mRNA_Ecto-sp13_S_contig9787.21438.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: D8LL80_ECTSI (Calcium ion binding n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL80_ECTSI) HSP 1 Score: 566 bits (1458), Expect = 2.390e-201 Identity = 309/329 (93.92%), Postives = 311/329 (94.53%), Query Frame = 1 Query: 37 MGRLNSPSAVAIASDEITEMQSKLMVALLSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKPANAEAEAAARAAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDTADELAMEAEAAAAAELKREGGQARRKSSVSVARKTSVMAKEITRRISSALLPQIDSAADPGGSNSDDXXXXXXXXXXXAAGGSA 1023 MGRLNSPSAVAIASDEITEMQSKLMVAL SKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVF ERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLME PA AEAEAAARAAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDTADELAMEAEAAAAAE KREGGQ+RRKSSVSVARKTSVMAKEITRRISSALLPQIDSAADPGGSN+DD A G SA Sbjct: 1 MGRLNSPSAVAIASDEITEMQSKLMVALQSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFQERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMENPATAEAEAAARAAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDTADELAMEAEAAAAAESKREGGQSRRKSSVSVARKTSVMAKEITRRISSALLPQIDSAADPGGSNNDDANDPAASSPKNATGASA 329
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: A0A7S3XZL5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZL5_HETAK) HSP 1 Score: 162 bits (409), Expect = 2.350e-42 Identity = 110/284 (38.73%), Postives = 147/284 (51.76%), Query Frame = 1 Query: 37 MGRLNSPSAVAIASDEITEMQSKLMVAL---LSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLM---EKPANAEAEAAAR---------------------AAG----------RRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDTAD 777 MG L S A M SK+ AL L + EE + + + ++FTR+LLK +R + ++RVF E D D+ G I E+ A+ L+V L+ +EI+ LF ++D L +K+FLV L +GYVL+ IPDL+ E+ AN E + +AG RR SNFY EQ + + L YLLFD + +G I R V V E G K+ + S+ERW EMDWD NG ISF EFVYAFT+WVDVD ED AD Sbjct: 1 MGALASIMKPKHAGSSNKAMNSKIKTALKAKLKETEELKKQGRDPINFTRILLKFQIIRKVIKRVQRVFTEYDKDKDGHITFEELQDALVKLQVKLTREEIRDLFNLSDLMGYHTLNLKEFLVALTVGYVLEVIPDLLAEAEERANNMNEMSVMIRNAPEEYELEEERSMTMVPSSAGNTVRRRPKRRRRSSNFYGLEQELCYVMHLIVGCYLLFDTKGRGYIRRRDVGAAVRERGGKEGSASGFFSEERWGEMDWDHNGSISFEEFVYAFTRWVDVDDEDEAD 284
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: D8SHN1_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SHN1_SELML) HSP 1 Score: 110 bits (276), Expect = 5.200e-25 Identity = 69/240 (28.75%), Postives = 132/240 (55.00%), Query Frame = 1 Query: 79 DEITEMQSKLMVALLSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKPANAEAEAAARAAGRRMSNFYNK------EQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDTADE 780 +++++++ +++ A+ + + + FK SF +L+K + +R VF + D D SG ID+ E+ T ++L+V ++ E+KA + +D + K + K+F++VLA+ Y+L + KP + E + G ++ N ++ E T ++ F + FDK+ G +SR++++ + E S + +R++EMDWD NG I+F EF++AFT WV ++ E+ ADE Sbjct: 12 NDVSKIERRMVEAMRKRAKAGPSPFK---SFNSILMKFPKIDKSFEQVRGVFKKFDKDDSGTIDLEELKTCFRELQVEFTDTEVKAFHEESDMDKSKGVDFKEFIIVLALVYLLG---ETGAKPVKQKEEDKGK--GSQLKNLKSRIGLAELESTFETIVDTFRF----FDKDGDGYVSRKEMITAINEASPGQSSSGESIGVKRFEEMDWDKNGMITFKEFLFAFTDWVGIEEEEDADE 239
