mRNA_Ecto-sp13_S_contig9679.21312.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9679.21312.1
Unique NamemRNA_Ecto-sp13_S_contig9679.21312.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9679.21312.1 vs. uniprot
Match: A0A6H5K7A9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7A9_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.930e-31
Identity = 70/84 (83.33%), Postives = 71/84 (84.52%), Query Frame = 2 
Query:    5 PLIMSPGARTPRPVSAVSASALSVLSGMAAHSPATMTPLRPPPEAAGTEXXXXXXXXXXIAATDDVRAMAGRKETPVLVVVGGS 256
            PLIMSPGARTPRPVSAVSASALSVLSGMAAHSPATMTPL PPPEAAGTE           A TDDVRAMAGRKETPVLV+VGGS
Sbjct:  701 PLIMSPGARTPRPVSAVSASALSVLSGMAAHSPATMTPLLPPPEAAGTEPTSTSASASATAVTDDVRAMAGRKETPVLVIVGGS 784
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9679.21312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7A9_9PHAE3.930e-3183.33Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9679contigEcto-sp13_S_contig9679:4370..4710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size341
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464231.5559318-CDS-Ecto-sp13_S_contig9679:4369..47081681464231.5559318-CDS-Ecto-sp13_S_contig9679:4369..4708Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9679 4370..4708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9679.21312.1prot_Ecto-sp13_S_contig9679.21312.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9679 4370..4708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9679.21312.1

>prot_Ecto-sp13_S_contig9679.21312.1 ID=prot_Ecto-sp13_S_contig9679.21312.1|Name=mRNA_Ecto-sp13_S_contig9679.21312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
AAADHVPRRADAQAGVGGVGVGALGAVRHGGAFPRDDDAAAATTGGGRNG
DDVDIGIGIGNSGDGRRARDGGEEGNSGVGGRRGELRQRSARQQRWRRRW
GGWVVEGLGPAET
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mRNA from alignment at Ecto-sp13_S_contig9679:4370..4710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9679.21312.1 ID=mRNA_Ecto-sp13_S_contig9679.21312.1|Name=mRNA_Ecto-sp13_S_contig9679.21312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=341bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9679:4370..4710+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCCGCTGATCATGTCCCCCGGCGCGCGGACGCCCAGGCCGGTGTCGG
CGGTGTCGGCGTCGGCGCTCTCGGTGCTGTCCGGCATGGCGGCGCATTCC
CCCGCGACGATGACGCCGCTGCGGCCACCACCGGAGGCGGCAGGAACGGA
GACGACGTCGACATCGGCATCGGCATCGGCAATAGCGGCGACGGACGACG
TGCGCGCGATGGCGGGGAGGAAGGAAACTCCGGTGTTGGTGGTCGTCGGG
GGGAGCTGCGGCAACGATCAGCGAGGCAGCAGCGGTGGCGCCGCCGGTGG
GGTGGGTGGGTGGTGGAAGGGCTGGGGCCAGCGGAGACGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9679:4370..4710+

>mRNA_Ecto-sp13_S_contig9679.21312.1 ID=mRNA_Ecto-sp13_S_contig9679.21312.1|Name=mRNA_Ecto-sp13_S_contig9679.21312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9679:4370..4710+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCCGCTGATCATGTCCCCCGGCGCGCGGACGCCCAGGCCGGTGTCGG
CGGTGTCGGCGTCGGCGCTCTCGGTGCTGTCCGGCATGGCGGCGCATTCC
CCCGCGACGATGACGCCGCTGCGGCCACCACCGGAGGCGGCAGGAACGGA
GACGACGTCGACATCGGCATCGGCATCGGCAATAGCGGCGACGGACGACG
TGCGCGCGATGGCGGGGAGGAAGGAAACTCCGGTGTTGGTGGTCGTCGGG
GGGAGCTGCGGCAACGATCAGCGAGGCAGCAGCGGTGGCGCCGCCGGTGG
GGTGGGTGGGTGGTGGAAGGGCTGGGGCCAGCGGAGACG
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