ VEN+RD F HID+++ ER++ + S+ + A D ++ K+K+ D+R+ G LGA+ + ER NT+ +LD+Q++ M + QDE L+ELG V RVGE A I EE+ QN++L LDEDM A E + VMG+L K + TK++ Q+ TI++L+ I II Sbjct: 61 DPYFVFRSDLQNKLESADEFLADFLRIVHETDTAVSSLEYRDSKKQLKRHLKSAESTLRDVQKTVQAVENDRDKFPHIDDSQFFERRSLVETSRSRIQHAKDEMNSDIIKKKVLSDERNRAVARSGDGLLGAKNDEERQNTDFILDNQAQSSMLMQEQDETLDELGNAVLRVGEMAGTIGEEIGQQNKMLNDLDEDMTTAEEELGMVMGKLAKFMGTKNRGQLKTIVILTLIAII 295
BLAST of mRNA_Ecto-sp13_S_contig98.21455.1 vs. uniprot
Match: A0A7S4J3Q8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J3Q8_9STRA) HSP 1 Score: 148 bits (373), Expect = 3.840e-39 Identity = 90/250 (36.00%), Postives = 159/250 (63.60%), Query Frame = 1 Query: 4 SLNSVASHDPFYAVRDEVSAKIEYIKVRLERFQDLLNNTNTAQNR-DFQDLRKGLTKEVKGADAQLRDLRRTVEYVENNRDSFVHIDNAELSERKTFLSDSKQVLLRASDALDGQQTKEKMAQDDRSEMAKYRSKGDLGARTEVERDNTEHVLDHQSRVRMQLARQDEDLEELGTHVERVGETATVINEELRSQNRLLTALDEDMDEATESMNFVMGRLGKLLKTKSKCQIWTILLLSFILIILVLMLIY 750 SL + DPF+ R++++ K++ + L R+ ++++T+TA N + +D +K L +++K A++ L+DL+ TV VE+NR F HI++AEL +R+ F++ S+ + +A ++ K K+ D+R + A R G+ GA+++ +R++ V D ++ ++ L +QDE LE+L V RVG+ A I+EEL QN++L +++ E + VMG+L K+LKTK+KCQI TIL L+ ++ IL ++IY Sbjct: 99 SLVTAVEDDPFHVFREDLTRKLDLVDEALARYLRVVDSTDTAVNTAEVKDAKKHLKRQIKNAESALKDLQTTVTMVESNRKKFFHINDAELHDRRKFVTRSRDCISKAKKDMNSDDVKAKILTDERRKAA--RRAGEAGAQSDRDRESASFVADQHAQAQIMLQQQDETLEDLDDAVVRVGQMAGEIHEELGQQNKMLQEMEDXXXXXXEKLGMVMGKLAKMLKTKNKCQIGTILCLTLVVFILFFLVIY 346 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98.21455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig98.21455.1 >prot_Ecto-sp13_S_contig98.21455.1 ID=prot_Ecto-sp13_S_contig98.21455.1|Name=mRNA_Ecto-sp13_S_contig98.21455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=252bp MSLNSVASHDPFYAVRDEVSAKIEYIKVRLERFQDLLNNTNTAQNRDFQDback to top mRNA from alignment at Ecto-sp13_S_contig98:26778..32172+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig98.21455.1 ID=mRNA_Ecto-sp13_S_contig98.21455.1|Name=mRNA_Ecto-sp13_S_contig98.21455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5395bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98:26778..32172+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig98:26778..32172+ >mRNA_Ecto-sp13_S_contig98.21455.1 ID=mRNA_Ecto-sp13_S_contig98.21455.1|Name=mRNA_Ecto-sp13_S_contig98.21455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=756bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98:26778..32172+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |