Homology
BLAST of mRNA_Ecto-sp13_S_contig97836.21434.1 vs. uniprot
Match:
D7G603_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G603_ECTSI)
HSP 1 Score: 60.5 bits (145), Expect = 8.230e-10
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 1
Query: 1 GIEEVLNTLAERVIKRHPTVGYMRNTIQSYKDLRRMAPGRG 123
GIE++L+TLAERV+ RHP+VGYMR TI Y DL+R APG+G
Sbjct: 192 GIEDLLDTLAERVLVRHPSVGYMRMTIAVYLDLKRRAPGKG 232
BLAST of mRNA_Ecto-sp13_S_contig97836.21434.1 vs. uniprot
Match:
D7G5U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U4_ECTSI)
HSP 1 Score: 58.5 bits (140), Expect = 6.280e-9
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1
Query: 1 GIEEVLNTLAERVIKRHPTVGYMRNTIQSYKDLRRMAPGRG 123
G E++L+TLAERV+ RHP+VGYMR TI Y DL+R APG+G
Sbjct: 193 GTEDLLDTLAERVLVRHPSVGYMRMTIAVYLDLKRRAPGKG 233
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig97836.21434.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 8.23e-10 / Id = 68.29 Expect = 6.28e-9 / Id = 65.85 Sequence D7G603_ECTSI D7G5U4_ECTSI
Match Name E-value Identity Description
D7G603_ECTSI 8.230e-10 68.29 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] D7G5U4_ECTSI 6.280e-9 65.85 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Model size 123 Hectar predicted targeting category no signal peptide or anchor Exons 1 Cds size 123
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681464242.1797569-CDS-Ecto-sp13_S_contig97836:103..226 1681464242.1797569-CDS-Ecto-sp13_S_contig97836:103..226 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig97836 104..226 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig97836.21434.1
>prot_Ecto-sp13_S_contig97836.21434.1 ID=prot_Ecto-sp13_S_contig97836.21434.1|Name=mRNA_Ecto-sp13_S_contig97836.21434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp
GIEEVLNTLAERVIKRHPTVGYMRNTIQSYKDLRRMAPGRG back to top mRNA from alignment at Ecto-sp13_S_contig97836:104..226-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig97836.21434.1 ID=mRNA_Ecto-sp13_S_contig97836.21434.1|Name=mRNA_Ecto-sp13_S_contig97836.21434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97836:104..226- (Ectocarpus species13 EcNAP12_S_4_19m)GGGATCGAGGAAGTCCTCAACACTCTGGCGGAACGAGTGATAAAGAGACA
TCCCACGGTGGGATACATGCGGAACACTATCCAGTCTTACAAAGACCTTA
GGCGCATGGCACCAGGACGCGGG back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig97836:104..226-
>mRNA_Ecto-sp13_S_contig97836.21434.1 ID=mRNA_Ecto-sp13_S_contig97836.21434.1|Name=mRNA_Ecto-sp13_S_contig97836.21434.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97836:104..226- (Ectocarpus species13 EcNAP12_S_4_19m) back to top