mRNA_Ecto-sp13_S_contig97102.21347.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig97102.21347.1
Unique NamemRNA_Ecto-sp13_S_contig97102.21347.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig97102.21347.1 vs. uniprot
Match: A0A6H5L2L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L8_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.550e-58
Identity = 110/123 (89.43%), Postives = 112/123 (91.06%), Query Frame = -3 
Query:   64 PLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLVIPATAGGAGRAKATASMEVIPSRVRGGFAPSCSSTRQIRTGGFGLPTPPSRTPKTNNKRGSSFESPLPPAAXXXXXXXXARPHALS 432
            PLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLV+PATAG AGRAKAT SM VIPSRVRGGFAPSCSSTRQIRTGGF LP+PPSRTPK NNKRGSSFESPLPPAA   XXX   RPHALS
Sbjct:  309 PLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLVVPATAGSAGRAKATGSMGVIPSRVRGGFAPSCSSTRQIRTGGFALPSPPSRTPKANNKRGSSFESPLPPAAATAXXX---RPHALS 428
[Close]
BLAST of mRNA_Ecto-sp13_S_contig97102.21347.1 vs. uniprot
Match: D7FJS7_ECTSI (MAP kinase phosphatase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS7_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 5.970e-33
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = -3 
Query:  202 PLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLVIPATAGGAG--RAKATASMEVIPSRVRGGFAPSCSSTRQIRT 432
            PLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLV+PATAG     RAKAT SM VIPSR+RGGFAPSCSST ++ T
Sbjct:  189 PLFPNDLVLKICIHESDRTNVKATLAALDSRGCYLLVVPATAGXXXXXRAKATVSMGVIPSRIRGGFAPSCSSTSRLST 267
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig97102.21347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2L8_9PHAE1.550e-5889.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJS7_ECTSI5.970e-3383.54MAP kinase phosphatase 1 n=1 Tax=Ectocarpus silicu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig97102contigEcto-sp13_S_contig97102:90..523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size436
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464234.7835772-CDS-Ecto-sp13_S_contig97102:89..4491681464234.7835772-CDS-Ecto-sp13_S_contig97102:89..449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig97102 90..449 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464234.7971582-UTR-Ecto-sp13_S_contig97102:449..5231681464234.7971582-UTR-Ecto-sp13_S_contig97102:449..523Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig97102 450..523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig97102.21347.1prot_Ecto-sp13_S_contig97102.21347.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig97102 90..449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig97102.21347.1

>prot_Ecto-sp13_S_contig97102.21347.1 ID=prot_Ecto-sp13_S_contig97102.21347.1|Name=mRNA_Ecto-sp13_S_contig97102.21347.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
RPRRRGGRGRQAAEGDGPGGEGQRVRPRSGSGGSGSGSWRQRRLEATAAL
VVGLRGARGRGGQPEPPGSYLPSRGTGRGEASSYSGRDHFHAGCRLGPSR
TAGGGRDDEKVAAAGVESR*
back to top

mRNA from alignment at Ecto-sp13_S_contig97102:90..523+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig97102.21347.1 ID=mRNA_Ecto-sp13_S_contig97102.21347.1|Name=mRNA_Ecto-sp13_S_contig97102.21347.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=434bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97102:90..523+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCCTCGCCGCCGCGGGGGACGGGGTCGACAGGCGGCCGAGGGAGACGG
ACCGGGTGGCGAGGGACAGCGCGTGCGGCCGCGCAGCGGCAGCGGCGGCA
GCGGTAGCGGCAGCTGGCGGCAACGGAGACTCGAAGCTACTGCCGCGCTT
GTTGTTGGTCTTCGGGGTGCGCGAGGGCGGGGTGGGCAACCCGAACCCCC
CGGTTCGTATCTGCCTAGTCGAGGAACAGGACGGGGCGAAGCCTCCTCGT
ACTCTGGACGGGATCACTTCCATGCTGGCTGTCGCCTTGGCCCTTCCCGC
ACCGCCGGCGGTGGCCGGGATGACGAGAAGGTAGCAGCCGCGGGAGTCGA
GAGCCGCTAGGGTGGCTTTGACGTTCGTTCGGTCGCTCTCGTGGATGCAG
ATCTTGAGGACAAGGTCGTTCGGGAAGAGGGGTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig97102:90..523+

>mRNA_Ecto-sp13_S_contig97102.21347.1 ID=mRNA_Ecto-sp13_S_contig97102.21347.1|Name=mRNA_Ecto-sp13_S_contig97102.21347.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig97102:90..523+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCCTCGCCGCCGCGGGGGACGGGGTCGACAGGCGGCCGAGGGAGACGG
ACCGGGTGGCGAGGGACAGCGCGTGCGGCCGCGCAGCGGCAGCGGCGGCA
GCGGTAGCGGCAGCTGGCGGCAACGGAGACTCGAAGCTACTGCCGCGCTT
GTTGTTGGTCTTCGGGGTGCGCGAGGGCGGGGTGGGCAACCCGAACCCCC
CGGTTCGTATCTGCCTAGTCGAGGAACAGGACGGGGCGAAGCCTCCTCGT
ACTCTGGACGGGATCACTTCCATGCTGGCTGTCGCCTTGGCCCTTCCCGC
ACCGCCGGCGGTGGCCGGGATGACGAGAAGGTAGCAGCCGCGGGAGTCGA
GAGCCGCTAG
back to top