mRNA_Ecto-sp13_S_contig9672.21303.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9672.21303.1
Unique NamemRNA_Ecto-sp13_S_contig9672.21303.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9672.21303.1 vs. uniprot
Match: A0A6H5JKG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG2_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.720e-39
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:   19 SPQSNKTACDASLAVKPCRHLLLDGECRRSDCTFSHDFATTPCRYWLQGCCVNSSDDCYFMHDLIVPDE 225
            SP+S +TACDASLAVKPCRHLLLDGECRRSDC FSHDFATTPCRYWLQGCCVNSSDDCYFMHDL+VP+E
Sbjct:  155 SPESLQTACDASLAVKPCRHLLLDGECRRSDCAFSHDFATTPCRYWLQGCCVNSSDDCYFMHDLVVPNE 223
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BLAST of mRNA_Ecto-sp13_S_contig9672.21303.1 vs. uniprot
Match: D7FNC2_ECTSI (C3H1-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNC2_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 5.330e-39
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:   40 ACDASLAVKPCRHLLLDGECRRSDCTFSHDFATTPCRYWLQGCCVNSSDDCYFMHDLIVPDEA 228
            ACDASLAVKPCRHLLLDGECRRSDCTFSHDFATTPCRYWLQGCCVNSSDDCYFMHDL+VPDEA
Sbjct:  184 ACDASLAVKPCRHLLLDGECRRSDCTFSHDFATTPCRYWLQGCCVNSSDDCYFMHDLVVPDEA 246
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BLAST of mRNA_Ecto-sp13_S_contig9672.21303.1 vs. uniprot
Match: A0A0J0XZ44_9TREE (Uncharacterized protein n=1 Tax=Cutaneotrichosporon oleaginosum TaxID=879819 RepID=A0A0J0XZ44_9TREE)

HSP 1 Score: 57.8 bits (138), Expect = 5.860e-8
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:   61 VKPCRHLLLDGECRRSDCTFSHDFATTPCRYWLQGCCVNSSDDCYFMHDL 210
             + CR+ L +GECRRSDC FSHD     CR+WL+G C    + C FMH+L
Sbjct:  518 TRMCRYFL-NGECRRSDCRFSHDLDRALCRFWLRGHCAKGPN-CEFMHNL 565
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BLAST of mRNA_Ecto-sp13_S_contig9672.21303.1 vs. uniprot
Match: J5RBK2_TRIAS (Uncharacterized protein n=2 Tax=Trichosporon asahii var. asahii TaxID=189963 RepID=J5RBK2_TRIAS)

HSP 1 Score: 57.0 bits (136), Expect = 1.090e-7
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   61 VKPCRHLLLDGECRRSDCTFSHDFATTPCRYWLQGCCVNSSDDCYFMHDL 210
             + CR+ L +GECRRSDC FSHD     CR+WL+G C      C FMH+L
Sbjct:  538 TRMCRYFL-NGECRRSDCRFSHDLDRALCRFWLRGHCAKGLS-CEFMHNL 585
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BLAST of mRNA_Ecto-sp13_S_contig9672.21303.1 vs. uniprot
Match: A0A1B9GCG1_9TREE (Uncharacterized protein n=1 Tax=Kwoniella bestiolae CBS 10118 TaxID=1296100 RepID=A0A1B9GCG1_9TREE)

HSP 1 Score: 57.0 bits (136), Expect = 1.100e-7
Identity = 27/51 (52.94%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   58 AVKPCRHLLLDGECRRSDCTFSHDFATTPCRYWLQGCCVNSSDDCYFMHDL 210
            A K CR+ L  GECRRSDC FSHD     CR+WL+G C    + C F+H L
Sbjct:  586 AGKMCRYFLA-GECRRSDCRFSHDIDRALCRFWLRGHCAKGPN-CEFLHQL 634
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BLAST of mRNA_Ecto-sp13_S_contig9672.21303.1 vs. uniprot
Match: A0A1B9ILJ4_9TREE (Uncharacterized protein n=2 Tax=Kwoniella mangrovensis TaxID=463800 RepID=A0A1B9ILJ4_9TREE)

HSP 1 Score: 57.0 bits (136), Expect = 1.100e-7
Identity = 27/51 (52.94%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   58 AVKPCRHLLLDGECRRSDCTFSHDFATTPCRYWLQGCCVNSSDDCYFMHDL 210
            A K CR+ L  GECRRSDC FSHD     CR+WL+G C    + C F+H L
Sbjct:  599 AGKMCRYFLA-GECRRSDCRFSHDIDRALCRFWLRGHCAKGPN-CEFLHQL 647
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BLAST of mRNA_Ecto-sp13_S_contig9672.21303.1 vs. uniprot
Match: A0A427Y6D7_9TREE (Uncharacterized protein n=1 Tax=Apiotrichum porosum TaxID=105984 RepID=A0A427Y6D7_9TREE)

HSP 1 Score: 57.0 bits (136), Expect = 1.100e-7
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:   61 VKPCRHLLLDGECRRSDCTFSHDFATTPCRYWLQGCCVNSSDDCYFMHDL 210
             + CR+ L +GECRRSDC FSHD     CR+WL+G C    + C F+H+L
Sbjct:  596 TRMCRYFL-NGECRRSDCRFSHDLERALCRFWLRGHCAKGPN-CEFLHNL 643
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BLAST of mRNA_Ecto-sp13_S_contig9672.21303.1 vs. uniprot
Match: A0A4V1M368_TREME (Uncharacterized protein n=2 Tax=Tremella mesenterica TaxID=5217 RepID=A0A4V1M368_TREME)

HSP 1 Score: 56.6 bits (135), Expect = 1.500e-7
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   61 VKPCRHLLLDGECRRSDCTFSHDFATTPCRYWLQGCCVNSSDDCYFMHDL 210
            V+ CR+ L  GECRRSDC FSHD     CR+WL+G C    + C F+H L
Sbjct:  555 VRMCRYYLT-GECRRSDCRFSHDLERALCRFWLRGHCAKGPN-CEFLHHL 602
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BLAST of mRNA_Ecto-sp13_S_contig9672.21303.1 vs. uniprot
Match: A0A1Y2AP02_9TREE (Uncharacterized protein n=1 Tax=Naematelia encephala TaxID=71784 RepID=A0A1Y2AP02_9TREE)

HSP 1 Score: 56.6 bits (135), Expect = 1.500e-7
Identity = 27/58 (46.55%), Postives = 33/58 (56.90%), Query Frame = 1 
Query:   37 TACDASLAVKPCRHLLLDGECRRSDCTFSHDFATTPCRYWLQGCCVNSSDDCYFMHDL 210
            T      A + CR+ L  GECRRSDC FSHD     CR+WL+G C    + C F+H L
Sbjct:  613 TRSPGGQATRMCRYYLA-GECRRSDCRFSHDLDRALCRFWLRGHCAKGPN-CEFLHHL 668
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BLAST of mRNA_Ecto-sp13_S_contig9672.21303.1 vs. uniprot
Match: UPI00190880D8 (uncharacterized protein n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI00190880D8)

HSP 1 Score: 56.2 bits (134), Expect = 2.040e-7
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   49 ASLAVKPCRHLLLDGECRRSDCTFSHDFATTPCRYWLQGCCVNSSDDCYFMHDL 210
            +S A + CR+ L  G+CRRSDC FSHD     CR+WL+G C    + C F+H L
Sbjct:  479 SSGASRVCRYFLA-GDCRRSDCRFSHDLDRALCRFWLKGQCAKG-EQCEFLHTL 530
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9672.21303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKG2_9PHAE1.720e-3991.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNC2_ECTSI5.330e-3998.41C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A0J0XZ44_9TREE5.860e-852.00Uncharacterized protein n=1 Tax=Cutaneotrichosporo... [more]
J5RBK2_TRIAS1.090e-752.00Uncharacterized protein n=2 Tax=Trichosporon asahi... [more]
A0A1B9GCG1_9TREE1.100e-752.94Uncharacterized protein n=1 Tax=Kwoniella bestiola... [more]
A0A1B9ILJ4_9TREE1.100e-752.94Uncharacterized protein n=2 Tax=Kwoniella mangrove... [more]
A0A427Y6D7_9TREE1.100e-750.00Uncharacterized protein n=1 Tax=Apiotrichum porosu... [more]
A0A4V1M368_TREME1.500e-752.00Uncharacterized protein n=2 Tax=Tremella mesenteri... [more]
A0A1Y2AP02_9TREE1.500e-746.55Uncharacterized protein n=1 Tax=Naematelia encepha... [more]
UPI00190880D82.040e-748.15uncharacterized protein n=1 Tax=Cantharellus anzut... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9672contigEcto-sp13_S_contig9672:5989..6216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score145.6
Seed ortholog evalue9.5e-33
Seed eggNOG ortholog2880.D7FNC2
Model size228
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
EggNOG OGsKOG2401@1,KOG2401@2759
Cds size228
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464230.9471486-CDS-Ecto-sp13_S_contig9672:5988..62161681464230.9471486-CDS-Ecto-sp13_S_contig9672:5988..6216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9672 5989..6216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9672.21303.1prot_Ecto-sp13_S_contig9672.21303.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9672 5989..6216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9672.21303.1

>prot_Ecto-sp13_S_contig9672.21303.1 ID=prot_Ecto-sp13_S_contig9672.21303.1|Name=mRNA_Ecto-sp13_S_contig9672.21303.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
RRRQPRSPQSNKTACDASLAVKPCRHLLLDGECRRSDCTFSHDFATTPCR
YWLQGCCVNSSDDCYFMHDLIVPDEA
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mRNA from alignment at Ecto-sp13_S_contig9672:5989..6216+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9672.21303.1 ID=mRNA_Ecto-sp13_S_contig9672.21303.1|Name=mRNA_Ecto-sp13_S_contig9672.21303.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9672:5989..6216+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGACGACAACCCCGATCTCCACAATCGAACAAGACCGCTTGCGACGC
CTCCCTCGCCGTCAAGCCCTGCCGACACCTCCTACTGGATGGAGAGTGTC
GCAGGAGCGACTGCACCTTCAGCCACGACTTCGCCACCACCCCCTGCCGC
TACTGGCTTCAGGGATGCTGTGTCAACTCCTCGGACGATTGTTACTTCAT
GCACGACTTGATCGTTCCCGACGAAGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9672:5989..6216+

>mRNA_Ecto-sp13_S_contig9672.21303.1 ID=mRNA_Ecto-sp13_S_contig9672.21303.1|Name=mRNA_Ecto-sp13_S_contig9672.21303.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9672:5989..6216+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGACGACAACCCCGATCTCCACAATCGAACAAGACCGCTTGCGACGC
CTCCCTCGCCGTCAAGCCCTGCCGACACCTCCTACTGGATGGAGAGTGTC
GCAGGAGCGACTGCACCTTCAGCCACGACTTCGCCACCACCCCCTGCCGC
TACTGGCTTCAGGGATGCTGTGTCAACTCCTCGGACGATTGTTACTTCAT
GCACGACTTGATCGTTCCCGACGAAGCG
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