mRNA_Ecto-sp13_S_contig9661.21292.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9661.21292.1
Unique NamemRNA_Ecto-sp13_S_contig9661.21292.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9661.21292.1 vs. uniprot
Match: D8LDR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR1_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 8.160e-90
Identity = 155/182 (85.16%), Postives = 161/182 (88.46%), Query Frame = 1 
Query:    1 MPLKRPMLHPKSINSSSRRGGGXXXXXTSPGARVRAQRDHRTRLFESIRGNREKIGRAMNSLRDAMRSGDEELVERLKAFIMHLRKRDPQFATQDAMNEALEQGLFSTAAKLKLKLEDINQNPFRHSLLDVSAEEXXXXXXXXXXXXDGGDTSEDMSWGFDQTFFGEEGDNIDDDPDDYDDI 546
            MPLKRPMLHP     + RRG G     T P ARVR +RD RTRLFESIRGNREKIGRAMNSLRDAMR+GDEEL ERLKAFIMHLRKRDPQFATQDAM+EALEQGLFSTAAKLKLKLE+INQNPFRHSLLDVSAE+ XXXXXXXX   DGGDTSEDMSWGFDQTFFGEEGDNIDDDPDDYDDI
Sbjct:    1 MPLKRPMLHP-----NGRRGDGSSGGGTCPRARVRVERDRRTRLFESIRGNREKIGRAMNSLRDAMRTGDEELAERLKAFIMHLRKRDPQFATQDAMDEALEQGLFSTAAKLKLKLEEINQNPFRHSLLDVSAEDGXXXXXXXX---DGGDTSEDMSWGFDQTFFGEEGDNIDDDPDDYDDI 174
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BLAST of mRNA_Ecto-sp13_S_contig9661.21292.1 vs. uniprot
Match: A0A6H5L051_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L051_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 8.030e-82
Identity = 146/155 (94.19%), Postives = 150/155 (96.77%), Query Frame = 1 
Query:   82 TSPGARVRAQRDHRTRLFESIRGNREKIGRAMNSLRDAMRSGDEELVERLKAFIMHLRKRDPQFATQDAMNEALEQGLFSTAAKLKLKLEDINQNPFRHSLLDVSAEEXXXXXXXXXXXXDGGDTSEDMSWGFDQTFFGEEGDNIDDDPDDYDDI 546
            +SPGARVR QRD RTRLFESIRGNREKIGRAMNSLRDAMRSGDEELVERLKAFIMHLRKRDPQFATQDAM+EALEQGLFSTAAKLKLKLEDI QNPFRHSLLDVS E+ XXXXXXXXXXXDGGDTSEDMSWGFDQTFFGEEGDNIDDDPDDYD+I
Sbjct:   68 SSPGARVRVQRDRRTRLFESIRGNREKIGRAMNSLRDAMRSGDEELVERLKAFIMHLRKRDPQFATQDAMDEALEQGLFSTAAKLKLKLEDIKQNPFRHSLLDVS-EDGXXXXXXXXXXXDGGDTSEDMSWGFDQTFFGEEGDNIDDDPDDYDNI 221
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9661.21292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDR1_ECTSI8.160e-9085.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L051_9PHAE8.030e-8294.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9661contigEcto-sp13_S_contig9661:685..1900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size549
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_001650.1
Cds size549
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464230.1611612-CDS-Ecto-sp13_S_contig9661:684..9001681464230.1611612-CDS-Ecto-sp13_S_contig9661:684..900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9661 685..900 -
1681464230.180512-CDS-Ecto-sp13_S_contig9661:1305..14401681464230.180512-CDS-Ecto-sp13_S_contig9661:1305..1440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9661 1306..1440 -
1681464230.1916704-CDS-Ecto-sp13_S_contig9661:1702..19001681464230.1916704-CDS-Ecto-sp13_S_contig9661:1702..1900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9661 1703..1900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9661.21292.1prot_Ecto-sp13_S_contig9661.21292.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9661 685..1900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9661.21292.1

>prot_Ecto-sp13_S_contig9661.21292.1 ID=prot_Ecto-sp13_S_contig9661.21292.1|Name=mRNA_Ecto-sp13_S_contig9661.21292.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
MPLKRPMLHPKSINSSSRRGGGRSGGGTSPGARVRAQRDHRTRLFESIRG
NREKIGRAMNSLRDAMRSGDEELVERLKAFIMHLRKRDPQFATQDAMNEA
LEQGLFSTAAKLKLKLEDINQNPFRHSLLDVSAEEDGGGGGGGGSNSDGG
DTSEDMSWGFDQTFFGEEGDNIDDDPDDYDDI*
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mRNA from alignment at Ecto-sp13_S_contig9661:685..1900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9661.21292.1 ID=mRNA_Ecto-sp13_S_contig9661.21292.1|Name=mRNA_Ecto-sp13_S_contig9661.21292.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9661:685..1900- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCTTGAAACGACCGATGCTCCACCCAAAATCCATCAACAGCAGCAG
CAGACGGGGCGGGGGAAGAAGCGGCGGGGGTACCAGCCCAGGGGCACGGG
TGAGGGCCCAGCGTGACCACCGCACGCGGCTGTTCGAGAGCATCCGCGGC
AACCGGGAGAAGATCGGGCGAGCGATGAACAGTCTCCGCGATGCGATGGT
GAGAGGAGCCAGACGGCCAGCACCGTTTTCTCGCGCGCCTCTGCGGAGCC
TGTTGGGCTGGTGCTACACTACTGTAGATACGGATCTGCGGAGAGATTCA
TCGTGCAGCTCCTATAATTTTCCGGTGGGTCTCCGGCCTGCACAAATTAC
CTGGTGTGGTTACGCCGGACGCCCCCTAACACAATCGTCCGCTACTATTA
TTGTTTTTGCTGTTTTTTTGTCCGGGACTGGTGTGTGCGGTGGCGGGGGG
GCGAAAGTAGAGGTCGGGCGATGAGGAGCTAGTCGAGAGACTGAAGGCCT
TCATCATGCACCTCCGGAAACGCGACCCCCAATTCGCTACGCAGGACGCG
ATGAACGAAGCCCTGGAACAGGGCCTGTTCTCCACGGCCGCCAAGGTATG
TTTATGGGATGTTTTTTTGTTTTTGTCATTGGCCGCGCAATCTTGTTCAC
CAATGAAAGCGCGTCATATTTCGTCGACCTCGTGATAGAAATCATCGGCC
GCGCAATCTTGTTCACCAATGAAAGCGCGTCATGTTTTGTCGACCTCGTG
ATGGAAATCATCGGCCGCGCAATCTTGTTGACCATTGAAAACGCGTCATA
TAGCGTCGACCTCGTGATAGCGGGCGCTTCCTTTGGGCAATCTACAAGTA
GTTCGTAGTCGCAGAACGTTGTTCTGCCCTTCAAAGCTGTGCTAGCTAAC
TCGCTGTCCGGCCTGTGGTGCCATCCCCGTTCTGCTGCCGTCCCGGTTCC
AAACACGGGGTCCGGTCTGTCTCTTGCGTGCTGCCGACCCAACCGCGAAG
CTCAAGCTCAAGCTAGAAGATATCAACCAGAACCCGTTCCGACATAGCCT
TTTGGACGTTTCGGCGGAGGAGGACGGCGGCGGCGGTGGCGGCGGCGGGA
GCAACAGCGATGGCGGGGACACATCGGAGGACATGAGCTGGGGTTTCGAC
CAGACATTCTTCGGGGAGGAGGGAGACAACATCGACGACGACCCAGACGA
CTACGACGACATATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9661:685..1900-

>mRNA_Ecto-sp13_S_contig9661.21292.1 ID=mRNA_Ecto-sp13_S_contig9661.21292.1|Name=mRNA_Ecto-sp13_S_contig9661.21292.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9661:685..1900- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCTTGAAACGACCGATGCTCCACCCAAAATCCATCAACAGCAGCAG
CAGACGGGGCGGGGGAAGAAGCGGCGGGGGTACCAGCCCAGGGGCACGGG
TGAGGGCCCAGCGTGACCACCGCACGCGGCTGTTCGAGAGCATCCGCGGC
AACCGGGAGAAGATCGGGCGAGCGATGAACAGTCTCCGCGATGCGATGAG
GTCGGGCGATGAGGAGCTAGTCGAGAGACTGAAGGCCTTCATCATGCACC
TCCGGAAACGCGACCCCCAATTCGCTACGCAGGACGCGATGAACGAAGCC
CTGGAACAGGGCCTGTTCTCCACGGCCGCCAAGCTCAAGCTCAAGCTAGA
AGATATCAACCAGAACCCGTTCCGACATAGCCTTTTGGACGTTTCGGCGG
AGGAGGACGGCGGCGGCGGTGGCGGCGGCGGGAGCAACAGCGATGGCGGG
GACACATCGGAGGACATGAGCTGGGGTTTCGACCAGACATTCTTCGGGGA
GGAGGGAGACAACATCGACGACGACCCAGACGACTACGACGACATATGA
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