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: A0A813C2D6_9DINO (Calmodulin n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C2D6_9DINO) HSP 1 Score: 110 bits (274), Expect = 3.900e-24 Identity = 80/280 (28.57%), Postives = 138/280 (49.29%), Query Frame = 1 Query: 88 TEMQSKLMVALLSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKP-ANAEAEAAARAAGRRMSNF----------------YNKEQTVRNA------------------------LELFTYAYLLFDKECKGVISREQVM----IVVAENGQKDEG-------SMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDT 771 T + K+ + +K+ E + SF R+LLK +R M I+RVF E D D+SG I+ E++ AM + + +++ +F ADFY+++QLT ++F+V LA+GY+L IP L P A ++A AA + A + + + QT+ + L A+ FD + G+I +E++ + A++G K ++S L++ER++E+DWD +G ++F EF++AF WV +D ED+ Sbjct: 25 TSLDLKIAELIKAKEAEAEASSTKVHSFNRILLKFPFIRKTMRSIKRVFDEFDADKSGTIEYDELANAMAKFGTSAASVDVEEVFANADFYDNEQLTFREFVVSLALGYLLGQIPILDAMPVARSDAGAAVKEANAKQAAMDAGEDVEVDTEQPAARSRRSQTISRSKVQKMSSMSEGQLLGSEGAAIAYSFTLVLEAFFYFDPKHTGMIKKEELASSMAALSAQSGAKGVSPHGHSGEALSFLTEERYNELDWDHDGSVTFKEFLFAFMAWVGLDDEDS 304
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: A0A482T3U5_9ARCH (EF-hand domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3U5_9ARCH) HSP 1 Score: 107 bits (268), Expect = 5.200e-24 Identity = 75/200 (37.50%), Postives = 110/200 (55.00%), Query Frame = 1 Query: 97 QSKLMVALLSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKPANAEAEAAARAAG---RRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEM 687 ++K+ ALL KK E+ KQ +SF ++LLK +R + ++ +FHE D G++D + M+ L VN++ ++I LF D E +TMK+FLV L +G VLDAIP L P +A A A A R S ++ L L AYL+FD E KG I R V ++ E+G K G ++LSQ+RW++M Sbjct: 26 ETKINQALLKKKMEHIISDKQ-ISFEKILLKFDKLRVVLGYVKTIFHEVAED--GKLDHNGLQVTMQRLCVNMTLEDILDLFDFIDVQETNVITMKEFLVALTIGMVLDAIPALAT-PHDASGTAGAPAKPSLKRSFSGLLGHNSEIKEMLNLIVSAYLIFDPEGKGYIERSSVEKLLDEHGAKQGGGNAMLSQQRWNDM 221
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: K3WUQ5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUQ5_GLOUD) HSP 1 Score: 105 bits (261), Expect = 1.060e-22 Identity = 81/258 (31.40%), Postives = 132/258 (51.16%), Query Frame = 1 Query: 85 ITEMQSKLMVAL--LSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDL-MEKPANAEAEAAAR---AAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQ------------------KDEGSMSI---LSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDTAD 777 +T + K+ AL L KK +K FTR+LLK V N +R F E D + G I ++ +A + L V+ S++EI +F+ +D ED +L K+FLV LA+G+VL IP L E+ + A A + A + + + +R A +L A+L FD + G+I+++++ + + + Q K+ G MSI + + R++EMDW+++G I F EF+ AF WV +D +D D Sbjct: 1 MTPLDLKITNALKELQKKRVQDSKDHHHNPFTRILLKFPIVAKAFNSVRSAFEEFDKGKKGYIVYADLESAFEKLGVSFSKEEIGQVFEESDMLEDGRLNFKEFLVCLAIGFVLHKIPSLERERLSIFYAPLATKDKEAGPPNQALLFGEGNKLRIAFQLAVDAFLWFDVDGNGLINKDEMAMRLGTSTQLHSPTKKTSTLKERAGFHKESGEMSINAEIWERRFNEMDWNNDGTIQFKEFLMAFESWVGLDDDDLVD 258
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: A0A5P1EQW8_ASPOF (Uncharacterized protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EQW8_ASPOF) HSP 1 Score: 103 bits (258), Expect = 1.440e-22 Identity = 74/253 (29.25%), Postives = 129/253 (50.99%), Query Frame = 1 Query: 25 FGGCMGRLNSPSAVAIASDEITEMQSKLMVALLSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKPANAEAEAAARAAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVD-GEDTADE 780 GG +GR +S S +++++ K MV + K+ T K SF +++K + + + +F E D D +G ID EM + L+++ SE+EI LF++ D ED + +F+V+L + Y L+++PA++ G+ F + + T E A++ DK G +S+ +++ + E E S ++ R++EMDWD NG ++F EF++AFT+WV +D ED DE Sbjct: 1 MGGILGRSDSNKQ----SSPVSKLELK-MVEAMKKRSLKGTSMK---SFNSIIMKFPKIDESLRKCKTIFEEFDEDSNGTIDRVEMKHCFQKLEIDFSEEEINDLFEVCDINEDMGMKFNEFIVLLCLVY-------LLKEPADSTVVQ-----GKYQLGFPDLQAT----FETLVNAFVFLDKNSDGYVSKSEMVQAINETT-SGERSSGPIAMRRFEEMDWDKNGMVTFKEFLFAFTRWVGIDENEDDEDE 228
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: A0A0B0MQV4_GOSAR (Putative calcium-binding CML21-like protein n=12 Tax=Gossypium TaxID=3633 RepID=A0A0B0MQV4_GOSAR) HSP 1 Score: 103 bits (256), Expect = 2.020e-22 Identity = 69/232 (29.74%), Postives = 122/232 (52.59%), Query Frame = 1 Query: 88 TEMQSKLMVALLSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKPANAEAEAAARAAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVD-GEDTADE 780 T++++K++ A+ + E T K SF ++LK + + + + VF + D D +G ID E+ L+++ +E+EI LFK DF ++ + +F+V+L + Y+L + A G+ N E T E F A++ DK G +S+ +++ + E+G++ G +++ +R++EMDWD NG +SF EF++AFT WV +D ED DE Sbjct: 4 TKLEAKMVEAMQRRASEG-TAMK---SFNSIILKFPKIDESLRNCKAVFEQFDEDSNGAIDNEELKKCFNKLQISFTEEEISDLFKACDFNQNMGIKFNEFIVLLCLVYLLK--------------DNAPGHEGKSRMGMPNLEAT----FETFVDAFVFLDKNKDGFVSKNEMVQAINESGERSSGRIAM---KRFEEMDWDKNGSVSFKEFLFAFTNWVGIDDAEDDEDE 210
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: A0A3B6QD76_WHEAT (Uncharacterized protein n=12 Tax=Triticeae TaxID=147389 RepID=A0A3B6QD76_WHEAT) HSP 1 Score: 103 bits (256), Expect = 2.610e-22 Identity = 71/254 (27.95%), Postives = 131/254 (51.57%), Query Frame = 1 Query: 25 FGGCMGRLNSPSAVAIASDEITEMQSKLMVALLSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKPANAEAEAAARAAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAEN--GQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVDGEDTADE 780 GG +G+ ++P + A T+++ K MV + ++ + T + SF V++K + + + R +F + D D +G ID E+ + L ++ +++EIK LF+ D YE + +F+V L + Y+L+ PA +EA R+ N E T ++ F + DK G +S+ +V+ + E G++ G + + +R++EMDWD NG ++F EF++AFT+WV +D + D+ Sbjct: 1 MGGVIGKGDTPRYSSAA----TKLEQK-MVDAMQQRAQQGTSLR---SFNSVIMKFPKIDESLRNCRIIFQQFDEDSNGEIDQLELKHCFQKLDISFTDEEIKDLFEACDIYEHMGMKFNEFIVFLCLVYLLN-------DPAVSEA--------RKRMGLGNLEPTFETLVDAFVF----LDKNKDGYVSKNEVIEAINETSAGERSSGRIGV---KRFEEMDWDKNGTVTFKEFLFAFTRWVGIDDNEDDDD 224
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Match: A0A1U8J3L0_GOSHI (probable calcium-binding protein CML21 n=15 Tax=Gossypium TaxID=3633 RepID=A0A1U8J3L0_GOSHI) HSP 1 Score: 102 bits (253), Expect = 6.110e-22 Identity = 70/245 (28.57%), Postives = 126/245 (51.43%), Query Frame = 1 Query: 25 FGGCMGRLNSPSAVAIASDEITEMQSKLMVALLSKKEEYRTKFKQEMSFTRVLLKLGTVRTFMNDIRRVFHERDTDQSGRIDMCEMSTAMKDLKVNLSEDEIKALFKMADFYEDKQLTMKQFLVVLAMGYVLDAIPDLMEKPANAEAEAAARAAGRRMSNFYNKEQTVRNALELFTYAYLLFDKECKGVISREQVMIVVAENGQKDEGSMSILSQERWDEMDWDSNGDISFGEFVYAFTKWVDVD 759 GG +G+ SP T++++K++ A+ ++ +K SF ++LK + + + +F + D D +G ID E+ + L+V +E+EI+ LFK D ED + +F+V+L + Y+L K E EA +R N E T ++ A++L DK G +S+ +++ + E+G++ G ++ +R++EMDWD NG +SF EF++AFT WV ++ Sbjct: 1 MGGVVGKSESPE---------TKLEAKMVEAM----QQRASKGTTIKSFNSIILKFPKIDHTLRKCKAIFEQFDEDSNGAIDHEELKKCLHKLQVCFTEEEIEDLFKACDMNEDMGIKFNEFIVLLCLVYLL--------KDNATEFEAKSR------MGVPNLEATFETLVD----AFVLLDKNKDGYVSKTEMVQAINESGERSSGP---IATKRFEEMDWDKNGSVSFKEFLFAFTTWVGIE 211 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9787.21438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9787.21438.1 >prot_Ecto-sp13_S_contig9787.21438.1 ID=prot_Ecto-sp13_S_contig9787.21438.1|Name=mRNA_Ecto-sp13_S_contig9787.21438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=341bp MTLGSALPFGGCMGRLNSPSAVAIASDEITEMQSKLMVALLSKKEEYRTKback to top mRNA from alignment at Ecto-sp13_S_contig9787:2015..6159+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9787.21438.1 ID=mRNA_Ecto-sp13_S_contig9787.21438.1|Name=mRNA_Ecto-sp13_S_contig9787.21438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4145bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9787:2015..6159+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9787:2015..6159+ >mRNA_Ecto-sp13_S_contig9787.21438.1 ID=mRNA_Ecto-sp13_S_contig9787.21438.1|Name=mRNA_Ecto-sp13_S_contig9787.21438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9787:2015..6159+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |