mRNA_Ecto-sp13_S_contig9743.21385.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9743.21385.1
Unique NamemRNA_Ecto-sp13_S_contig9743.21385.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9743.21385.1 vs. uniprot
Match: A0A6H5JD24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD24_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 7.330e-21
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:   10 GYRKRGEQAESDNYRIDRLGKTFLSHLGQRRKERLTIGNRSCENNAPSSRGRVINGLTAKASST*EYA 213
            G+R+  E+A  D  RIDRLGKTFLSHL Q RKERL IG+RSC NNAPSSRGRV+NGLTAKA  T EYA
Sbjct:  457 GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTLEYA 524
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BLAST of mRNA_Ecto-sp13_S_contig9743.21385.1 vs. uniprot
Match: A0A6H5JE77_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE77_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.000e-20
Identity = 50/71 (70.42%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:   10 GYRKRGEQAESDNYRIDRLGKTFLSHLGQRRKERLTIGNRSCENNAPSSRGRVINGLTAKASST*EYAPCP 222
            G+R+  E+A  D  RIDRLGKTFLSHL Q RKERL IG+RSC NNAPSSRGRV+NGLTAKA  T EY   P
Sbjct:  634 GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTPEYVLLP 704
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BLAST of mRNA_Ecto-sp13_S_contig9743.21385.1 vs. uniprot
Match: A0A6H5LRL5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 7.370e-20
Identity = 50/75 (66.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:   10 GYRKRGEQAESDNYRIDRLGKTFLSHLGQRRKERLTIGNRSCENNAPSSRGRVINGLTAKASST*EYAPCPPACR 234
            G+R+  E+A  D  RIDRLGKTFLSHL Q RKERL IG+RSC NNAPSSRGRV+NGLTAKA  T    P  P  R
Sbjct:  384 GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTQRVRPPHPPHR 458
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BLAST of mRNA_Ecto-sp13_S_contig9743.21385.1 vs. uniprot
Match: A0A6H5L729_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L729_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.010e-19
Identity = 50/78 (64.10%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:   10 GYRKRGEQAESDNYRIDRLGKTFLSHLGQRRKERLTIGNRSCENNAPSSRGRVINGLTAKASST*EYAPC----PPAC 231
            G+R+  E+A  D  RIDRLGKTFLSHL Q RKERL I +RSC NNAPSSR RV+N LTAKA  T EY P     PP C
Sbjct:  255 GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIRDRSCGNNAPSSRARVVNDLTAKACKTEEYVPSLPNLPPLC 332
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BLAST of mRNA_Ecto-sp13_S_contig9743.21385.1 vs. uniprot
Match: A0A6H5JCQ0_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.710e-19
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:   10 GYRKRGEQAESDNYRIDRLGKTFLSHLGQRRKERLTIGNRSCENNAPSSRGRVINGLTAKASST 201
            G+R+  E+A  D  RIDRLGKTFLSHL Q RKERL IG+RSC NNAPSSRGRV+NGLTAK   T
Sbjct:  200 GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTCKT 263
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9743.21385.1 vs. uniprot
Match: A0A6H5KJX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.810e-19
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:   10 GYRKRGEQAESDNYRIDRLGKTFLSHLGQRRKERLTIGNRSCENNAPSSRGRVINGLTAKASST 201
            G+R+  E+A     RIDRLGKTFLSHL Q RKERL  G+RSC NNAPSSRGRV+NGLTAKA  T
Sbjct:  107 GHRRWVEKAGRGIVRIDRLGKTFLSHLWQSRKERLAFGDRSCGNNAPSSRGRVVNGLTAKACKT 170
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BLAST of mRNA_Ecto-sp13_S_contig9743.21385.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 3.570e-19
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:   10 GYRKRGEQAESDNYRIDRLGKTFLSHLGQRRKERLTIGNRSCENNAPSSRGRVINGLTAKASST 201
            G+R+  E+A  D  RIDRLGKTFLSHL Q RKERL IG+RSC NNAPSSRGRV+NGLTAKA  T
Sbjct:  435 GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 498
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9743.21385.1 vs. uniprot
Match: A0A6H5L4L1_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L1_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.190e-19
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:   10 GYRKRGEQAESDNYRIDRLGKTFLSHLGQRRKERLTIGNRSCENNAPSSRGRVINGLTAKASST 201
            G+R+  E+A  D  RIDRLGKTFLSHL Q RKERL IG+RSC NNAPSSRGRV+NGLTAKA  T
Sbjct:  720 GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 783
