mRNA_Ecto-sp13_S_contig98.21452.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: D7FKW4_ECTSI (Chloroplast 50S ribosomal protein L15 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKW4_ECTSI) HSP 1 Score: 453 bits (1166), Expect = 4.880e-161 Identity = 229/232 (98.71%), Postives = 231/232 (99.57%), Query Frame = 1 Query: 1 MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTSGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE 696 MKATLATTALFCVG ANAFFAPTAFTGQQLTAGTSAPSRTT+GVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNG+DEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE Sbjct: 1 MKATLATTALFCVGVANAFFAPTAFTGQQLTAGTSAPSRTTTGVTMKIFDWKRRESEDGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGLDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDEEEEE 232
BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A835Z4H5_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H5_9STRA) HSP 1 Score: 279 bits (714), Expect = 2.590e-92 Identity = 147/227 (64.76%), Postives = 169/227 (74.45%), Query Frame = 1 Query: 1 MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTSGVTMKIFDWKRRESED-GLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSM 678 M++ L A + A + F +AF GQ L A T S S ++MKIFDWKRRES+ L + ++ TL P+PGSR R RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L+ALN EGATV+FE+L G +TKT RWHKVVG EL GLTVQAH FT SA EAIE GGKCQLLSPTTNE++ M Sbjct: 1 MRSFLYLAACLVIAAVSDAFTASAFHGQALCAATGKAS---SSISMKIFDWKRRESDSFNLAVTELSPATLTPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGATVSFETLHEQGTLTKTSLRWHKVVGNGELNVRGLTVQAHAFTGSAKEAIENAGGKCQLLSPTTNEIVDM 224
BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A836CHQ3_9STRA (Chloroplast 50S ribosomal protein L15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ3_9STRA) HSP 1 Score: 267 bits (683), Expect = 1.380e-87 Identity = 138/215 (64.19%), Postives = 162/215 (75.35%), Query Frame = 1 Query: 37 VGAANAFFAPTAFTGQQLTAGTSAPSRTTSGVTMKIFDWKRRESEDG-LVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSM 678 V A+A+ A +AF GQ + T S + V+MKIFDWKRR+ + + ++ TL P+PGSR R RKGRGI+AGQGASCGFGMRGQ+SRSGPGVRAGFEGGQQPLYRRLPK VGRPMGPGHTKK+F+LI L+ALN EG+TV+FE+L G +TKT +WHKVVG EL LTVQAH FT SA EAIE GGKCQLLSPTTNE++ M Sbjct: 14 VAVADAWVATSAFNGQAVGTHTCKAS---NAVSMKIFDWKRRDDDSANTAVKELSPATLVPSPGSRHRKARKGRGISAGQGASCGFGMRGQRSRSGPGVRAGFEGGQQPLYRRLPKFVGRPMGPGHTKKEFHLITLEALNSAAEGSTVSFETLHEQGTLTKTSLKWHKVVGNGELNVKNLTVQAHAFTGSAKEAIEGAGGKCQLLSPTTNEIVDM 225
BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A7S1BKP2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKP2_9STRA) HSP 1 Score: 246 bits (629), Expect = 2.180e-79 Identity = 128/192 (66.67%), Postives = 145/192 (75.52%), Query Frame = 1 Query: 112 SRTTSGVTMKIFDWKRRESEDGLVLDR----VAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGM-ELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 672 S +TS +TMK+FDWKRRE+++ + D +D LKPAPGSR R KRKGRGIAAGQGA+CGFGMRGQKSRSG RAGFEGGQQPLYRRLPK VG+PMGPGH+K +NLIKLD LNG EG+TVNF SL +G +TK+K HKVV G E GL VQAH FT SA AIE GGKC+LLSPTT VL Sbjct: 31 STSTSSLTMKVFDWKRREADESAINDAENFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKLDELNGAAEGSTVNFASLFESGDITKSKVGIHKVVTGKKEFTAKGLIVQAHAFTSSAQTAIEGAGGKCELLSPTTGAVL 222
BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A7S1BF06_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BF06_9STRA) HSP 1 Score: 244 bits (623), Expect = 1.770e-78 Identity = 126/190 (66.32%), Postives = 143/190 (75.26%), Query Frame = 1 Query: 118 TTSGVTMKIFDWKRRESEDGLVLDR----VAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGM-ELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 672 T +G TMK+FDWKRRE+++ + D +D LKPAPGSR R KRKGRGIAAGQGA+CGFGMRGQKSRSG RAGFEGGQQPLYRRLPK VG+PMGPGH+K +NLIK D +NG EG+TV+F SL AG VTK K+ HKVV G E G+TVQAH FT SA AIE GGKC+LLSPTT VL Sbjct: 33 TATGPTMKVFDWKRREADESAINDAETFVFTLDNLKPAPGSRHRKKRKGRGIAAGQGATCGFGMRGQKSRSGRPTRAGFEGGQQPLYRRLPKFVGKPMGPGHSKTVYNLIKTDEINGAAEGSTVSFGSLFEAGDVTKAKYGIHKVVTGKKEFSAKGVTVQAHAFTNSARAAIEGAGGKCELLSPTTGAVL 222
BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A7S2K337_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K337_9STRA) HSP 1 Score: 243 bits (619), Expect = 6.500e-78 Identity = 125/205 (60.98%), Postives = 148/205 (72.20%), Query Frame = 1 Query: 73 FTGQQLTAGTSAPSRTTSGVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLS 675 F+G QL TS S + MK++DWKRRE+++ + D +D +KPAPGSR+R RKGRGI+AGQGA+CGFGMRGQK+RSG R GFEGGQQPLYRRLPK VGRP GPGH K +N IKL LNG EG+TVNF+SL TK+K+ HK+VGG EL GLTVQAH FTKSA EAIEA GGKC+LL TT EV++ Sbjct: 23 FSGNQLQCTTSNQSN----LNMKLYDWKRREADESAINDVENFEFTLDNIKPAPGSRKRFTRKGRGISAGQGATCGFGMRGQKARSGRPTRPGFEGGQQPLYRRLPKFVGRPTGPGHEKTIYNTIKLSELNGAAEGSTVNFDSLFETKATTKSKYSIHKIVGGTELTAKGLTVQAHAFTKSAREAIEASGGKCELLKATTGEVIA 223
BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A448ZNF8_9STRA (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNF8_9STRA) HSP 1 Score: 238 bits (606), Expect = 6.100e-76 Identity = 125/206 (60.68%), Postives = 154/206 (74.76%), Query Frame = 1 Query: 73 FTGQQLTAGTSAPSRTTSGVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETT-GLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLS 675 FTG +L A +++ + T S MK+ DWKRR +++ + D +D+L+PAPGSR++ RKGRGI+AGQGA+CGFGMRGQKSRSG R GFEGGQQPLYRRLPK GRPMGPGHTKK++NLI+LDALNG+ G+T NFESL + VTK+KH HKVV G E T +TVQAH FTKSA AIE GGKC+LL P+T EV++ Sbjct: 21 FTGTRLAAVSTSSANTLS---MKLHDWKRRTADESDINDVENYEFTLDSLRPAPGSRKKKTRKGRGISAGQGATCGFGMRGQKSRSGRPTRPGFEGGQQPLYRRLPKFTGRPMGPGHTKKEYNLIQLDALNGVAPGSTCNFESLFESKAVTKSKHSTHKVVVGREEFTAKDITVQAHAFTKSARAAIEGAGGKCELLKPSTGEVIA 223
BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A7S2V549_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V549_9STRA) HSP 1 Score: 236 bits (601), Expect = 5.170e-75 Identity = 137/230 (59.57%), Postives = 168/230 (73.04%), Query Frame = 1 Query: 28 LFCVGAANAFFAPTAFTGQQLTA--GTSAPSRTTSGVTMKIFDWKRRESEDGLVLDRVAVD--TLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTK----TKHRWH-------KVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 672 L +GAA AF +P++F GQQL GTS T+ V+MKI+DWK R+ ++ +D V L+PAPGS +RHKRKGRGIAAGQGASCGFGMRGQKSRSG VR GFEGGQ PLYRR+PK+ GRPMGPGH K ++ L++ + L+G++EG+TVNFESLRAAGK+ K TKH+ + KVVGG +L T GLTVQAH FT SA +AIE GGKC +LS TTN+ L Sbjct: 9 LAILGAAVAF-SPSSFGGQQLARVQGTS-----TNTVSMKIYDWKNRQ-KNWKHIDEVEFTHTNLRPAPGSTKRHKRKGRGIAAGQGASCGFGMRGQKSRSGKSVRPGFEGGQTPLYRRIPKIRGRPMGPGHQKIEYALMQFNFLDGVEEGSTVNFESLRAAGKMPKQGKRTKHKRNSGNHQLIKVVGGRDLNTKGLTVQAHAFTASAKKAIEEAGGKCVVLSKTTNKPL 231
BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A1E7FLQ7_9STRA (Ribosomal protein L15 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FLQ7_9STRA) HSP 1 Score: 234 bits (598), Expect = 1.470e-74 Identity = 116/187 (62.03%), Postives = 142/187 (75.94%), Query Frame = 1 Query: 127 GVTMKIFDWKRRESEDGLVLD----RVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETT-GLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVL 672 G+TMK++DWKRR++++ + D +D L+PAPGSR+ RKGRGIAAGQGA+CGFGMRGQKSRSG R GFEGGQ PLYRRLPK GRPMGPGH+KKQ+N+IKLD LN +D G+ NFESL AG VTK+K+ HK+V G + T +TVQAH FTK+A AIE GGKC+LL P+T EV+ Sbjct: 44 GMTMKLYDWKRRDADESAINDVESFEFTLDNLRPAPGSRKSRTRKGRGIAAGQGATCGFGMRGQKSRSGRPTRPGFEGGQTPLYRRLPKFTGRPMGPGHSKKQYNIIKLDQLNNVDSGSVCNFESLFTAGSVTKSKYDTHKIVVGKDDFTAKDITVQAHAFTKTARTAIEDAGGKCELLKPSTGEVI 230
BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Match: A0A5J4Z048_PORPP (50S ribosomal protein L15 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z048_PORPP) HSP 1 Score: 233 bits (595), Expect = 3.040e-74 Identity = 125/223 (56.05%), Postives = 151/223 (67.71%), Query Frame = 1 Query: 25 ALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTSGVTMKIFDWKRRESE---DGLVLDRVAVDTLKPAPGSRQRHKRKGRGIAAGQGASCGFGMRGQKSRSGPGVRAGFEGGQQPLYRRLPKLVGRPMGPGHTKKQFNLIKLDALNGMDEGATVNFESLRAAGKVTKTKHRWHKVVGGMELETTGLTVQAHGFTKSAVEAIEAKGGKCQLLSPTTNEVLSMDE 684 A F + +AFFA + A R +MK+FDWK+R +E + ++V T+ PAPGSR+R RKGRG+AAGQG SCGFGMRGQKSRSG R GFEGGQ PLYRRLPK VGRPMGPGHTK +NL+KLD LN EG V F++L +GK+TK K + K++GG EL LTV+AH FT SAVEAIEA GGKC LLSPTT E ++M+E Sbjct: 2 AAFVGASGSAFFAAQRTASVNVAVCGKAGVRRAVAPSMKVFDWKKRGAEAYSGRAEMGEMSVTTVIPAPGSRKRKTRKGRGVAAGQGRSCGFGMRGQKSRSGNPTRPGFEGGQTPLYRRLPKYVGRPMGPGHTKTMYNLVKLDILNKCAEGEVVTFDALVESGKMTKGKFKLAKIMGGAELTVKNLTVKAHAFTSSAVEAIEAAGGKCVLLSPTTGEDINMEE 224 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98.21452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig98.21452.1 >prot_Ecto-sp13_S_contig98.21452.1 ID=prot_Ecto-sp13_S_contig98.21452.1|Name=mRNA_Ecto-sp13_S_contig98.21452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp MKATLATTALFCVGAANAFFAPTAFTGQQLTAGTSAPSRTTSGVTMKIFDback to top mRNA from alignment at Ecto-sp13_S_contig98:9484..14328+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig98.21452.1 ID=mRNA_Ecto-sp13_S_contig98.21452.1|Name=mRNA_Ecto-sp13_S_contig98.21452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4845bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98:9484..14328+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig98:9484..14328+ >mRNA_Ecto-sp13_S_contig98.21452.1 ID=mRNA_Ecto-sp13_S_contig98.21452.1|Name=mRNA_Ecto-sp13_S_contig98.21452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98:9484..14328+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |