mRNA_Ecto-sp13_S_contig97867.21437.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: D7FV96_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV96_ECTSI) HSP 1 Score: 124 bits (311), Expect = 3.870e-31 Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 1 Query: 67 HLSALAGNVGAAQALLAAGATMMTDDAGNSPLHVAAAQGHSDIIQLFVLGSKDEPARKVQASSDAEGR 270 HLSALAGN+GAAQALLAAGATMMTDDAGNSPLHVAAAQGHSDIIQLFVLGS+DE ARKVQASSDAEGR Sbjct: 97 HLSALAGNLGAAQALLAAGATMMTDDAGNSPLHVAAAQGHSDIIQLFVLGSQDESARKVQASSDAEGR 164
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: A0A6H5L134_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L134_9PHAE) HSP 1 Score: 120 bits (300), Expect = 2.530e-30 Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 1 Query: 67 HLSALAGNVGAAQALLAAGATMMTDDAGNSPLHVAAAQGHSDIIQLFVLGSKDEPARKVQASSDAEGR 270 HLSALAGN+GAAQALLAAGATMMTDDAGNSPLHVAAAQGHSDIIQLFVLG +DE ARKVQASS AEGR Sbjct: 97 HLSALAGNLGAAQALLAAGATMMTDDAGNSPLHVAAAQGHSDIIQLFVLGGQDESARKVQASSHAEGR 164
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: A0A7S4A3V7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3V7_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 3.360e-8 Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 1 Query: 10 LLSSGAVEDARDAMGQTALHLSALAGNVGAAQALLAAGATMMTDDAGNSPLHVAAAQGHSDIIQLFVLGSKDEPARKVQASS 255 LL +GA DARDA G+T L ++ AG + + LLA GA+++ DDAGNSPLH+A A D ++ + D R A++ Sbjct: 153 LLDAGATVDARDAAGRTPLAVAVQAGRLSLVRVLLARGASLVADDAGNSPLHLAVAA--PDCLEALLRADGDRSGRPRDANT 232
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: A0A8J2SKQ2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKQ2_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 5.360e-8 Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 1 Query: 10 LLSSGAVEDARDAMGQTALHLSALAGNVGAAQALLAAGATMMTDDAGNSPLHVAAAQGHSDIIQLFVLGSKDEPARKVQASS 255 LL +GA DARDA G+T L ++ AG + + LLA GA+++ DDAGNSPLH+A A D ++ + D R A++ Sbjct: 101 LLDAGATVDARDAAGRTPLAVAVQAGRLSLVRVLLARGASLVADDAGNSPLHLAVAA--PDCLEALLRADGDRSGRPRDANT 180
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: A0A0L0DMF4_THETB (Ankyrin n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DMF4_THETB) HSP 1 Score: 54.3 bits (129), Expect = 1.730e-6 Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1 Query: 37 ARDAMGQTALHLSALAGNVGAAQALLAAGATMMTDD-AGNSPLHVAAAQGHSDIIQLFV 210 ARDA+ +TALH +AL+G+ +ALLAAGA T D ++PLH+AA QGH D+I L + Sbjct: 589 ARDALERTALHAAALSGSTACVKALLAAGAAPDTCDWRHDTPLHLAAGQGHEDVIALLL 647
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: UPI001EEC4F37 (ankyrin-1-like n=1 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EEC4F37) HSP 1 Score: 53.1 bits (126), Expect = 4.290e-6 Identity = 41/91 (45.05%), Postives = 50/91 (54.95%), Query Frame = 1 Query: 4 ELLLSSGAVE-DARDAMGQTALHLSALAGNVGAAQALLAAGAT-MMTDDAGNSPLHVAAAQGHSDIIQLFVLGSKDEPARKVQASSDAEGR 270 +LLL+ V+ D D GQTALHL+A NV AAQ LL A+ + D G SPLHVAA QG ++II L + K V A GR Sbjct: 373 DLLLAHPKVKVDDVDVYGQTALHLTARLSNVKAAQKLLEKEASPSILDKDGGSPLHVAALQGETEIIDLILQAQKHN---HVDEDKTANGR 460
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: UPI001CE21038 (cyclin-dependent kinase 4 inhibitor C isoform X1 n=2 Tax=Siniperca chuatsi TaxID=119488 RepID=UPI001CE21038) HSP 1 Score: 48.5 bits (114), Expect = 8.550e-5 Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 1 Query: 1 IELLLSSGAVEDARD-AMGQTALHLSALAGNVGAAQALLAAGA-TMMTDDAGNSPLHVAAAQGHSDIIQLFV 210 +E LL++GA + RD + T H +A G + + +AL+ GA T + D+ GN PLH+AA +GH +++QL + Sbjct: 54 VEALLAAGANPNVRDPVLSLTVTHDAARQGFIDSVRALVDGGADTNLVDEKGNLPLHLAAMEGHLEVVQLLI 125
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: A0A835W370_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835W370_9CHLO) HSP 1 Score: 49.3 bits (116), Expect = 9.560e-5 Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 1 Query: 1 IELLLSSGAVEDARDAMGQTALHLSALAG-NVGAAQALLAAGATMMTDDA-GNSPLHVAAAQGHSDIIQLFV 210 I LL+ GAV DARD G TAL L++ AG +V ALLAAGA +A G SP+++AA +GH +Q + Sbjct: 461 IRQLLAGGAVVDARDTGGATALFLASEAGKSVDVCAALLAAGADPTISNAQGESPMYIAALRGHLGCVQALL 532
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Match: A0A0N5BA11_STREA (ANK_REP_REGION domain-containing protein n=1 Tax=Strongyloides papillosus TaxID=174720 RepID=A0A0N5BA11_STREA) HSP 1 Score: 49.3 bits (116), Expect = 9.660e-5 Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 Query: 58 TALHLSALAGNVGAAQALLAAGATMMTDD-AGNSPLHVAAAQGHSDIIQLF 207 TALHL+A GNV + LL G T+ +D AG +PLH+AA G +D++QLF Sbjct: 491 TALHLAAFTGNVSICKRLLQQGWTVTAEDKAGATPLHIAAGNGFTDVVQLF 541 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig97867.21437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig97867.21437.1 >prot_Ecto-sp13_S_contig97867.21437.1 ID=prot_Ecto-sp13_S_contig97867.21437.1|Name=mRNA_Ecto-sp13_S_contig97867.21437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp IELLLSSGAVEDARDAMGQTALHLSALAGNVGAAQALLAAGATMMTDDAGback to top mRNA from alignment at Ecto-sp13_S_contig97867:38..307+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig97867.21437.1 ID=mRNA_Ecto-sp13_S_contig97867.21437.1|Name=mRNA_Ecto-sp13_S_contig97867.21437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97867:38..307+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig97867:38..307+ >mRNA_Ecto-sp13_S_contig97867.21437.1 ID=mRNA_Ecto-sp13_S_contig97867.21437.1|Name=mRNA_Ecto-sp13_S_contig97867.21437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97867:38..307+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |