mRNA_Ecto-sp13_S_contig974.21382.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig974.21382.1
Unique NamemRNA_Ecto-sp13_S_contig974.21382.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig974.21382.1 vs. uniprot
Match: D7FY24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY24_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.040e-35
Identity = 86/165 (52.12%), Postives = 87/165 (52.73%), Query Frame = 1 
Query:   97 ALERGLRAVARGTRVAETIKADVVISTGGGTCAFQLHANFSHGHVAEAVSRARGLAAGFERCYVLLVRPNTDALRNFQLQLSPACDARVLLLPSEELLVPEIQRVSQGIFKATAGGQRREYYKQLHQKLRLDHPHRGILAELLRGLGVPDWRQEADLLLDAFGSI 591
            ALERGLRAVARGTRV+ TIKADVVISTGGGTCAFQLH NFSHGHVAEA                                                                            LHQKLRLDHPHRGILAELLRGLGVPDWRQEADLLLDAFGSI
Sbjct:    4 ALERGLRAVARGTRVSGTIKADVVISTGGGTCAFQLHTNFSHGHVAEA----------------------------------------------------------------------------LHQKLRLDHPHRGILAELLRGLGVPDWRQEADLLLDAFGSI 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig974.21382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY24_ECTSI2.040e-3552.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig974contigEcto-sp13_S_contig974:14895..19953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1658
Hectar predicted targeting categoryother localisation
Exons6
Cds size771
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig974.21382.1prot_Ecto-sp13_S_contig974.21382.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig974 14895..19066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464237.5409448-CDS-Ecto-sp13_S_contig974:14894..149911681464237.5409448-CDS-Ecto-sp13_S_contig974:14894..14991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig974 14895..14991 +
1681464237.552212-CDS-Ecto-sp13_S_contig974:16113..161831681464237.552212-CDS-Ecto-sp13_S_contig974:16113..16183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig974 16114..16183 +
1681464237.5642955-CDS-Ecto-sp13_S_contig974:16688..168511681464237.5642955-CDS-Ecto-sp13_S_contig974:16688..16851Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig974 16689..16851 +
1681464237.575477-CDS-Ecto-sp13_S_contig974:17548..176861681464237.575477-CDS-Ecto-sp13_S_contig974:17548..17686Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig974 17549..17686 +
1681464237.5861826-CDS-Ecto-sp13_S_contig974:18241..183661681464237.5861826-CDS-Ecto-sp13_S_contig974:18241..18366Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig974 18242..18366 +
1681464237.5966797-CDS-Ecto-sp13_S_contig974:18888..190661681464237.5966797-CDS-Ecto-sp13_S_contig974:18888..19066Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig974 18889..19066 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464237.6076012-UTR-Ecto-sp13_S_contig974:19066..199531681464237.6076012-UTR-Ecto-sp13_S_contig974:19066..19953Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig974 19067..19953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig974.21382.1

>prot_Ecto-sp13_S_contig974.21382.1 ID=prot_Ecto-sp13_S_contig974.21382.1|Name=mRNA_Ecto-sp13_S_contig974.21382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=257bp
MAGRGDDAVVAGTGRTEISNAIAIMHPRIIGTALERGLRAVARGTRVAET
IKADVVISTGGGTCAFQLHANFSHGHVAEAVSRARGLAAGFERCYVLLVR
PNTDALRNFQLQLSPACDARVLLLPSEELLVPEIQRVSQGIFKATAGGQR
REYYKQLHQKLRLDHPHRGILAELLRGLGVPDWRQEADLLLDAFGSIRGV
CLQPLSALLSDCPIAGETAATLHAFFNEKSAAPLPCAMCPGAAGGCRLLV
APSPPP*
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mRNA from alignment at Ecto-sp13_S_contig974:14895..19953+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig974.21382.1 ID=mRNA_Ecto-sp13_S_contig974.21382.1|Name=mRNA_Ecto-sp13_S_contig974.21382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5059bp|location=Sequence derived from alignment at Ecto-sp13_S_contig974:14895..19953+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGGACGCGGAGATGATGCAGTAGTAGCTGGCACCGGCAGGACAGA
AATCTCCAATGCTATTGCAATCATGCACCCTCGCATCATTGGCACAGGTT
GGTCCATGTTTGCTATCGAAATAGAGCGAGTGAACGGGCCACTTTCCGCG
TCTTCTCATGTTTTTAGCGGGTTGGAAACACAGCTTGTTTTCCGAGTAAG
CCTCTCGCGACTCCGCACGTCCCAAGCCGGAAAAAGAGAGAAGTTGATTA
CGCAGAGACCAGCCCTTTTGCGTTGTGGAGGCGGAGTCACCTGGTCACAC
ACATGATCTGCAAAGGCTAAAATTTGAAATATTTGGACTCCGAGCTGTGA
TGGTGCTCATCATCATCAGTGACCAAGCGGTAGTAATATCTTTCACCGCG
AACGCATCACGAAGAGACAAATAGGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACTGACTTTGATAGCCCGAT
TGCTCCATGGCCATGAAGTTGCCGATGCCGAAATGGGGTGGTATCGAAAA
CAATCCAACGAGAGGTTTCCTGGTAAGTTGTTCGGTTCAAGCATTCTTCT
TTGTTGAGCAACCAGCTTTGATTCTCCGGGATGTGCAATGGCTCGCACCT
TTGTGGTATGCGCGTGCGCGATACGATCGCATGCGGAACGTGCCGCGCGG
CAATGACCTCTCTCTATCTCTCTCGCTCCCTCCCTCCCTCCCTCCCTCTC
CCCACCTATCACACCTATCTCGGTATGCACACCTATTGCGATATAGCGCG
TGTACACCACCCTAGGGTGACCAATCGACGACGTTGAAGTAGTGCCGCAA
GTACGCCAACGGACAGCGGTGATCTCAGACAGCCAGGCCTACACCCGACA
CACCGAACGGAAGCACACTTTACCACAATCACCACCGATACCCAACGTTA
TTGTCGCCAATGTCCCCAGCGCTCGAGAGAGGCTTGCGCGCGGTGGCGAG
GGGGACCCGCGTAGCGGAGACGATCAAGGCCGACGTTGTGTGAGTGATAC
TTGCAAATCCTCAAGCCGTTTCGCACCTTTTGTTCTCCAGATCCTTCTCG
TTGTGGTCGTCACGACAAAACGCGCAGTGACGGCGCCGCCCGATGTTTCG
GATGTCTTGTTTCGCCCGTGAGTGCATTGGTCAACAACGTCTCGCTGGGG
CTAGCTGTCATTGTTGCCTGCACGTTAAAATGAAACCCTTGTAGGTTGAC
TTCTCCCTGCTATCCTACTCCCTCTCACGAAAGCCCTGTGCTGGTCTTTC
CCTTCTAGGTTCCACCCTCACCATCTCTCGTCTCGACGGTAGTAGTGTAG
TACTTCGAGGTTGCACAATGGGCTTTCAAGACCAAACGGATGGTTGCAAC
ACGAAGCCGGCGACGACATTTTCCGTCCCTACAACCTCCTGTGAAAAGGC
AGTATTGCGTATTCTGCGCGCGCCCTCCAGGGGAGCTGTTCTAACACCTC
TTTGCCTCCGCGAATTTTGATGCACCCCTGCAACGGAAAAACAGCATCAG
CACGGGGGGAGGCACCTGCGCCTTCCAGCTCCACGCCAACTTTAGCCACG
GCCACGTCGCCGAGGCCGTGAGTCGTGCTCGCGGCCTGGCCGCCGGGTTC
GAGAGGTGCTACGTCTTGCTGGTCCGTCCGAACACCGACGCTCTGCGAAA
CTTCCAGGCAAATGAAGAGCAGCGCGCGCCCACGTTAGCGTGCAACCGAA
GGGGCGAACGTTATTGTGGTTGGTTGTTGGCGGTGCAACAACCTCCCGCT
TTCTGGACTACGACCCAGGCGGTGTTGTGTGCGCGGGCAGTGAACCCCCG
CCTGGATTTCACGTAGTGTGCAACCGCGAAAACTCTTTTTCGTACCCGAA
AGGGTTTGCTCTACAAGGTCGGGAGTTGGAGGTGTGACTGGCGTACTTTT
TTTACCCCCACCTGCAAGCACGTGGTCCCGTCGTGAGGCGTGCTGGCCCG
ACGAGATAGCTAAATTGGCGGGAAGGGCCCGGGGTACAGTACTGGAAACT
GACCTGCAGCGGTGGGCGGTGCCTAGCTGTGAAGGCCTTCGCCTGCGTCA
AGAACTTGTGACACACTTCGGTTGGATGTTGTGTCCTTCATGAAGCGTCT
CGTAAATTGATTCCTTCTCTCAAGAATTCCCCACAGACATCGATGCTCCC
ACAATCGATGCCCCCTCCCTGCCCCCTTCCGTCATGTACCAAGCCGAGCC
TTAGAGTCAAGTCGTCGTCTCGAAGCTCAGCTCCTCAGGTGCCAGCGAAC
CCCCCCTCTCCTCCCCCTTCCTGCTTTCAACCGACGCCCCTTCTCCTATA
AATTAACACCCTCCCTCGCATGCCGAAACTTGTAACTCATATTTTCTTTG
GCAGCTTCAGTTGTCTCCTGCCTGCGACGCCAGGGTCCTGCTGCTTCCCT
CGGAGGAGCTCCTTGTGCCCGAGATCCAGAGGGTGTCCCAGGGGATCTTC
AAAGCCACTGCGGGAGGCCAGAGAAGGGAGTACTACAAGCAGGCGAGCTA
CGACGGGAAACAGTAGTCGTTGTTGTTGTTGTTGTTGTTGTTCCTGTTCT
TGTTCCTGTCCTTGGTCTGGTTCTCGTTCTTGGTGGTGGTGGTGGTGGTG
GTGACTATGACGATGATTGTCCGTCCTGTTGGTGCCCACTCGCCATACAC
GGGGTCGGGTGTGCCCGCCGCCTGGTAGATATTGGCATGAACAGGGTAGT
CGGCGCACGCCCAGATTATTGTCCCGTCCGCCTGACAGCTTCGCCAACAC
CATGGTGATATCGTTGCCCGTGTAGAAACCGATCTACATCTATGCACTCT
ACATCTGTGCACATACAGCTACCTCCTCGACGACAGGGTCATTATTTTTT
CGCACCAACCTGCAGGGTTTGTTCCATCGACGGTGCGGGTACGTTCTCTT
CTCTCGATTTTGTTTCCACGCCGGAAAAGCAAGCCACGATACCTCCAGTT
CCAACACAGCCTCCTCGTAGTATGCATAGGCTATGGCATCGGTGCTTCAA
ACAGCGGCATATGTGCGTACGCGTTTTTCACTATCCTTTCTCTTCAGTTG
CACCAAAAGCTTCGTCTCGACCATCCGCACCGAGGCATTCTCGCGGAGCT
CCTGAGGGGCTTGGGCGTGCCGGATTGGCGGCAAGAGGCGGACCTGCTGC
TGGACGCGTTCGGTTCTATCAGGTGCCTCTCGTGTTGTTGTTGTTGCTGC
TGCTGCTGCTGCTGATGCCGATGCTGATGCCGACGCTGCTTCTTTTGTGG
TGGTGACATGGTTGTTGTTGTTGTTGGTGTTGTTGTTGTTGGTGCTGCTG
CTGCTGTAACTTTGTTGCTGTTGCCGTTGTCATGTTGTCGTCCTGAAGTT
GTTGTTTCACGTTTTGGCCGTTCCAATGTGTACCCAGTCGTGAGTTAATT
TTTTTCCGTCCCAAAGGCTGTGTATGCGGATATGTCGTTACACCAACCAA
CACGCCGAAACGTGGAACCTATCCTTTTTTAGCGACCCAAATTGCTTACT
CGCTCGGCATCACCCCTCCCTTCTTCTTCGCACGCCTGTTCCTCTGGACT
GGCTTGTCATCCACGATAATAACGTTCACTTCTAATGTGCCTGCTCAACA
CGTCATGATTTTTGGATGCCCCCCCAACGTCACCCACGATGCCGGGCCGC
ACTCCCGCAACGCATCCCCGAAAACCGGTACGAGAAAACAAAAGAGGCGT
GTGTCTGCAGCCGCTGTCCGCCCTGCTGTCGGACTGCCCAATAGCCGGAG
AAACGGCCGCCACCCTCCACGCCTTCTTCAACGAGAAATCCGCCGCACCG
CTGCCGTGCGCGATGTGCCCGGGGGCAGCGGGAGGCTGCCGGCTGCTGGT
TGCTCCCTCGCCCCCTCCGTAATTGCTGCACCAGGAGACTACGGCACAGT
GAGGGGCCCGGGTACTTGCCCAGTGGTTTTACCCTCAGTATCGAAGGTAC
CCGCACTTTTCAGGTGGCTTATCCACATTGATTCTTCGATCTGGACATTG
TTGTACAGTTGCTGTTTTTTTCCGTAGACACTACTGTAGGGGGACACGTC
TGTTGTTGCGATAAGGGGGAGAGTTTGCATGGCGTATGCACCGGAAGGTT
GTGCGTCGTGTACGGGAGGGGAGACACTTGTCGGCTCGCGCTCGCGGTTG
CTCCATGTGTTGCCCGCCTGAGGAATGAAACACTTTTTTCCCGCCGAAGC
ACCCTCAAGTCGTCAAGTATAACTGACTGCTGTGTCGATTATGAGGTGCA
AATTGTTGCGTTTTCCGATGTTGTCATTATCAGGTTTAGGCTGGATGACT
CCTATCATTGCAGTCTGCCGCCGATGATTTCACTTGCTATTATTCCTGCC
AAATTTTTCAACTTGTGGGGATTGGAAGCTGGATATCCTACTGGGGCTGG
TTGGAATTTTTGGTCCGTCTTACCTGTTCCTATTTTGACGGCTATTCCGG
CTACGTTTGTCTGCAACGCGTGCTACTACGCACATTATCTTTTCGCACAG
TCAAACGGAAAGGGAAGGTGTTTTTTATTGGTGGCTACTACTCTGGTGTT
CCTACAAGACGGGGAGCTACCGAAGCTACACACCTCGCCGTGGGAAAAAA
CGACTTCATCCAGACCGTAGTTGACCTGTTTGTGTGTACATACGACGCGC
TGTCTTCCTCTGGCTATTCAGAAATTCTGACAAGCATTGACATTAAAAAA
AAAGTGGCTTGCGATTTAGACTAGGAGGAGATATTCCTTGTTTCTTCACG
AGCACAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig974:14895..19953+

>mRNA_Ecto-sp13_S_contig974.21382.1 ID=mRNA_Ecto-sp13_S_contig974.21382.1|Name=mRNA_Ecto-sp13_S_contig974.21382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig974:14895..19953+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGGACGCGGAGATGATGCAGTAGTAGCTGGCACCGGCAGGACAGA
AATCTCCAATGCTATTGCAATCATGCACCCTCGCATCATTGGCACAGCGC
TCGAGAGAGGCTTGCGCGCGGTGGCGAGGGGGACCCGCGTAGCGGAGACG
ATCAAGGCCGACGTTGTCATCAGCACGGGGGGAGGCACCTGCGCCTTCCA
GCTCCACGCCAACTTTAGCCACGGCCACGTCGCCGAGGCCGTGAGTCGTG
CTCGCGGCCTGGCCGCCGGGTTCGAGAGGTGCTACGTCTTGCTGGTCCGT
CCGAACACCGACGCTCTGCGAAACTTCCAGCTTCAGTTGTCTCCTGCCTG
CGACGCCAGGGTCCTGCTGCTTCCCTCGGAGGAGCTCCTTGTGCCCGAGA
TCCAGAGGGTGTCCCAGGGGATCTTCAAAGCCACTGCGGGAGGCCAGAGA
AGGGAGTACTACAAGCAGTTGCACCAAAAGCTTCGTCTCGACCATCCGCA
CCGAGGCATTCTCGCGGAGCTCCTGAGGGGCTTGGGCGTGCCGGATTGGC
GGCAAGAGGCGGACCTGCTGCTGGACGCGTTCGGTTCTATCAGAGGCGTG
TGTCTGCAGCCGCTGTCCGCCCTGCTGTCGGACTGCCCAATAGCCGGAGA
AACGGCCGCCACCCTCCACGCCTTCTTCAACGAGAAATCCGCCGCACCGC
TGCCGTGCGCGATGTGCCCGGGGGCAGCGGGAGGCTGCCGGCTGCTGGTT
GCTCCCTCGCCCCCTCCGTAA
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