mRNA_Ecto-sp13_S_contig9792.21443.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9792.21443.1 vs. uniprot
Match: D8LQ11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ11_ECTSI) HSP 1 Score: 529 bits (1362), Expect = 5.850e-187 Identity = 259/262 (98.85%), Postives = 261/262 (99.62%), Query Frame = 1
Query: 1 LEARGVWDTLRARLAQTEDVEGFMAELTDVLEKVLRSCPKQDPPPAEFYSRLVSEIDAVGWSHLVSMDSLLMSVQLRERDAAGREHVFAVSLPSNYPHSPPICSVDLPTHLNLRWSPGQSSLATVLEQFREALTPFHELWNVLDDLDKHTWVLEPEKPSRSTTHRRVAVARHCSVMLKIDPRAPGDVPEVRFLGSQAVIGPLREAYERNLFRWNHSLLVRANLEAALELKLPSPATTAKADFSADCGICYAYRLQRDDAAGD 786
LEARGVWDTLRARLAQTEDVEGFMAELTDVLEKVLRSCPKQDPPPAEFYSRLVSEIDAVGWSHLVSMDSLL SVQLRERDAAGREHVFA+SLPSNYPHSPPICSVDLPTHLNLRWSPGQSSLATVLEQFREALTPFHELWNVLDDLDKHTWVLEPEKPSRSTTHRRVAVARHCSVMLKIDPRAPGDVPEVRFLGSQAVIGPLREAYERNLFRWNHSLLVRANLEAALELKLPSPATTAKAD+SADCGICYAYRLQRDDAAGD
Sbjct: 55 LEARGVWDTLRARLAQTEDVEGFMAELTDVLEKVLRSCPKQDPPPAEFYSRLVSEIDAVGWSHLVSMDSLLTSVQLRERDAAGREHVFAISLPSNYPHSPPICSVDLPTHLNLRWSPGQSSLATVLEQFREALTPFHELWNVLDDLDKHTWVLEPEKPSRSTTHRRVAVARHCSVMLKIDPRAPGDVPEVRFLGSQAVIGPLREAYERNLFRWNHSLLVRANLEAALELKLPSPATTAKADYSADCGICYAYRLQRDDAAGD 316
BLAST of mRNA_Ecto-sp13_S_contig9792.21443.1 vs. uniprot
Match: A0A835YLD4_9STRA (WD-repeat region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD4_9STRA) HSP 1 Score: 275 bits (702), Expect = 1.620e-87 Identity = 150/282 (53.19%), Postives = 180/282 (63.83%), Query Frame = 1
Query: 1 LEARGVWDTLRARLAQTEDVEGFMAELTDVLEKVLRSCPKQDPPPAEFYSRLVSEIDAVGWSHLVSMDSLLMSVQLRERDAAGREHVFAVSLPSNYPHSPPICSVDLPTHLNLRWSPGQSSLATVLEQFREALTPFHELWNVLDDLDKHTWVLEPEKPSRSTTHRRVAVARHCSVMLKIDPRAPGDVPEVRFLGSQAVIGPLREA-----------------YERNLFR-WNHSLLVRANLEAALELKLPSPATTAKADFSADCGICYAYRLQRDDAAGDGG 792
L + G LR RLAQT D F+AEL DVL+++LR+ P+ P PA +YSRLV+EID VGW HLV++ L +QLR DAAGR HV V++P +YP + P C DLP L+W GQSSLA VL QFR AL PF LW VLDDLD HT VLEPE SR+ RRVA+A HCS+ L ++P AP PEVRFLG+QA + P + A + N R W+ S L+RANLEAAL LPSPATT + D S DCGICY YRL DA+G GG
Sbjct: 66 LTSAGALPALRLRLAQTPDPASFVAELQDVLQRLLRAAPQSAPAPAAYYSRLVAEIDKVGWEHLVTISERLSHLQLRVSDAAGRHHVIGVTMPPDYPRTAPTCVADLPAPFALQWRAGQSSLADVLGQFRAALAPFLPLWEVLDDLDAHTHVLEPEHRSRAIAQRRVALAPHCSLSLALNPLAPRAAPEVRFLGAQASLAPFKAAVRCAXXXXXXXXXXXXAFAANAPRTWDPSRLLRANLEAALGAPLPSPATTLREDISGDCGICYQYRLA--DASGGGG 345
BLAST of mRNA_Ecto-sp13_S_contig9792.21443.1 vs. uniprot
Match: A0A2R6WJG8_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WJG8_MARPO) HSP 1 Score: 227 bits (579), Expect = 2.280e-69 Identity = 113/261 (43.30%), Postives = 160/261 (61.30%), Query Frame = 1
Query: 10 RGVWDTLRARLAQTEDVEGFMAELTDVLEKVLRSCPKQDPPPAEFYSRLVSEIDAVGWSHLVSMDSLLMSVQLRERDAAGREHVFAVSLPSNYPHSPPICSVDLPTHLNLRWSPGQSSLATVLEQFREALTPFHELWNVLDDLDKHTWVLEPEKPSRSTTHRRVAVARHCSVMLKIDPRAPGDVPEVRFLGSQAVIGPLREAYERNLFRWNHSLLVRANLEAALELKLPSPATTAKADFSADCGICYAYRLQRDDAAGDGG 792
RGV ++ RL Q+ D+ F+ EL D+LE+++R+ P P FYS+L + +D+VGW HL+ + L S+ LR D+AGREH+ V LP +P P S +LP ++LR G+S L ++ Q+ A+ + + W+V++D+DK WV+EP+ PSR+ RR+A+ HCS+ + +DP +P VPE RF GS AVI PLR L +W+ S + AN E LE+ PS T K D SADCGICYAYR Q D D G
Sbjct: 56 RGVEPVVQERLKQSYDLSTFVLELKDILERIVRTQPFVSLPTPAFYSQLCANLDSVGWEHLIWLSDELSSLHLRIFDSAGREHIVLVDLPPGFPEVAPTASANLPIPVDLRSLQGES-LKDIILQYESAIETYQDFWDVMEDVDKRVWVMEPDHPSRADAFRRIALGGHCSLSIVVDPLSPRSVPECRFFGSDAVISPLRRRLNSGLRKWDRSRPLIANFEEVLEITFPSAQETDKEDMSADCGICYAYRAQDDALCSDVG 315
BLAST of mRNA_Ecto-sp13_S_contig9792.21443.1 vs. uniprot
Match: H3AM62_LATCH (Uncharacterized protein n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3AM62_LATCH) HSP 1 Score: 224 bits (572), Expect = 2.040e-68 Identity = 111/252 (44.05%), Postives = 158/252 (62.70%), Query Frame = 1
Query: 10 RGVWDTLRARLAQTEDVEGFMAELTDVLEKVLRSCPK-QDPPPAEFYSRLVSEIDAVGWSHLVSMDSLLMSVQLRERDAAGREHVFAVSLPSNYPHSPPICSVDLPTHLNLRWSPGQSSLATVLEQFREALTPFHELWNVLDDLDKHTWVLEPEKPSRSTTHRRVAVARHCSVMLKIDPRAPGDVPEVRFLGSQAVIGPLREAYERNLFRWNHSLLVRANLEAALELKLPSPATTAKADFSADCGICYAYRL 762
RG ++ RL D+ FM EL VLE L+S + PPP ++Y +L+ EI+++GW L D+ L +++L+ D+AGREH+ V L +NYP PP CSVD P + W+P QSSL + QF AL E W+ +D++D+ TWVLEPEKP+RS+T RR+A+ + SV +++DPR P +PE FLG+ ++ PLR+ N+ WN V NL+ LE+ PSP K++FS +CGICYAYRL
Sbjct: 57 RGYHQIIKQRLQHCSDLVSFMLELKTVLEIALKSRHELYAPPPPQYYLQLIKEIESLGWDKLAYTDTELSTIRLKVVDSAGREHLITVKLKANYPAEPPACSVDFPVPFLISWTP-QSSLINIHSQFLAALEVLKEFWDTMDEIDEKTWVLEPEKPTRSSTMRRIAIGTNVSVNIEVDPRHPNMLPECCFLGADHMVTPLRDKLNSNMHLWNPDCSVFQNLKDVLEIDFPSPTNHEKSNFSIECGICYAYRL 307
BLAST of mRNA_Ecto-sp13_S_contig9792.21443.1 vs. uniprot
Match: A0A665TRS0_ECHNA (FA complementation group L n=3 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665TRS0_ECHNA) HSP 1 Score: 224 bits (571), Expect = 3.230e-68 Identity = 108/253 (42.69%), Postives = 165/253 (65.22%), Query Frame = 1
Query: 10 RGVWDTLRARLAQTEDVEGFMAELTDVLEKVLRSCPK-QDPPPAEFYSRLVSEIDAVGWSHLVSMDSLLMSVQLRERDAAGREHVFAVSLPSNYPHSPPICSVDLPTHLNLRWSPGQSSLATVLEQFREALTPFHELWNVLDDLDKHTWVLEPEKPSRSTTHRRVAVARHCSVMLKIDPRAPGDVPEVRFLGSQAVIGPLREAYERNLFRWNHSLLVRANLEAALELKLPSPATTAKADFSADCGICYAYRLQ 765
RG ++ RL Q+ D+ FM EL V+E L+S P+ PP ++YS+L+SE++ +GW L+S+D+ +++L+ +D+AGR+H+ + L S +P P CS DLP L + W+P QS+LA + QF L E W+VLD++D+ TW+LEPEKPSRS T RR+A+ + S+ +++DP+ P +PE LG++ V+ PLR N+ WN + NL+ LE++ PSPAT K+ FS +CGICY+YRL+
Sbjct: 61 RGYEHIVKQRLQQSADLVSFMLELKTVMEVGLKSRPECSSIPPPQYYSQLISEMETLGWDKLLSIDTEFQTLRLKVQDSAGRQHILIIKLKSKHPAEAPECSADLPLPLLITWTP-QSTLAQIHHQFLLVLESLTEFWDVLDEIDRQTWILEPEKPSRSDTMRRIAIGNNVSIKVEVDPKHPKMLPECCLLGAELVVTPLRNKLNANMHLWNPDSSLLLNLQDVLEIEFPSPATHEKSAFSVECGICYSYRLE 312
BLAST of mRNA_Ecto-sp13_S_contig9792.21443.1 vs. uniprot
Match: A0A6J2V969_CHACN (E3 ubiquitin-protein ligase FANCL n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2V969_CHACN) HSP 1 Score: 221 bits (563), Expect = 4.860e-67 Identity = 112/252 (44.44%), Postives = 160/252 (63.49%), Query Frame = 1
Query: 10 RGVWDTLRARLAQTEDVEGFMAELTDVLEKVLRSCPK-QDPPPAEFYSRLVSEIDAVGWSHLVSMDSLLMSVQLRERDAAGREHVFAVSLPSNYPHSPPICSVDLPTHLNLRWSPGQSSLATVLEQFREALTPFHELWNVLDDLDKHTWVLEPEKPSRSTTHRRVAVARHCSVMLKIDPRAPGDVPEVRFLGSQAVIGPLREAYERNLFRWNHSLLVRANLEAALELKLPSPATTAKADFSADCGICYAYRL 762
RG ++ RL Q+ D+ F+ EL V E L+ P+ Q PP ++YSRL++E++A+GW L+ +D+ +++L+ D++GR+H V L YP P CS DLP L + W+P QS+LA + QF +L E W+VLD++D+ TWVLEPEKP+R+ T RR+A+ + S+ ++IDPR P +PE LG++ V+ PLR N+ WN L V NL LE LPSPAT K+ FS +CGICYAYRL
Sbjct: 62 RGYQQIVKQRLHQSPDLVSFILELKAVTEVALKHRPECQTIPPPQYYSRLITEMEALGWDKLLFIDTEFRTLKLKGEDSSGRQHAITVHLKPEYPAEAPECSADLPVPLTITWTP-QSTLAHIHSQFLLSLEALSEFWSVLDEIDQQTWVLEPEKPTRADTMRRIAIGNNVSIKVEIDPRHPRMLPECCLLGAEHVVTPLRNRLNVNMHLWNVHLSVLQNLRDLLETDLPSPATHEKSSFSMECGICYAYRL 312
BLAST of mRNA_Ecto-sp13_S_contig9792.21443.1 vs. uniprot
Match: UPI000443C52D (E3 ubiquitin-protein ligase FANCL isoform X2 n=3 Tax=Poecilia TaxID=8080 RepID=UPI000443C52D) HSP 1 Score: 221 bits (564), Expect = 8.710e-67 Identity = 109/247 (44.13%), Postives = 155/247 (62.75%), Query Frame = 1
Query: 28 LRARLAQTEDVEGFMAELTDVLEKVLRSCPK-QDPPPAEFYSRLVSEIDAVGWSHLVSMDSLLMSVQLRERDAAGREHVFAVSLPSNYPHSPPICSVDLPTHLNLRWSPGQSSLATVLEQFREALTPFHELWNVLDDLDKHTWVLEPEKPSRSTTHRRVAVARHCSVMLKIDPRAPGDVPEVRFLGSQAVIGPLREAYERNLFRWNHSLLVRANLEAALELKLPSPATTAKADFSADCGICYAYRLQ 765
++ RL Q+ D+ GF+ EL VLE L CP+ + PP +YS L+SE++ VGW ++S+D +++LR D++GR+H V L S +P P CS DLP L + W+P QSSL + QF L + W+VLD++D TWVLEPEKPSRS T RR+A+ + S+ +++DPR P +PE LG+ V+ PLR N+ WN V NL LE++ PSPAT K+ F+ +CGICY+YRL+
Sbjct: 60 VKQRLQQSVDLGGFILELKTVLEVALNRCPEGRSVPPPRYYSLLISEMETVGWDKMLSIDMDFQTLKLRAEDSSGRQHTLTVKLKSKHPAEAPDCSADLPVPLTITWTP-QSSLEQLHSQFLLVLESLTDFWDVLDEIDGKTWVLEPEKPSRSDTMRRIAIGNNVSIKVEVDPRHPKMLPECCLLGADHVVTPLRNKLNANMHMWNPDSSVLNNLRDVLEIEFPSPATHEKSSFNVECGICYSYRLE 305
BLAST of mRNA_Ecto-sp13_S_contig9792.21443.1 vs. uniprot
Match: A0A8D0C8Y2_9SAUR (FA complementation group L n=2 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0C8Y2_9SAUR) HSP 1 Score: 219 bits (559), Expect = 2.220e-66 Identity = 104/251 (41.43%), Postives = 155/251 (61.75%), Query Frame = 1
Query: 13 GVWDTLRARLAQTEDVEGFMAELTDVLEKVLRSCPKQ-DPPPAEFYSRLVSEIDAVGWSHLVSMDSLLMSVQLRERDAAGREHVFAVSLPSNYPHSPPICSVDLPTHLNLRWSPGQSSLATVLEQFREALTPFHELWNVLDDLDKHTWVLEPEKPSRSTTHRRVAVARHCSVMLKIDPRAPGDVPEVRFLGSQAVIGPLREAYERNLFRWNHSLLVRANLEAALELKLPSPATTAKADFSADCGICYAYRL 762
G L+ RL + D+ FM E +LE +++ + PPP ++YS L+ EI+A+GW +V +D +++L+ D++GR+H+ + L + YP PP+C VDLP ++ W P QSSL ++ QF L E W LD++D+ TWVLEPEKP+RS T RR+A+ ++ SV +++DPR P PE FLG+ V+ PL+ N+ W+ + + NL+ LEL P+ T K+DFS DCGICYAYRL
Sbjct: 65 GYQQILKQRLQHSSDLVSFMVEFKTILEVAVKNTQEMCAPPPPQYYSGLIGEIEALGWDKVVFVDPSFNAIKLKAEDSSGRDHLITLKLNAKYPAEPPVCIVDLPIPFSVSWIP-QSSLLSIHSQFLAVLESLKEFWKALDEIDEKTWVLEPEKPARSATMRRIAIGKNVSVNIEVDPRHPTMFPECYFLGADHVVNPLKSKLNNNIHMWDPEISLLQNLKEVLELDFPTRETLEKSDFSMDCGICYAYRL 314
BLAST of mRNA_Ecto-sp13_S_contig9792.21443.1 vs. uniprot
Match: A0A8D3B0G7_SCOMX (FA complementation group L n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3B0G7_SCOMX) HSP 1 Score: 219 bits (558), Expect = 2.890e-66 Identity = 107/253 (42.29%), Postives = 164/253 (64.82%), Query Frame = 1
Query: 10 RGVWDTLRARLAQTEDVEGFMAELTDVLEKVLRSCPK-QDPPPAEFYSRLVSEIDAVGWSHLVSMDSLLMSVQLRERDAAGREHVFAVSLPSNYPHSPPICSVDLPTHLNLRWSPGQSSLATVLEQFREALTPFHELWNVLDDLDKHTWVLEPEKPSRSTTHRRVAVARHCSVMLKIDPRAPGDVPEVRFLGSQAVIGPLREAYERNLFRWNHSLLVRANLEAALELKLPSPATTAKADFSADCGICYAYRLQ 765
RG ++ RL Q+ D+ F+ EL VLE L+S P+ PP ++YS+L++E++ +GW+ L+ +D+ L +++L+ D++GR+H+ + L S +P P CS DLP L W+P QS+L + +QF L E W+VL+++D +TW+LEPEKPSRS T RR+A+ + S+ +++DPR P +PE LG++ V+ PLR N+ WN V NL LE++ PSPAT K+DFS +CGICY+YRL+
Sbjct: 61 RGYEHIVKQRLQQSADLVTFLLELKTVLEVGLKSRPECSSIPPPQYYSQLIAEMETLGWNKLLFIDTELRTLRLKAEDSSGRQHILTIKLKSKHPAEAPECSADLPLPLATTWTP-QSTLQQLHDQFLVVLESLTEFWDVLEEVDGNTWILEPEKPSRSDTMRRIAIGNNVSIKVEVDPRHPKMLPECCLLGAEHVVTPLRNKLNANMHLWNPDSSVLRNLRDVLEIEFPSPATHEKSDFSTECGICYSYRLE 312
BLAST of mRNA_Ecto-sp13_S_contig9792.21443.1 vs. uniprot
Match: A0A3B5QDR7_XIPMA (RING-type domain-containing protein n=23 Tax=Cyprinodontoidei TaxID=8087 RepID=A0A3B5QDR7_XIPMA) HSP 1 Score: 220 bits (561), Expect = 2.950e-66 Identity = 106/247 (42.91%), Postives = 156/247 (63.16%), Query Frame = 1
Query: 28 LRARLAQTEDVEGFMAELTDVLEKVLRSCPK-QDPPPAEFYSRLVSEIDAVGWSHLVSMDSLLMSVQLRERDAAGREHVFAVSLPSNYPHSPPICSVDLPTHLNLRWSPGQSSLATVLEQFREALTPFHELWNVLDDLDKHTWVLEPEKPSRSTTHRRVAVARHCSVMLKIDPRAPGDVPEVRFLGSQAVIGPLREAYERNLFRWNHSLLVRANLEAALELKLPSPATTAKADFSADCGICYAYRLQ 765
++ RL Q+ D+ GF+ EL VLE L CP+ + PP +YS+L+SE++ VGW ++ +D +++LR D++GR+H V L S +P P CS DLP L + W+P QS+L + QF L + W+VLD++D+ TWVLEPEKPSRS T RR+A+ + S+ +++DPR P +PE LG+ V+ PLR N+ WN + NL LE++ PSPAT K+ F+ +CGICY+YRL+
Sbjct: 67 VKQRLQQSVDLGGFILELKTVLEVALNRCPEGRSVPPPRYYSQLISEMETVGWDKMLFIDMDFQTLKLRAEDSSGRQHTLTVKLKSKHPAEAPDCSADLPVPLTITWTP-QSTLEQLHSQFLLVLESLTDFWDVLDEIDRKTWVLEPEKPSRSDTMRRIAIGNNVSIKVEVDPRHPKMLPECCLLGADHVVTPLRNKLNANMHMWNPDSSILNNLRDVLEIEFPSPATHEKSSFNVECGICYSYRLE 312 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9792.21443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9792.21443.1 >prot_Ecto-sp13_S_contig9792.21443.1 ID=prot_Ecto-sp13_S_contig9792.21443.1|Name=mRNA_Ecto-sp13_S_contig9792.21443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=264bp LEARGVWDTLRARLAQTEDVEGFMAELTDVLEKVLRSCPKQDPPPAEFYSback to top mRNA from alignment at Ecto-sp13_S_contig9792:951..6161- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9792.21443.1 ID=mRNA_Ecto-sp13_S_contig9792.21443.1|Name=mRNA_Ecto-sp13_S_contig9792.21443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5211bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9792:951..6161- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9792:951..6161- >mRNA_Ecto-sp13_S_contig9792.21443.1 ID=mRNA_Ecto-sp13_S_contig9792.21443.1|Name=mRNA_Ecto-sp13_S_contig9792.21443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9792:951..6161- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |