mRNA_Ecto-sp13_S_contig96608.21291.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig96608.21291.1
Unique NamemRNA_Ecto-sp13_S_contig96608.21291.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig96608.21291.1 vs. uniprot
Match: D8LQJ8_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ8_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 3.940e-24
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 WDSVNTSDSQLVRSLAPDARLVYMQGKPKRGGMISSRDFCYVSHK 135
            WDSVNTSDSQLVRSLAPDARLVYMQGKPKRGGMISSRDFCYVSHK
Sbjct:  104 WDSVNTSDSQLVRSLAPDARLVYMQGKPKRGGMISSRDFCYVSHK 148
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BLAST of mRNA_Ecto-sp13_S_contig96608.21291.1 vs. uniprot
Match: A0A6H5KXE1_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXE1_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.760e-23
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 WDSVNTSDSQLVRSLAPDARLVYMQGKPKRGGMISSRDFCYVSHK 135
            WDSVNTSDSQLVRSLAPDARLVYMQGKPKRGGMISSRDFCYVSHK
Sbjct:  128 WDSVNTSDSQLVRSLAPDARLVYMQGKPKRGGMISSRDFCYVSHK 172
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BLAST of mRNA_Ecto-sp13_S_contig96608.21291.1 vs. uniprot
Match: A0A835YTY3_9STRA (START domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTY3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 7.670e-16
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 WDSVNTSDSQLVRSLAPDARLVYMQGKPKRGGMISSRDFCYVSHK 135
            WDSVNT D QLV++L  D RLVY+QGKPKRGG+ISSRDF YV H+
Sbjct:  125 WDSVNTQDCQLVKALGTDERLVYLQGKPKRGGVISSRDFAYVMHR 169
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig96608.21291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQJ8_ECTSI3.940e-24100.00START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KXE1_9PHAE1.760e-23100.00START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YTY3_9STRA7.670e-1673.33START domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig96608contigEcto-sp13_S_contig96608:362..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size138
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464230.1261117-CDS-Ecto-sp13_S_contig96608:361..4991681464230.1261117-CDS-Ecto-sp13_S_contig96608:361..499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig96608 362..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig96608.21291.1prot_Ecto-sp13_S_contig96608.21291.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig96608 362..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig96608.21291.1

>prot_Ecto-sp13_S_contig96608.21291.1 ID=prot_Ecto-sp13_S_contig96608.21291.1|Name=mRNA_Ecto-sp13_S_contig96608.21291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
WDSVNTSDSQLVRSLAPDARLVYMQGKPKRGGMISSRDFCYVSHK*
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mRNA from alignment at Ecto-sp13_S_contig96608:362..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig96608.21291.1 ID=mRNA_Ecto-sp13_S_contig96608.21291.1|Name=mRNA_Ecto-sp13_S_contig96608.21291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96608:362..499- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGGACTCAGTCAACACGTCAGACTCGCAACTGGTGCGCTCATTGGCCCC
TGACGCCAGGCTGGTGTATATGCAGGGAAAGCCGAAGAGGGGGGGCATGA
TCTCGTCGAGGGACTTTTGCTACGTCTCGCACAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig96608:362..499-

>mRNA_Ecto-sp13_S_contig96608.21291.1 ID=mRNA_Ecto-sp13_S_contig96608.21291.1|Name=mRNA_Ecto-sp13_S_contig96608.21291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96608:362..499- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGGACTCAGTCAACACGTCAGACTCGCAACTGGTGCGCTCATTGGCCCC
TGACGCCAGGCTGGTGTATATGCAGGGAAAGCCGAAGAGGGGGGGCATGA
TCTCGTCGAGGGACTTTTGCTACGTCTCGCACAAGTGA
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