mRNA_Ecto-sp13_S_contig9794.21445.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9794.21445.1 vs. uniprot
Match: D7FWS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS5_ECTSI) HSP 1 Score: 697 bits (1800), Expect = 1.910e-241 Identity = 383/452 (84.73%), Postives = 393/452 (86.95%), Query Frame = 3 Query: 525 MFTVRVSKTPTDRIKIGFFCLEKESSLTIGGDDDSWVPGDSMAEALARYTFAIPGGTRRTPIRASGTKAFFLERNDGRTCRYVKLTAPPASSSGL-AAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPDEKTAAA------KAATVAKLSSMSQSWAGERGGRRGSVSGCSISRMTDGSESVCTSTPATDADGSERGSCDEAGXXXXXXXXXXXXXXXXXXXXXDGDGDVQSVLDDDCLVSIARR--NSLHHADTATAGGGAGDSDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRLQISCWRKGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSAVAPACAAAAGASDSPSTCV-----GSGGSVASSCDIVLSQR*CGSGGA 1838
+FT+RVSKTPTDRI IGFFCLEKESSLTIGGDDDSWVPGDSMAEALARYTFA+PG T+RTP+RASGTKAFFLERNDGRTCRYVKLTAPPASS G+ AAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPDE+TAAA KAATVAKLSS+SQSWAG RGG RGSVSGCS SRMTDGSESVCTSTPATDADGSE GSCDEAG XXXXXXXXXXXXX DGDGDV+SVLDD CL SIARR NSLHHADT TAG GAG DASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRR QISCWR GRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSA AP SGGSVASS D V SQ+ CGSGGA
Sbjct: 86 IFTIRVSKTPTDRINIGFFCLEKESSLTIGGDDDSWVPGDSMAEALARYTFAVPGSTKRTPMRASGTKAFFLERNDGRTCRYVKLTAPPASSPGVVAAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPDEETAAAXXXXXXKAATVAKLSSLSQSWAGGRGGPRGSVSGCSTSRMTDGSESVCTSTPATDADGSEAGSCDEAGGSSEXXXXXXXXXXXXXSSDGDGDGDVESVLDDVCLASIARRKGNSLHHADTGTAGSGAGAGDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRQQISCWRNGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSAAAPXXXXXXXXXXXXXXXXXXXXXASGGSVASSFDFVFSQQQCGSGGA 537
BLAST of mRNA_Ecto-sp13_S_contig9794.21445.1 vs. uniprot
Match: A0A6H5JVR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR9_9PHAE) HSP 1 Score: 685 bits (1767), Expect = 6.430e-235 Identity = 369/404 (91.34%), Postives = 379/404 (93.81%), Query Frame = 3 Query: 525 MFTVRVSKTPTDRIKIGFFCLEKESSLTIGGDDDSWVPGDSMAEALARYTFAIPGGTRRTPIRASGTKAFFLERNDGRTCRYVKLTAPPASSSGLAAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPDEKTAAA--KAATVAKLSSMSQSWAGERGGRRGSVSGCSISRMTDGSESVCTSTPATDADGSERGSCDEAGXXXXXXXXXXXXXXXXXXXXXDGDGDVQSVLDDDCLVSIARR--NSLHHADTATAGGGAGDSDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRLQISCWRKGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSAVAPAC 1724
+FT+RVSKTPT RIKIGFFCLEKES+LTIGGD+DSWVPGDSMAEALARYTFAIPG TRRTPIRASGTKAFFLERNDGRTCRYVKLTAPPASS G AAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSP+E+TAAA KAATV KLSS+SQSWAG RGGRRGSVSG S SR+TDGSESVCTSTPATDADGSE SCDEAG XXXXXXXXXXXXXXXXXX DG GD++SVLDD CL SIARR NSLHHADTATAG GAG DASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRR QISCWRKGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSA APAC
Sbjct: 200 IFTIRVSKTPTGRIKIGFFCLEKESALTIGGDNDSWVPGDSMAEALARYTFAIPGSTRRTPIRASGTKAFFLERNDGRTCRYVKLTAPPASSPGGAAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPNEETAAAAVKAATVVKLSSLSQSWAGGRGGRRGSVSGSSTSRVTDGSESVCTSTPATDADGSEADSCDEAGGXXXXXXXXXXXXXXXXXXSSDGHGDIESVLDDGCLASIARRKGNSLHHADTATAGSGAGAGDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRQQISCWRKGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQWSAAAPAC 603
BLAST of mRNA_Ecto-sp13_S_contig9794.21445.1 vs. uniprot
Match: A0A061QLQ6_9CHLO (Uncharacterized protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QLQ6_9CHLO) HSP 1 Score: 87.4 bits (215), Expect = 1.300e-15 Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 3 Query: 1320 QLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRLQISCWRKGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDF 1664
+L G K+TGD NVPA K SFV L T+ D E + +D RP++ F TG + NL +R +++ G+GQINR P W+PEWVDV + Y +G R FS+++ + R ++DF
Sbjct: 85 RLVGLKLTGDPNVPATKLSFVAAL-TEPDDPEGVLADLRPIIAFPSTGPAVVNLQDR--EVAGLFLGKGQINRDPDVWAPEWVDVRLITY-SGQRKGFSILWHDMGEFWRHIIDF 195 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9794.21445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9794.21445.1 >prot_Ecto-sp13_S_contig9794.21445.1 ID=prot_Ecto-sp13_S_contig9794.21445.1|Name=mRNA_Ecto-sp13_S_contig9794.21445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=432bp MFTVRVSKTPTDRIKIGFFCLEKESSLTIGGDDDSWVPGDSMAEALARYTback to top mRNA from alignment at Ecto-sp13_S_contig9794:894..3698+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9794.21445.1 ID=mRNA_Ecto-sp13_S_contig9794.21445.1|Name=mRNA_Ecto-sp13_S_contig9794.21445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2805bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9794:894..3698+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9794:894..3698+ >mRNA_Ecto-sp13_S_contig9794.21445.1 ID=mRNA_Ecto-sp13_S_contig9794.21445.1|Name=mRNA_Ecto-sp13_S_contig9794.21445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1296bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9794:894..3698+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |