mRNA_Ecto-sp13_S_contig9714.21350.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9714.21350.1
Unique NamemRNA_Ecto-sp13_S_contig9714.21350.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9714.21350.1 vs. uniprot
Match: D8LBI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI8_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 2.050e-86
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1 
Query:  100 MPPSPPQVLFFGEFRPKETGELDEVKFREAVVARIIHVVPAGEQPTQVALPPTFRGITQVEPFQLEVFCKNLNNLHSRYFDRLMPTATVPGGAVYTMPQDIVTNHLVIRGSFQAMSVVICGTVVPRTALSPDAIQALTVSDKP 528
            MPPSPPQVLFFGEFRPKETGELDEVKFREAVVARIIHVVPAGEQPTQVALPPTFRGITQVEPFQLEVFCKNLNNLHS+YFDRLMPTATVPGGAVYTMPQDIVTNHLVIRGSFQAMSVVICGTVVPRTALSPDAIQALTVSDKP
Sbjct:    1 MPPSPPQVLFFGEFRPKETGELDEVKFREAVVARIIHVVPAGEQPTQVALPPTFRGITQVEPFQLEVFCKNLNNLHSKYFDRLMPTATVPGGAVYTMPQDIVTNHLVIRGSFQAMSVVICGTVVPRTALSPDAIQALTVSDKP 143
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BLAST of mRNA_Ecto-sp13_S_contig9714.21350.1 vs. uniprot
Match: A0A6H5JNJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ9_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 1.170e-68
Identity = 119/124 (95.97%), Postives = 119/124 (95.97%), Query Frame = 1 
Query:  157 GELDEVKFREAVVARIIHVVPAGEQPTQVALPPTFRGITQVEPFQLEVFCKNLNNLHSRYFDRLMPTATVPGGAVYTMPQDIVTNHLVIRGSFQAMSVVICGTVVPRTALSPDAIQALTVSDKP 528
            G    VKFREAVVARIIHVVPAGEQPTQVALPPTFRGITQVEPFQLEVFCKNLNNLHSRYFDRLMPTATVPGGAVYTMPQDIVTNHLVIRGSFQAMSVVICGTVVPRTALSP AIQALTVSDKP
Sbjct:   16 GTPTAVKFREAVVARIIHVVPAGEQPTQVALPPTFRGITQVEPFQLEVFCKNLNNLHSRYFDRLMPTATVPGGAVYTMPQDIVTNHLVIRGSFQAMSVVICGTVVPRTALSPGAIQALTVSDKP 139
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BLAST of mRNA_Ecto-sp13_S_contig9714.21350.1 vs. uniprot
Match: A0A7S4DEG1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEG1_HETAK)

HSP 1 Score: 108 bits (271), Expect = 3.980e-26
Identity = 55/131 (41.98%), Postives = 81/131 (61.83%), Query Frame = 1 
Query:  121 VLFFGEFRPKETG-ELDEVKFREAVVARIIHVVPAGEQPTQVALPPTFRGITQVEPFQLEVFCKNLNNLHSRYFDRLMPTATVPGGAVYTMPQDIVTNHLVIRGSFQAMSVVICGTVVPRTALSPDAIQAL 510
            +LF G+F+ K+   ++DE+ FREAVV +   +VPAG  P    LP  F+ +TQ E F LEVF K+L++     FDRL P     GG  +    + +TNHL++RGS+ A+S+ + G V+PR  LSP+ +  L
Sbjct:    7 ILFVGDFQHKDLEIDIDEITFREAVVVKGFQIVPAGTNPHPETLP-NFKSVTQSEKFNLEVFAKDLSSPGKTSFDRLTPRFEGQGGVTFNTQDEQITNHLILRGSYTALSICLYGNVIPRPQLSPEVLATL 136
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BLAST of mRNA_Ecto-sp13_S_contig9714.21350.1 vs. uniprot
Match: A0A1Y1IHP4_KLENI (VIR_N domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IHP4_KLENI)

HSP 1 Score: 65.1 bits (157), Expect = 4.710e-9
Identity = 41/125 (32.80%), Postives = 65/125 (52.00%), Query Frame = 1 
Query:  118 QVLFFGEFRPKETGE-LDEVKFREAVVARIIHVVPAGEQPTQVALPPTFRGITQVEPFQLEVFCKNLNNLHSRYFDRLMPTAT--VPGGAVYTMPQDIVTNHLVIRGSFQAMSVVICGTVVPRTA 483
            +VL+   F  +   + +DEV F++ V+    H+VP    P    L   F  +T   PF L+VF  N  + ++ +F +L P  +    GG     PQ +VT HLV RG++Q +S++I G  +P  A
Sbjct:    2 EVLYCDSFLHEAAADHVDEVLFKKPVIVSACHIVPKDGNPEPELL--EFFSLTSPPPFNLQVFYHN-GDQNASHFQKLGPQISWVADGGKESIDPQPVVTRHLVFRGNYQNLSLIIYGATIPDEA 123
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BLAST of mRNA_Ecto-sp13_S_contig9714.21350.1 vs. uniprot
Match: A0A388KCM5_CHABU (VIR_N domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KCM5_CHABU)

HSP 1 Score: 59.7 bits (143), Expect = 3.460e-7
Identity = 39/118 (33.05%), Postives = 63/118 (53.39%), Query Frame = 1 
Query:  148 KETGELDEVKFREAVVARIIHVVPAGEQPTQVALPPTFRGITQVEPFQLEVFCKNLNNLHSRYFDRLMPTATVPGGAVYTMPQDI-VTNHLVIRGSFQAMSVVICGT-VVPRTALSPD 495
            + T  +DEV+F   V+     +V   E P    L   F+GIT    F L++F +NL     R F+RL        G   T+  ++ +T+HLV+RG++Q++S++I G+    +T L PD
Sbjct:   57 RATDNIDEVRFDHPVIISACSIVDQNENPHPDLLQ-DFKGITTPPTFTLDIFVRNLIKPSDR-FERLSQRLVYAHGTQETLGVEVTITDHLVLRGTYQSVSLIIYGSRAEEKTGLLPD 172
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9714.21350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LBI8_ECTSI2.050e-8699.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNJ9_9PHAE1.170e-6895.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4DEG1_HETAK3.980e-2641.98Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1Y1IHP4_KLENI4.710e-932.80VIR_N domain-containing protein n=1 Tax=Klebsormid... [more]
A0A388KCM5_CHABU3.460e-733.05VIR_N domain-containing protein n=1 Tax=Chara brau... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9714contigEcto-sp13_S_contig9714:2689..5265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size530
Hectar predicted targeting categoryother localisation
Exons4
Cds size528
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464234.9324708-CDS-Ecto-sp13_S_contig9714:2688..28591681464234.9324708-CDS-Ecto-sp13_S_contig9714:2688..2859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9714 2689..2859 +
1681464234.9586117-CDS-Ecto-sp13_S_contig9714:4344..44701681464234.9586117-CDS-Ecto-sp13_S_contig9714:4344..4470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9714 4345..4470 +
1681464234.9680574-CDS-Ecto-sp13_S_contig9714:4735..48761681464234.9680574-CDS-Ecto-sp13_S_contig9714:4735..4876Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9714 4736..4876 +
1681464234.9775982-CDS-Ecto-sp13_S_contig9714:5175..52651681464234.9775982-CDS-Ecto-sp13_S_contig9714:5175..5265Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9714 5176..5265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9714.21350.1prot_Ecto-sp13_S_contig9714.21350.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9714 2689..5265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9714.21350.1

>prot_Ecto-sp13_S_contig9714.21350.1 ID=prot_Ecto-sp13_S_contig9714.21350.1|Name=mRNA_Ecto-sp13_S_contig9714.21350.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
MCHRTRHRPGTTAAAGTWCPHTVAKIMQHPPHLMPPSPPQVLFFGEFRPK
ETGELDEVKFREAVVARIIHVVPAGEQPTQVALPPTFRGITQVEPFQLEV
FCKNLNNLHSRYFDRLMPTATVPGGAVYTMPQDIVTNHLVIRGSFQAMSV
VICGTVVPRTALSPDAIQALTVSDKP
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mRNA from alignment at Ecto-sp13_S_contig9714:2689..5265+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9714.21350.1 ID=mRNA_Ecto-sp13_S_contig9714.21350.1|Name=mRNA_Ecto-sp13_S_contig9714.21350.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2577bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9714:2689..5265+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCACCGCACCAGACACAGGCCTGGTACAACAGCAGCAGCAGGGAC
TTGGTGCCCGCATACGGTGGCCAAGATCATGCAGCACCCACCGCATCTCA
TGCCGCCGTCTCCTCCGCAAGTGCTGTTCTTTGGCGAGTTCCGGCCAAAA
GAAACCGGAGAACTAGACGAGGTGCGATATCGATAAGTGTAGCGTAAGAT
CGCACGGTCCGACGCAGCGAGAGAGCACCAGAGAGACGGACGTAATGATG
CTCGTAGGTGCATCCCTGGCGGTCTTCTTCCGTAGACGCGCTGATTCGTA
CCTTGGCATGTGTTGGCGATGACGGTTACATTTCTTCATCCCCCAGCATG
CCCCAAGAGTTGTTGGTGTGCAGTTTGCGACTGGGCGCTGCCTATGGGGA
GGGAAAGGACACTCATCAAACAGCGAGTGAGCGAGAGGGTCCACCGCTGC
ATTTCTCGGGCATTGCAGCCGCACGCTGTTCTGAAGGAAGGGATACATAG
CTGCTGGGGCATACTGCTGTGCAACTGCAGCGCAAAACAGAGAGCACCAT
AGTTTGTACAAGCAGTTTGGCATGTGTGGCGCGTAAGGTTGGTCTGCATC
CTCGCCAGCGTCGTTGCCTCACGTTGGCCTGTGCTTCTTATCGCAAGCCG
GACCTCAAACATCATCAGTGCGTGATATGTTATGTGAGATTTACGACAGG
CCGGTCAGCATTTTGAAGCAAAGATATAGCCGTAGAGACTACCGAGCGTC
TTCGAGGCCAAGAGAGACACCTTAGAAGAGAGAGAGAAAACGCATTTCGG
AAGATACCACACCCTCACAGGTTACCCCGCACACCATGACCGGACCACCC
TGCCCACGACTTTCATGACCACGAGTCATGAAGAAATAGACAACAACAGT
AGCATGGAGGAGGCAAAAACTAAATGTCCTTGCTGCAAGCACCTCTAACC
CGCAGACGAGGCCATTGGAGGCTGAATCGCAGCTTGTTTTCCTCTCCACG
ATCCTCTGCAACTGCAGAACGACAGAAGGAGGCTCTCTGTGCTATCTCCG
GGACGCGTTATTCCCGCCAACTTGTTCCACGAGGGAACCAGCTGTCTTTC
GCTACAGATGCTTTCAGATACAGCTCAATTTTTTTTAAACCACACTTTCG
ATTTTTCGCATCTCCTTTCTAGCATACTCATTATGTCTTCACTATGACAC
CCTACCGAGCTCCAGTCGCACGAGATACCGCACACCCCACAGCATGCCAA
CACGGGGTGTAGCACACTCAAAGCAGCCAGCTGCTGCTATGACAATGTTT
CCTCTCGCAATAGTTTTTGCGGGAAACCGAACGCGCCGCTACCGTCTCTA
CTGCTGTGGCACCATTCCTCAAACATCTCGTGCAGCACTGCTGCTTCGAT
CCCGGCAGGTGTATAGATGCCGTCGGTTGCATCTCTCGTTGATACTGTTT
TCACGCACGTTGCTGATGCTGGATAGAGCAGAGTGCGACACAACAAGCGT
GCTGACGCCGGGCACGCCTACGGCGGTCTGCCTGTCTTCCTTTCGACCTT
CCCGGCCACGCCCTCAACAACCAAAACCTTGTTGTCCCTCGTCGTCTTTT
CCTAATTTTTATACCATCACCTAACCCGCCCCTCCACCCACACTCTGTCG
ACCCAGGTGAAGTTCCGAGAAGCCGTGGTAGCGAGAATCATTCACGTCGT
GCCGGCGGGAGAGCAGCCCACACAGGTTGCCCTCCCCCCGACCTTCCGAG
GGATCACGCAGGTCGAGCCCTTCCAACTGGAGGTGTGTATGCACGCGCAG
AACAAGAAAGGGGCCTGCGGCACGCGGCGGAACGGGTTGTCTTTTTTTCG
GGCCAGCGTCGGCTTACATGTTGTCGAAAGGAGGAGCTTGGGCTTTCACT
CGTGTTGGTTATACCTTAGGAGAGGGCCATGTACCGTAGTTACCGAGAGC
GCTTCAGTGGTTTCGGCGTGCTCGACATTTGCCCCGACAAACGTGTGTAT
GTAGTTGCGCGACTGCTGACGTTATTTTTTGCTCTGTGTGCGCGCAGGTG
TTCTGCAAGAACCTCAACAACCTGCACTCGAGATATTTCGACCGCCTCAT
GCCCACGGCAACGGTGCCGGGAGGCGCGGTGTACACCATGCCGCAGGACA
TCGTCACCAACCACCTCGTCATTCGGGGTTCCTTTCAGGTATGCTGTGCA
CGTTTTCTCGCCTAAAGTTGTTGTCGTAGCTCCGGGTAGGGAGCGATGCC
ACGATTTGATTGACCAGTTTCTCGATTGCCGGTCGCGGTGGAGCTGTCGT
TGTCACACAACCTAGCCAGATTCTCGCTGTACACCTTGGCACATTCCAAG
AAGAACCTTCGAACACGGACCCGGACAACTTTTGCCCGAGCTCACCTCAT
TTACCACCGCTTCTTTGTTGTGTGTAATGCGTGCGCTTTTCCCATCCCAA
CGGCGCTTTTCCTATAATCGAAACCTCTTTGTGCCAGGCGATGTCGGTCG
TCATTTGCGGCACGGTGGTTCCGCGGACGGCGCTGTCGCCGGACGCTATC
CAGGCGCTGACGGTGTCGGACAAGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9714:2689..5265+

>mRNA_Ecto-sp13_S_contig9714.21350.1 ID=mRNA_Ecto-sp13_S_contig9714.21350.1|Name=mRNA_Ecto-sp13_S_contig9714.21350.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9714:2689..5265+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCACCGCACCAGACACAGGCCTGGTACAACAGCAGCAGCAGGGAC
TTGGTGCCCGCATACGGTGGCCAAGATCATGCAGCACCCACCGCATCTCA
TGCCGCCGTCTCCTCCGCAAGTGCTGTTCTTTGGCGAGTTCCGGCCAAAA
GAAACCGGAGAACTAGACGAGGTGAAGTTCCGAGAAGCCGTGGTAGCGAG
AATCATTCACGTCGTGCCGGCGGGAGAGCAGCCCACACAGGTTGCCCTCC
CCCCGACCTTCCGAGGGATCACGCAGGTCGAGCCCTTCCAACTGGAGGTG
TTCTGCAAGAACCTCAACAACCTGCACTCGAGATATTTCGACCGCCTCAT
GCCCACGGCAACGGTGCCGGGAGGCGCGGTGTACACCATGCCGCAGGACA
TCGTCACCAACCACCTCGTCATTCGGGGTTCCTTTCAGGCGATGTCGGTC
GTCATTTGCGGCACGGTGGTTCCGCGGACGGCGCTGTCGCCGGACGCTAT
CCAGGCGCTGACGGTGTCGGACAAGCCG
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