mRNA_Ecto-sp13_S_contig9739.21380.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9739.21380.1
Unique NamemRNA_Ecto-sp13_S_contig9739.21380.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9739.21380.1 vs. uniprot
Match: D7FHZ5_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ5_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.650e-6
Identity = 32/57 (56.14%), Postives = 36/57 (63.16%), Query Frame = -3 
Query:  736 MAALDKTAKNGRLARIVIDEAHCCSQARGETADRSRHLQRGICSTWLRHTAVMETDA 906
            MAALDKTAKNGRLARIVIDEAHCCSQ   +   R  + + GI      H  V+   A
Sbjct:   98 MAALDKTAKNGRLARIVIDEAHCCSQWGHDF--RPEYCKLGILKRQFAHVPVLAVTA 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9739.21380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHZ5_ECTSI2.650e-656.14ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9739contigEcto-sp13_S_contig9739:1792..2699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size908
Hectar predicted targeting categoryother localisation
Exons1
Cds size552
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464237.4176989-CDS-Ecto-sp13_S_contig9739:1791..23431681464237.4176989-CDS-Ecto-sp13_S_contig9739:1791..2343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9739 1792..2343 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464237.4327238-UTR-Ecto-sp13_S_contig9739:2343..26991681464237.4327238-UTR-Ecto-sp13_S_contig9739:2343..2699Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9739 2344..2699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9739.21380.1prot_Ecto-sp13_S_contig9739.21380.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9739 1792..2343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9739.21380.1

>prot_Ecto-sp13_S_contig9739.21380.1 ID=prot_Ecto-sp13_S_contig9739.21380.1|Name=mRNA_Ecto-sp13_S_contig9739.21380.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp
QQHRVRDGQIVVLTVATWGATQEGGRGGCKQARSQKRQSGRPTSSTCEPV
RLRAGELTRVRSIDCARLIAPQRGTSHPRNGWWTRRRARNPTATCKESSA
DLSGKTLFGVLRPRLLVVDQSSSKTRSVSPLLRSPAHLTVHETAFHFLLD
IMIAISRNETIGCPESEKDVYADKADVKSTLGK*
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mRNA from alignment at Ecto-sp13_S_contig9739:1792..2699+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9739.21380.1 ID=mRNA_Ecto-sp13_S_contig9739.21380.1|Name=mRNA_Ecto-sp13_S_contig9739.21380.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=908bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9739:1792..2699+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCAGCATAGAGTACGGGACGGGCAAATAGTTGTTCTAACGGTGGCGAC
CTGGGGGGCAACGCAGGAGGGAGGGAGAGGGGGTTGCAAACAGGCAAGAA
GCCAGAAGAGACAGTCCGGACGCCCAACAAGTAGCACGTGCGAGCCTGTA
AGATTACGTGCGGGCGAACTCACACGTGTGCGTTCGATCGACTGTGCAAG
ATTGATTGCTCCACAAAGAGGGACGAGTCACCCACGGAACGGGTGGTGGA
CCAGACGGAGGGCGCGAAACCCGACCGCTACGTGCAAGGAAAGCTCGGCG
GATCTTTCTGGAAAGACACTTTTCGGCGTTTTGCGGCCTAGATTGTTGGT
TGTGGATCAATCGAGCTCCAAAACGCGATCGGTCTCACCCCTGTTGCGTT
CGCCCGCGCATTTAACGGTACACGAAACGGCATTTCATTTCCTACTCGAT
ATCATGATCGCGATCTCAAGAAATGAGACGATCGGTTGCCCCGAAAGCGA
AAAGGACGTCTACGCCGACAAGGCCGATGTAAAAAGCACGCTTGGAAAAT
AGAGCGGTTACCAGCTCGAAACCTCCATGGGAGAACAACAAGGTGGGTGA
GGGTGCACCAACTTGACCAAGCGTGTGGGTACTTGAAAAGGGCTACGCGA
CGACGCACGGTGTGTCTCTGTTGCACAGCACCGCCGTCTGTGGGAGGGAG
CACGCGGTACATCGGTAGGCGTATCAGTTCGAAAACGCGTCCGTTTCCAT
CACAGCCGTGTGTCTCAGCCAAGTACTACAGATGCCACGTTGTAGGTGTC
GAGATCGATCGGCGGTCTCTCCCCTTGCCTGCGAGCAGCAGTGCGCCTCG
TCGATGACGATCCTGGCCAGCCGGCCATTCTTGGCGGTCTTGTCCAACGC
TGCCATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9739:1792..2699+

>mRNA_Ecto-sp13_S_contig9739.21380.1 ID=mRNA_Ecto-sp13_S_contig9739.21380.1|Name=mRNA_Ecto-sp13_S_contig9739.21380.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9739:1792..2699+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCAGCATAGAGTACGGGACGGGCAAATAGTTGTTCTAACGGTGGCGAC
CTGGGGGGCAACGCAGGAGGGAGGGAGAGGGGGTTGCAAACAGGCAAGAA
GCCAGAAGAGACAGTCCGGACGCCCAACAAGTAGCACGTGCGAGCCTGTA
AGATTACGTGCGGGCGAACTCACACGTGTGCGTTCGATCGACTGTGCAAG
ATTGATTGCTCCACAAAGAGGGACGAGTCACCCACGGAACGGGTGGTGGA
CCAGACGGAGGGCGCGAAACCCGACCGCTACGTGCAAGGAAAGCTCGGCG
GATCTTTCTGGAAAGACACTTTTCGGCGTTTTGCGGCCTAGATTGTTGGT
TGTGGATCAATCGAGCTCCAAAACGCGATCGGTCTCACCCCTGTTGCGTT
CGCCCGCGCATTTAACGGTACACGAAACGGCATTTCATTTCCTACTCGAT
ATCATGATCGCGATCTCAAGAAATGAGACGATCGGTTGCCCCGAAAGCGA
AAAGGACGTCTACGCCGACAAGGCCGATGTAAAAAGCACGCTTGGAAAAT
AG
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