mRNA_Ecto-sp13_S_contig9709.21345.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9709.21345.1
Unique NamemRNA_Ecto-sp13_S_contig9709.21345.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9709.21345.1 vs. uniprot
Match: D8LB63_ECTSI (Putative adhesion lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB63_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 6.000e-26
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 VFLPTDDAFEAEGITDTSITTLPQPAVQNLFLYHLLEGAASSDVIANATEFYTVL 165
            VFLPTDDAFEAEGITDTSITTLPQPAVQNLFLYHLLEGAASS+V+ANAT+FYTVL
Sbjct:  244 VFLPTDDAFEAEGITDTSITTLPQPAVQNLFLYHLLEGAASSEVMANATDFYTVL 298
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9709.21345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB63_ECTSI6.000e-2694.55Putative adhesion lipoprotein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9709contigEcto-sp13_S_contig9709:217..381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score107.8
Seed ortholog evalue1.6e-21
Seed eggNOG ortholog2880.D8LB63
Model size165
KEGG koko:K19519
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.regulation of chemokine (C-C motif) ligand 2 secretion
EggNOG OGsCOG2335@1,KOG1437@2759
Cds size165
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464234.7116315-CDS-Ecto-sp13_S_contig9709:216..3811681464234.7116315-CDS-Ecto-sp13_S_contig9709:216..381Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9709 217..381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9709.21345.1prot_Ecto-sp13_S_contig9709.21345.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9709 217..381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9709.21345.1

>prot_Ecto-sp13_S_contig9709.21345.1 ID=prot_Ecto-sp13_S_contig9709.21345.1|Name=mRNA_Ecto-sp13_S_contig9709.21345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
VFLPTDDAFEAEGITDTSITTLPQPAVQNLFLYHLLEGAASSDVIANATE
FYTVL
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mRNA from alignment at Ecto-sp13_S_contig9709:217..381-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9709.21345.1 ID=mRNA_Ecto-sp13_S_contig9709.21345.1|Name=mRNA_Ecto-sp13_S_contig9709.21345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9709:217..381- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTTCCTGCCCACCGACGACGCCTTCGAGGCGGAGGGCATCACCGACAC
CTCCATCACCACGCTGCCGCAGCCGGCGGTGCAGAACCTCTTCCTCTACC
ACCTGCTGGAAGGAGCCGCGTCCTCGGACGTGATAGCTAATGCCACCGAG
TTCTACACGGTGCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9709:217..381-

>mRNA_Ecto-sp13_S_contig9709.21345.1 ID=mRNA_Ecto-sp13_S_contig9709.21345.1|Name=mRNA_Ecto-sp13_S_contig9709.21345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9709:217..381- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTTCCTGCCCACCGACGACGCCTTCGAGGCGGAGGGCATCACCGACAC
CTCCATCACCACGCTGCCGCAGCCGGCGGTGCAGAACCTCTTCCTCTACC
ACCTGCTGGAAGGAGCCGCGTCCTCGGACGTGATAGCTAATGCCACCGAG
TTCTACACGGTGCTC
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