mRNA_Ecto-sp13_S_contig9737.21376.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9737.21376.1
Unique NamemRNA_Ecto-sp13_S_contig9737.21376.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9737.21376.1 vs. uniprot
Match: D7FMQ9_ECTSI (Aquarius intron-binding protein similar to aquarius n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ9_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 2.920e-101
Identity = 174/191 (91.10%), Postives = 176/191 (92.15%), Query Frame = 1
Query:   79 TLAMGPPYVPGGTTAATVGARKKSSGRAKGKGGAGHRTGAAVPVGAAAAGERKRKRTGGLVTITEINEDELMAVANQNWAPGSKAAAKGSFKPKLVSTIYRKELRSCMPTPGARAGPESSSRLQLLEFSAFLENYLWPNFDADKSSTEHLMSTILLINSKFHEGVSVWESLGISEGRLGNLPVTADASSSN 651
            TLA GPPYVPGG TAAT GA KKS G+      AGHR GA VP GAAAAGERKRKRTGGLVTITEINEDELMAVANQNWAPGSKAAAKGSFKPKLVSTIYRKELRSCMPTPGARAGPESSSRLQLLEFSAFLENYLWPNFDA KSSTEHLMSTILLINSKFHEGVSVWESLGISEGRLGNLPVTADASSS+
Sbjct:  261 TLARGPPYVPGGITAATGGAGKKSPGKXXXXXXAGHRAGAPVPAGAAAAGERKRKRTGGLVTITEINEDELMAVANQNWAPGSKAAAKGSFKPKLVSTIYRKELRSCMPTPGARAGPESSSRLQLLEFSAFLENYLWPNFDAKKSSTEHLMSTILLINSKFHEGVSVWESLGISEGRLGNLPVTADASSSS 451          
BLAST of mRNA_Ecto-sp13_S_contig9737.21376.1 vs. uniprot
Match: A0A835YQ44_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ44_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.390e-25
Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = 1
Query:  298 VANQNWAPGS-KAAAKGSFKPKLVSTIYRKELRSCMPTPGARAGPESSSRLQLLEFSAFLENYLWPNFDADKSSTEHLMSTILLINSKFHEGVSVWESLGI 597
            +A+QNWA G+ + A K +  P LV+ IY++EL SC P PG RA   ++ RLQLLE +++LENYLWP+F A KSS  H+MS +L+ N KF  G S W+++G+
Sbjct:    1 LAHQNWAAGAPENACKNTISPSLVTKIYKEELHSCGPGPGRRAAANANRRLQLLEVTSYLENYLWPHFHATKSSLPHVMSIVLMANEKFARGFSFWDAVGV 101          
BLAST of mRNA_Ecto-sp13_S_contig9737.21376.1 vs. uniprot
Match: A0A2K3DR41_CHLRE (Uncharacterized protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3DR41_CHLRE)

HSP 1 Score: 106 bits (264), Expect = 2.290e-22
Identity = 53/119 (44.54%), Postives = 76/119 (63.87%), Query Frame = 1
Query:  229 ERKRKRTGGLVTITEINEDELMAVANQNWAPGSKAAAKG-SFKPKLVSTIYRKELRSCMPTPGARAGPESSSRLQLLEFSAFLENYLWPNFDADKSSTEHLMSTILLINSKFHEGVSVW 582
            +++ +R  G +T+TEI ED+L   A Q W+  ++A     +FKP+LV TIY++EL       GA        R+ LLE S +LENYLWPNFD +K++ EH+MS +L++N KF EGV  W
Sbjct:  102 QQQPQRPRGGLTLTEIAEDKLTKTAKQEWSNEARAQENPPAFKPELVQTIYKQELG------GASKRAPGHKRIMLLEISQYLENYLWPNFDVEKATFEHVMSLVLMVNEKFREGVPAW 214          
BLAST of mRNA_Ecto-sp13_S_contig9737.21376.1 vs. uniprot
Match: A0A8J4B3V0_9CHLO (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4B3V0_9CHLO)

HSP 1 Score: 105 bits (261), Expect = 5.720e-22
Identity = 53/115 (46.09%), Postives = 74/115 (64.35%), Query Frame = 1
Query:  241 KRTGGLVTITEINEDELMAVANQNWAPGSKAA-AKGSFKPKLVSTIYRKELRSCMPTPGARAGPESSSRLQLLEFSAFLENYLWPNFDADKSSTEHLMSTILLINSKFHEGVSVW 582
            K+ G L+T+ EI  D+L  +A +NW+  ++A     +FKPKLVS+IYR+EL       GA     S  R+ LLE S +LENYLWPNFD + ++ EH+MS +L++N KF E V  W
Sbjct:   77 KQPGSLLTVAEIVTDKLTRIARKNWSNAARARDPPPAFKPKLVSSIYREELG------GASMRGPSFKRVMLLEVSQYLENYLWPNFDPETATFEHVMSIVLMVNEKFRENVPAW 185          
BLAST of mRNA_Ecto-sp13_S_contig9737.21376.1 vs. uniprot
Match: D8TS23_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TS23_VOLCA)

HSP 1 Score: 103 bits (257), Expect = 1.940e-21
Identity = 52/115 (45.22%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  241 KRTGGLVTITEINEDELMAVANQNWAPGSKAA-AKGSFKPKLVSTIYRKELRSCMPTPGARAGPESSSRLQLLEFSAFLENYLWPNFDADKSSTEHLMSTILLINSKFHEGVSVW 582
            K+ G L+T+ EI  D+L  +A +NW+  ++A     +FKPKLVS+IYR EL       GA     S  R+ LLE S +LENYLWPNFD + ++ EH+MS +L++N KF E +  W
Sbjct:  106 KQAGSLLTVAEIVTDKLTKLAQRNWSNAARARHPPPTFKPKLVSSIYRDELG------GAGTRGPSFKRVMLLEVSQYLENYLWPNFDPETATFEHVMSIVLMVNEKFRENIPAW 214          
BLAST of mRNA_Ecto-sp13_S_contig9737.21376.1 vs. uniprot
Match: A0A182NDY5_9DIPT (Aquarius_N domain-containing protein n=1 Tax=Anopheles dirus TaxID=7168 RepID=A0A182NDY5_9DIPT)

HSP 1 Score: 99.8 bits (247), Expect = 3.620e-21
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  253 GLVTITEINEDELMAVANQNWAPGSKAAAKGSFKPKLVSTIYRKELRSCMPTPGARAGPESSSRLQLLEFSAFLENYLWPNFDADKSSTEHLMSTILLINSKFHEGVSVWE 585
            G +TI++IN DE+  +AN+ WAP + A A   + P+++  IYRKE+              S  R+ +LEFS +LENYLWPNFD + +S  HLMS + ++N KF E V +W+
Sbjct:   17 GAITISQINADEITFLANRFWAPDT-ANAHEPYNPQIIEDIYRKEICDTR---------HSLRRIMMLEFSQYLENYLWPNFDGENASRAHLMSIVAMVNEKFREKVEIWK 117          
BLAST of mRNA_Ecto-sp13_S_contig9737.21376.1 vs. uniprot
Match: A0A7I8KEV2_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KEV2_SPIIN)

HSP 1 Score: 102 bits (254), Expect = 4.720e-21
Identity = 51/111 (45.95%), Postives = 72/111 (64.86%), Query Frame = 1
Query:  253 GLVTITEINEDELMAVANQNWAPGSKAAAKG-SFKPKLVSTIYRKELRSCMPTPGARAGPESSSRLQLLEFSAFLENYLWPNFDADKSSTEHLMSTILLINSKFHEGVSVW 582
            G +T++EI  D L  +A  NWA G++AAA G  FKP+LV  IY  EL   + + G +  P    R+ +LE S +LENYLWP+FD + +S EH+MS +L++N KF E V+ W
Sbjct:   48 GSITLSEIQRDRLTKIAAANWAKGAEAAAGGREFKPELVREIYETEL---LVSDGRKTVP--LQRVMILEVSQYLENYLWPHFDPETASFEHIMSMVLMVNEKFRENVAAW 153          
BLAST of mRNA_Ecto-sp13_S_contig9737.21376.1 vs. uniprot
Match: A0A150GH76_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GH76_GONPE)

HSP 1 Score: 102 bits (254), Expect = 4.840e-21
Identity = 54/121 (44.63%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  223 AGERKRKRTGGLVTITEINEDELMAVANQNWAPGSKAAAKG-SFKPKLVSTIYRKELRSCMPTPGARAGPESSSRLQLLEFSAFLENYLWPNFDADKSSTEHLMSTILLINSKFHEGVSVW 582
            A ++ +K  G  +T+ EI  D+L  +A +NW+   ++  K  +F PKLV  IYR+EL        +  GP S  R+ LLE S +LENYLWPNFD D +S EH+MS +L++N KF EGV  W
Sbjct:  106 AAQQTQKTAGSTLTVAEIATDKLTRLARRNWSIEVQSKEKPPAFNPKLVVQIYRQELGGA-----SNRGP-SLKRIMLLEVSLYLENYLWPNFDPDTASFEHVMSLLLMVNEKFREGVPAW 220          
BLAST of mRNA_Ecto-sp13_S_contig9737.21376.1 vs. uniprot
Match: A0A182JI35_9DIPT (Aquarius_N domain-containing protein n=2 Tax=Anopheles TaxID=44482 RepID=A0A182JI35_9DIPT)

HSP 1 Score: 99.4 bits (246), Expect = 5.360e-21
Identity = 46/111 (41.44%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  253 GLVTITEINEDELMAVANQNWAPGSKAAAKGSFKPKLVSTIYRKELRSCMPTPGARAGPESSSRLQLLEFSAFLENYLWPNFDADKSSTEHLMSTILLINSKFHEGVSVWE 585
            G +T+++IN DE+  +AN+ WAP + A A   + P+++  +YRKE+              S  R+ +LEFS +LENYLWPNFD +++S  HLMS + ++N KF E V VW+
Sbjct:   17 GAITLSQINADEITFLANRFWAPDT-ANAHEPYNPQVIEDVYRKEICDTR---------HSLRRIMMLEFSQYLENYLWPNFDGERASRAHLMSIVAMVNEKFREKVEVWK 117          
BLAST of mRNA_Ecto-sp13_S_contig9737.21376.1 vs. uniprot
Match: A0A182MNY7_9DIPT (Aquarius_N domain-containing protein n=3 Tax=Cellia TaxID=44534 RepID=A0A182MNY7_9DIPT)

HSP 1 Score: 99.4 bits (246), Expect = 5.800e-21
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  253 GLVTITEINEDELMAVANQNWAPGSKAAAKGSFKPKLVSTIYRKELRSCMPTPGARAGPESSSRLQLLEFSAFLENYLWPNFDADKSSTEHLMSTILLINSKFHEGVSVWE 585
            G +TI++IN DE+  +AN+ WAP + A A  ++ P+++  IYRKE+              S  R+ +LEFS +LENYLWPNFD   +S  HLMS + ++N KF E V VW+
Sbjct:   18 GAITISQINADEITFLANRFWAPDT-ANAHEAYNPQIIEDIYRKEICDTR---------HSLRRIMMLEFSQYLENYLWPNFDGQGASRAHLMSIVAMVNEKFREKVEVWK 118          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9737.21376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMQ9_ECTSI2.920e-10191.10Aquarius intron-binding protein similar to aquariu... [more]
A0A835YQ44_9STRA4.390e-2550.50Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A2K3DR41_CHLRE2.290e-2244.54Uncharacterized protein n=3 Tax=Chlamydomonas TaxI... [more]
A0A8J4B3V0_9CHLO5.720e-2246.09Uncharacterized protein n=2 Tax=Volvox TaxID=3066 ... [more]
D8TS23_VOLCA1.940e-2145.22Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A182NDY5_9DIPT3.620e-2142.34Aquarius_N domain-containing protein n=1 Tax=Anoph... [more]
A0A7I8KEV2_SPIIN4.720e-2145.95Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A150GH76_GONPE4.840e-2144.63Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A182JI35_9DIPT5.360e-2141.44Aquarius_N domain-containing protein n=2 Tax=Anoph... [more]
A0A182MNY7_9DIPT5.800e-2143.24Aquarius_N domain-containing protein n=3 Tax=Celli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9737contigEcto-sp13_S_contig9737:3035..4500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score332.4
Seed ortholog evalue1.8e-88
Seed eggNOG ortholog2880.D7FMQ9
Model size753
KEGG koko:K12874
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0071014,GO:0071704,GO:0090304,GO:1901360,GO:1990904
Exons3
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG1806@1,KOG1806@2759
Cds size753
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464237.2005975-CDS-Ecto-sp13_S_contig9737:3034..33971681464237.2005975-CDS-Ecto-sp13_S_contig9737:3034..3397Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9737 3035..3397 +
1681464237.221642-CDS-Ecto-sp13_S_contig9737:3621..37951681464237.221642-CDS-Ecto-sp13_S_contig9737:3621..3795Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9737 3622..3795 +
1681464237.237424-CDS-Ecto-sp13_S_contig9737:4284..45001681464237.237424-CDS-Ecto-sp13_S_contig9737:4284..4500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9737 4285..4500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9737.21376.1prot_Ecto-sp13_S_contig9737.21376.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9737 3035..4500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9737.21376.1

>prot_Ecto-sp13_S_contig9737.21376.1 ID=prot_Ecto-sp13_S_contig9737.21376.1|Name=mRNA_Ecto-sp13_S_contig9737.21376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=251bp
GGRGRGGVASPGGGRGRGRGGGSGSGTLAMGPPYVPGGTTAATVGARKKS
SGRAKGKGGAGHRTGAAVPVGAAAAGERKRKRTGGLVTITEINEDELMAV
ANQNWAPGSKAAAKGSFKPKLVSTIYRKELRSCMPTPGARAGPESSSRLQ
LLEFSAFLENYLWPNFDADKSSTEHLMSTILLINSKFHEGVSVWESLGIS
EGRLGNLPVTADASSSNPSAAAAQGAAADGGDAAGTAASSAVAEPTEGSS
K
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mRNA from alignment at Ecto-sp13_S_contig9737:3035..4500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9737.21376.1 ID=mRNA_Ecto-sp13_S_contig9737.21376.1|Name=mRNA_Ecto-sp13_S_contig9737.21376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1466bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9737:3035..4500+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGGCGAGGAAGGGGGGGGGTTGCTTCCCCCGGTGGCGGTCGGGGGCG GGGACGCGGCGGCGGTAGCGGTAGCGGTACGCTGGCCATGGGACCACCTT ACGTGCCGGGGGGCACCACGGCCGCCACCGTCGGGGCGAGGAAGAAGTCG TCGGGCAGGGCGAAGGGTAAGGGCGGCGCCGGCCATCGGACCGGAGCGGC GGTGCCGGTCGGTGCTGCTGCTGCCGGCGAACGGAAGCGCAAGCGGACCG GGGGGCTAGTGACCATCACCGAGATCAACGAGGACGAGCTGATGGCGGTG GCGAACCAGAACTGGGCCCCCGGGTCCAAGGCCGCCGCAAAGGGATCTTT CAAGCCGAAGCTGGTAATGACCATATGCTACGCTGATACTGATGATATTG TTATTTATTGAAGAATTAATCTTGACACGTTGTTCGGTCATGTCGCAAAT GCAACCACCCCGAGAGCTCAACCGTTGATGAACGGAGAACCTCGCACGCA GTGACCAGGAGTACCACGAGCATGGCGTTTATCAGTACTGGGCTCCGTAC TCTTGATGTGATCCTCTTTTGTTCTCCCCCGCACAAGGTATCGACCATCT ACCGTAAGGAGCTGAGGTCTTGCATGCCCACGCCCGGCGCCCGGGCGGGA CCCGAGTCGAGCTCGCGCCTTCAGCTGCTGGAGTTCAGCGCTTTCCTGGA AAACTACTTGTGGCCCAACTTCGACGCCGACAAATCGTCCACCGAACACC TCATGAGTACGGTAAGTCTGCCTGTCTGTATGTGTGTGTGTGTCTCTCTC TCTCTCTCTCTCTCTCTCTCGTTCTTTCCTCCTCTAGCTACCTTATCGGC TGAAATCTGAGGACGACAAAGACGACGGTAGAGATGACAGCTACGCCCTC AGCACCCAGCCCCATCTGCTTTAGATTGTTCAACGCCCAGTAGTTTTTAG GTCGGACGTTGTTTTCTCACCCTTCTTTCCCATGAACCCTTTCACCCAAA AAAAAATCGCTAGAGGGTCAAAGCTCTGATCCCGCTCCTCTAGCAAATGC CGGCATCAACCCCCTCAGGAGAGCACACCCCGTTGCGACGCCCACCCACC CGCACTGGCGGGAGCTCAAGCCTCCACGTGTCGTAGGTGTTAACATGTGG GTTTACATGCAGATCGCATCACCACACACCGATTGACCTATCATTGCGTG TTTGGTATCCCTCCCTTCCCGTCCGCTCTCGTCAACGACGATGACGCCAG ATCCTCCTGATCAACTCCAAGTTCCACGAGGGGGTGAGCGTGTGGGAGTC CCTGGGCATCTCGGAGGGCCGCCTGGGAAACCTCCCCGTCACCGCAGACG CCTCCTCCTCCAACCCCTCGGCTGCTGCTGCTCAAGGAGCGGCAGCCGAT GGAGGTGACGCGGCTGGTACTGCTGCTTCGTCTGCGGTAGCAGAGCCTAC TGAGGGCAGCTCCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9737:3035..4500+

>mRNA_Ecto-sp13_S_contig9737.21376.1 ID=mRNA_Ecto-sp13_S_contig9737.21376.1|Name=mRNA_Ecto-sp13_S_contig9737.21376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9737:3035..4500+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGGCGAGGAAGGGGGGGGGTTGCTTCCCCCGGTGGCGGTCGGGGGCG
GGGACGCGGCGGCGGTAGCGGTAGCGGTACGCTGGCCATGGGACCACCTT
ACGTGCCGGGGGGCACCACGGCCGCCACCGTCGGGGCGAGGAAGAAGTCG
TCGGGCAGGGCGAAGGGTAAGGGCGGCGCCGGCCATCGGACCGGAGCGGC
GGTGCCGGTCGGTGCTGCTGCTGCCGGCGAACGGAAGCGCAAGCGGACCG
GGGGGCTAGTGACCATCACCGAGATCAACGAGGACGAGCTGATGGCGGTG
GCGAACCAGAACTGGGCCCCCGGGTCCAAGGCCGCCGCAAAGGGATCTTT
CAAGCCGAAGCTGGTATCGACCATCTACCGTAAGGAGCTGAGGTCTTGCA
TGCCCACGCCCGGCGCCCGGGCGGGACCCGAGTCGAGCTCGCGCCTTCAG
CTGCTGGAGTTCAGCGCTTTCCTGGAAAACTACTTGTGGCCCAACTTCGA
CGCCGACAAATCGTCCACCGAACACCTCATGAGTACGATCCTCCTGATCA
ACTCCAAGTTCCACGAGGGGGTGAGCGTGTGGGAGTCCCTGGGCATCTCG
GAGGGCCGCCTGGGAAACCTCCCCGTCACCGCAGACGCCTCCTCCTCCAA
CCCCTCGGCTGCTGCTGCTCAAGGAGCGGCAGCCGATGGAGGTGACGCGG
CTGGTACTGCTGCTTCGTCTGCGGTAGCAGAGCCTACTGAGGGCAGCTCC
AAG
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