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9743.21385.1 vs. uniprot
Match: A0A6H5JS68_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS68_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 7.920e-19
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:   10 GYRKRGEQAESDNYRIDRLGKTFLSHLGQRRKERLTIGNRSCENNAPSSRGRVINGLTAKASST 201
            G+R+  E+A  D  RIDRLGKTFLS L QRRKERL IG+RSC NNAPSSRGRV+NGLTAKA  T
Sbjct:  867 GHRRWVEKAGRDIVRIDRLGKTFLSQLWQRRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 930
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9743.21385.1 vs. uniprot
Match: A0A6H5KUW5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.430e-18
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:   10 GYRKRGEQAESDNYRIDRLGKTFLSHLGQRRKERLTIGNRSCENNAPSSRGRVINGLTAKASST 201
            G+R+  E+A  D  RIDRLGKTFLSHL Q RKERL IG+RSC NNAPSSRGRV+NGL+AKA  T
Sbjct:  601 GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLSAKACKT 664
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9743.21385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JD24_9PHAE7.330e-2173.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE77_9PHAE1.000e-2070.42Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LRL5_9PHAE7.370e-2066.67Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L729_9PHAE1.010e-1964.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCQ0_9PHAE1.710e-1971.88Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJX4_9PHAE2.810e-1970.31Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVX2_9PHAE3.570e-1973.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4L1_9PHAE4.190e-1973.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JS68_9PHAE7.920e-1973.44Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KUW5_9PHAE1.430e-1871.88Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9743contigEcto-sp13_S_contig9743:136..502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size367
Hectar predicted targeting categoryother localisation
Exons1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464237.8367417-CDS-Ecto-sp13_S_contig9743:135..3391681464237.8367417-CDS-Ecto-sp13_S_contig9743:135..339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9743 136..339 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464237.8486402-UTR-Ecto-sp13_S_contig9743:339..5021681464237.8486402-UTR-Ecto-sp13_S_contig9743:339..502Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9743 340..502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9743.21385.1prot_Ecto-sp13_S_contig9743.21385.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9743 136..339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9743.21385.1

>prot_Ecto-sp13_S_contig9743.21385.1 ID=prot_Ecto-sp13_S_contig9743.21385.1|Name=mRNA_Ecto-sp13_S_contig9743.21385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
LCWGYRKRGEQAESDNYRIDRLGKTFLSHLGQRRKERLTIGNRSCENNAP
SSRGRVINGLTAKASST*
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mRNA from alignment at Ecto-sp13_S_contig9743:136..502+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9743.21385.1 ID=mRNA_Ecto-sp13_S_contig9743.21385.1|Name=mRNA_Ecto-sp13_S_contig9743.21385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=367bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9743:136..502+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTGCTGGGGGTATAGGAAGCGAGGTGAACAGGCGGAAAGTGATAACTA
TAGGATAGATAGACTAGGGAAGACATTTTTGAGCCACCTTGGGCAAAGGA
GGAAGGAACGATTGACCATCGGCAATCGGTCCTGTGAGAACAATGCTCCG
TCCTCTCGAGGACGCGTGATCAACGGTCTAACCGCTAAGGCAAGCAGCAC
ATAAGAGTACGCCCCCTGCCCGCCTGCCTGTCGCAAATGTGCGTGATTTT
TCCTTCCGCCTCACCAGGCGTAAACACGCAATATACCGAGAATCCTGCCG
GAATATCACGAAACACCACTCCTTTTCACCAGGCGCAACCACGGAATAGG
AACCTCCCAGAATACCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9743:136..502+

>mRNA_Ecto-sp13_S_contig9743.21385.1 ID=mRNA_Ecto-sp13_S_contig9743.21385.1|Name=mRNA_Ecto-sp13_S_contig9743.21385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9743:136..502+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTGCTGGGGGTATAGGAAGCGAGGTGAACAGGCGGAAAGTGATAACTA
TAGGATAGATAGACTAGGGAAGACATTTTTGAGCCACCTTGGGCAAAGGA
GGAAGGAACGATTGACCATCGGCAATCGGTCCTGTGAGAACAATGCTCCG
TCCTCTCGAGGACGCGTGATCAACGGTCTAACCGCTAAGGCAAGCAGCAC
ATAA
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