mRNA_Ecto-sp13_S_contig9655.21285.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9655.21285.1
Unique NamemRNA_Ecto-sp13_S_contig9655.21285.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9655.21285.1 vs. uniprot
Match: A0A6H5KSJ1_9PHAE (Smr domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSJ1_9PHAE)

HSP 1 Score: 543 bits (1398), Expect = 1.110e-188
Identity = 271/291 (93.13%), Postives = 280/291 (96.22%), Query Frame = 1
Query:    1 MAPPKDAQTPVNPNTPAQSTFTWYRVLAVIVVLVASTQTGFTNTFIGKAVVNFANCVAHDQKQTMGGCLSNVIGEIFGTNKASGSSQNAPVTGTAPDYGSTAVHPPDNLPNKVFDEHDRPQHHYDEHGARIFPDAIIHREEADYQAKLRSSKLEESQKAYQAGHKANAHELSVEGKKHGHLMEAANKKAAEAITKPQNSNKTGVLDLHGLYVAEATEATASFLHFQKKAKKFRAVEIITGAGHHSQGHQAKIRPAIEKLISGMDLPYHTPPHNDGAFIVEMYSNQDLVDQM 873
            MAPPK AQTPVNPN PAQ TFTWYRVLAVIVV+VASTQTGFTNTFIGKAVVNFANCVA+DQKQTMGGCLSNVIGEIFGTNKASGSSQ+APVTGTAP++GST VHPPDNLPNKVFDEHDRPQHHYDEHGARIFPDAI+HREEADYQAKLRSSKL ESQKAYQAGHKANAHELSVEGKKHGHLMEAANKKAAEAI KPQNS KTGVLDLHGLYVAEATEATA+FLHFQK AK+FR VE+ITGAGHHSQGHQAKIRP IEKLIS MDLPYHTPPHNDGAFIVEMYSNQDLVDQM
Sbjct:    1 MAPPKYAQTPVNPNAPAQPTFTWYRVLAVIVVVVASTQTGFTNTFIGKAVVNFANCVAYDQKQTMGGCLSNVIGEIFGTNKASGSSQHAPVTGTAPNHGSTGVHPPDNLPNKVFDEHDRPQHHYDEHGARIFPDAILHREEADYQAKLRSSKLAESQKAYQAGHKANAHELSVEGKKHGHLMEAANKKAAEAIIKPQNSEKTGVLDLHGLYVAEATEATAAFLHFQKNAKEFREVEVITGAGHHSQGHQAKIRPTIEKLISSMDLPYHTPPHNDGAFIVEMYSNQDLVDQM 291          
BLAST of mRNA_Ecto-sp13_S_contig9655.21285.1 vs. uniprot
Match: A0A7S3Y4T3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4T3_HETAK)

HSP 1 Score: 129 bits (325), Expect = 5.930e-30
Identity = 72/158 (45.57%), Postives = 96/158 (60.76%), Query Frame = 1
Query:  373 DEHGARIFPDAIIH-REEADYQAKLRSSKLEESQKAYQAGHKANAHELSVEGKKHGHLMEAANKKAAEAITKPQNSNKTGVLDLHGLYVAEATEATASFLHFQKKAKKFRAVEIITGAGHHSQGHQAKIRPAIEKLISGMDLPYHTPPHNDGAFIVEM 843
            D  GAR+F +A    R+EA+  AK ++   E S++AY  G K  A ELS EGK    LME +N +A E + K Q S + GV+DLHGLYV EAT+ T  FL   K   +   VEIITG G HS+GH+AKI+PAI  L+   +L +   P+N G  +V +
Sbjct:  123 DSTGARVFSEAYYKFRDEANELAKTKNDCFERSKQAYSEGDKKRAKELSDEGKVASKLMEVSNMRAVEELMKTQRSYEKGVIDLHGLYVKEATQVTRDFLEKVKSTGRLSEVEIITGRGRHSEGHRAKIKPAIAALLEASNLDFEEKPNNPGDLVVHL 280          
BLAST of mRNA_Ecto-sp13_S_contig9655.21285.1 vs. uniprot
Match: A0A7S4DAT8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAT8_HETAK)

HSP 1 Score: 124 bits (310), Expect = 7.190e-29
Identity = 71/158 (44.94%), Postives = 94/158 (59.49%), Query Frame = 1
Query:  373 DEHGARIFPDAIIH-REEADYQAKLRSSKLEESQKAYQAGHKANAHELSVEGKKHGHLMEAANKKAAEAITKPQNSNKTGVLDLHGLYVAEATEATASFLHFQKKAKKFRAVEIITGAGHHSQGHQAKIRPAIEKLISGMDLPYHTPPHNDGAFIVEM 843
            D +GAR+F D     R++A+  A+ R    + S+KAY  G K  A ELS EGKK G LM+ AN +A E + K Q   + GV+DLHGLYV EA E T  FL   + A   +A EIITG GHHS+GH AKI+PAI+ +I      +    +N G  +V +
Sbjct:   37 DSNGARVFSDVYYKFRDQANEMAQKRGDFFDRSKKAYSEGDKKRAKELSDEGKKAGSLMDEANSRAVEELMKTQRHYEQGVIDLHGLYVKEAQEVTKEFLKKVQSAGLSQA-EIITGQGHHSEGHHAKIKPAIKSMIEADKFSFEEKANNPGTLVVNL 193          
BLAST of mRNA_Ecto-sp13_S_contig9655.21285.1 vs. uniprot
Match: A0A448ZAJ1_9STRA (Smr domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZAJ1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.450e-20
Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  466 SQKAYQAGHKANAHELSVEGKKHGHLMEAANKKAAEAITKPQNSNKTGVLDLHGLYVAEATEATASFLHFQKKA--KKFRAVEIITGAGHHSQGHQAKIRPAIEKLISGMDLPYHTPPHNDGAFIVEMYSNQ 855
            SQ+AYQ G K  AH LS E K        AN KAA+ I +PQ+   +G +DLHGL++ EAT AT  FL +  K      + V IITGAGHHS+ H+A IRP +E+++    L Y +  H +GAF + +   Q
Sbjct:   59 SQEAYQKGDKKKAHTLSEEKKDWQKKQNDANIKAAKLILEPQSWQTSGEIDLHGLFLQEATNATLEFLKYWSKKVWSDAKIVLIITGAGHHSENHKAVIRPHVEQILQEQHLDYKSV-HGNGAFEITLKPRQ 189          
BLAST of mRNA_Ecto-sp13_S_contig9655.21285.1 vs. uniprot
Match: A0A8H3HGX6_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3HGX6_9AGAM)

HSP 1 Score: 97.4 bits (241), Expect = 5.460e-19
Identity = 63/144 (43.75%), Postives = 83/144 (57.64%), Query Frame = 1
Query:  415 REEADYQAKLRSSKLEESQKAYQAGHKANAHELSVEGKKHGHLMEAANKKAAEAITKPQNSNKT-GVLDLHGLYVAEATEATASFLHFQKKAKKFRAVEIITGAGHHSQGHQAKIRPAIEKLISGMDLPYHTPPHNDGAFIVEM 843
            REE D  AK      + SQKAYQ G  A A ELS EGK H   ME  NK+A++ I +  N +     LDLHGLYV EA E T + +    + +  + + II G G HSQGH AK++PAIE+L+    L  H  P+N G  +V++
Sbjct:   88 REEGDAMAKA----FDASQKAYQNGDGAKAKELSNEGKAHKAEMERLNKEASDWIFQQVNLDSAPDELDLHGLYVKEAIERTEAAVQ-AAQGRGDQQIRIIVGKGLHSQGHAAKLKPAIEELMVKYQLNAHIDPNNAGVLVVQL 226          
BLAST of mRNA_Ecto-sp13_S_contig9655.21285.1 vs. uniprot
Match: A0A0D7BUY5_9AGAR (DUF1771-domain-containing protein n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7BUY5_9AGAR)

HSP 1 Score: 97.4 bits (241), Expect = 6.050e-19
Identity = 65/162 (40.12%), Postives = 87/162 (53.70%), Query Frame = 1
Query:  373 DEHGARIFPDAIIHREEADYQAKLRSSKLEESQKAYQAGHKANAHELSVEGKKHGHLMEAANKKAAEAITKPQNSNKTGV-LDLHGLYVAEATEATASFLHFQKKAKKFRAVEIITGAGHHSQGHQAKIRPAIEKLISGMDLPYHTPPHNDGAFIVEMYSNQ 855
            DEH  R+       R+EA+ +    +   EES++AY +G+ A A ELS EGK H   M+  NKKA++ I    N +     +DLHGLYV EA E T + +  Q K +    V +I G G HS G QAKIRPAIE L+    L     PHN G  +V +   +
Sbjct:   83 DEHYRRL-------RDEANQEGDAMARCFEESKQAYTSGNGARAKELSNEGKAHQRRMQELNKKASDWIYTANNQDSGPTEIDLHGLYVKEAIERTDNAIE-QAKRRGDSEVRLIVGKGLHSNGGQAKIRPAIEDLMQKHSLVADLDPHNAGVIVVRIQGGR 236          
BLAST of mRNA_Ecto-sp13_S_contig9655.21285.1 vs. uniprot
Match: A0A1Y1UMT0_9TREE (Smr domain-containing protein n=1 Tax=Kockovaella imperatae TaxID=4999 RepID=A0A1Y1UMT0_9TREE)

HSP 1 Score: 94.4 bits (233), Expect = 8.700e-19
Identity = 52/122 (42.62%), Postives = 73/122 (59.84%), Query Frame = 1
Query:  496 ANAHELSVEGKKHGHLMEAANKKAAEAITKPQNSNKT-GVLDLHGLYVAEATEAT-ASFLHFQKKAKKFRAVEIITGAGHHSQGHQAKIRPAIEKLISGMDLPYHTPPHNDGAFIVEMYSNQ 855
            A AHELS+EGK+H    +  +++AA  I    N++   G +DLHGLYV EA + T A+    Q+  ++   + II G G HSQGH AKI+PA+E L+   +L  H  PHN G  IV++   Q
Sbjct:   22 ARAHELSMEGKEHARKQDEIDEQAANWIYYANNTDSPPGTIDLHGLYVQEAIQRTEAAITQAQQNGQE--EINIIVGKGIHSQGHVAKIKPAVEDLMRKYNLSAHLDPHNSGVLIVDLQGRQ 141          
BLAST of mRNA_Ecto-sp13_S_contig9655.21285.1 vs. uniprot
Match: A0A066VGX0_TILAU (DUF1771-domain-containing protein n=1 Tax=Tilletiaria anomala (strain ATCC 24038 / CBS 436.72 / UBC 951) TaxID=1037660 RepID=A0A066VGX0_TILAU)

HSP 1 Score: 97.1 bits (240), Expect = 2.390e-18
Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 1
Query:  457 LEESQKAYQAGHKANAHELSVEGKKHGHLMEAANKKAAEAITKPQNSNKT-GVLDLHGLYVAEATEATASFLHFQKKAKKFRAVEIITGAGHHSQGHQAKIRPAIEKLISGMDLPYHTPPHNDGAFIVEM 843
             +ES +AY AG +A A ELS EG +H   ME+ N++AA+ I K  N +     +DLHGLYV EA E T   +  + + +    + +ITG G+HS  H AKIRPA+EKL+  + L     PHN G  +V +
Sbjct:  156 FDESHRAYSAGDRARAKELSNEGHQHKERMESLNREAADWIFKANNEDSAPNEIDLHGLYVQEAIERTEVRIK-EAQRQGIPDLRVITGKGNHSAQHVAKIRPAVEKLMQDLHLSAEMDPHNAGVVVVHI 284          
BLAST of mRNA_Ecto-sp13_S_contig9655.21285.1 vs. uniprot
Match: A0A3M7MSY9_9EURO (Smr domain-containing protein (Fragment) n=3 Tax=unclassified Chaetothyriales TaxID=316340 RepID=A0A3M7MSY9_9EURO)

HSP 1 Score: 94.0 bits (232), Expect = 2.900e-18
Identity = 65/182 (35.71%), Postives = 96/182 (52.75%), Query Frame = 1
Query:  382 GARIFPDAIIHREEADY---------QAKLRSSKLEESQKAYQAGHKANAHELSVEGKKHGHLMEAANKKAAEAITKPQNSN---KTGVLDLHGLYVAEATEATASFLHFQKKAKKFRAVEIITGAGHHSQGHQAKIRPAIEKLISGMDLPYHTPPHNDGAFIVEMY--SNQDLVDQM*KYL 885
            G+R F  +     EA+Y         +A  RSS  + SQKAYQ G  A AH+LS EGK+HG  ME  NK+A+E I +  N+        +DLHG +V EA +     + + +   +   + +I G G+HS GH  KI+P +E++   + L YHT P N+G   V +   +N +L     K+L
Sbjct:   12 GSRPFNHSQSAEAEAEYDRLRALARQEAGKRSSCFDRSQKAYQRGDGAAAHQLSEEGKQHGAKMEEYNKQASEFIFRENNAPGRVPADTIDLHGQFVEEAEDILEERIKYAQSTGQ-NHLHVIVGKGNHSPGHVQKIKPRVEQVCRELGLQYHTEP-NEGRIYVNLQGGANDELEKLAKKFL 191          
BLAST of mRNA_Ecto-sp13_S_contig9655.21285.1 vs. uniprot
Match: UPI001C01D553 (uncharacterized protein n=1 Tax=Suillus subaureus TaxID=48587 RepID=UPI001C01D553)

HSP 1 Score: 90.5 bits (223), Expect = 1.510e-17
Identity = 61/148 (41.22%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  418 EEADYQAKLRSSKLEESQKAYQAGHKANAHELSVEGKKHGHLMEAANKKAAEAITKPQNSN-KTGVLDLHGLYVAEATEATASFLHFQKKAKKFRA-----VEIITGAGHHSQGHQAKIRPAIEKLISGMDLPYHTPPHNDGAFIVEM 843
            +E D  AK      ++S +AY     A A ELS +GKKH   MEA N +A+  I +  NS+ K G LDLHGLYV EA       L+  K  K+ R      + +I G G HS GH AKI+PA+E L+   +LP    P N G  IV++
Sbjct:   21 QEGDAMAKC----FQQSHEAYSRREGALAKELSEKGKKHERTMEALNAEASAWIFRENNSDCKPGELDLHGLYVKEA------ILYSDKAIKEARQRGDSQIRLIVGKGLHSDGHVAKIKPALEDLMKQHNLPVEVDPQNAGVLIVQL 158          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9655.21285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSJ1_9PHAE1.110e-18893.13Smr domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S3Y4T3_HETAK5.930e-3045.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4DAT8_HETAK7.190e-2944.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A448ZAJ1_9STRA1.450e-2043.94Smr domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A8H3HGX6_9AGAM5.460e-1943.75Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A0D7BUY5_9AGAR6.050e-1940.12DUF1771-domain-containing protein n=1 Tax=Cylindro... [more]
A0A1Y1UMT0_9TREE8.700e-1942.62Smr domain-containing protein n=1 Tax=Kockovaella ... [more]
A0A066VGX0_TILAU2.390e-1842.31DUF1771-domain-containing protein n=1 Tax=Tilletia... [more]
A0A3M7MSY9_9EURO2.900e-1835.71Smr domain-containing protein (Fragment) n=3 Tax=u... [more]
UPI001C01D5531.510e-1741.22uncharacterized protein n=1 Tax=Suillus subaureus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9655contigEcto-sp13_S_contig9655:1007..5141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score556.2
Seed ortholog evalue9e-156
Seed eggNOG ortholog2880.D8LQ36
Model size1945
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
EggNOG OGsKOG2401@1,KOG2401@2759
Ec32 ortholog descriptionDomain of unknown function DUF1771
Ec32 orthologEc-26_006280.1
Cds size876
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9655.21285.1prot_Ecto-sp13_S_contig9655.21285.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9655 1007..4072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464229.7004302-CDS-Ecto-sp13_S_contig9655:1006..11371681464229.7004302-CDS-Ecto-sp13_S_contig9655:1006..1137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9655 1007..1137 +
1681464229.7196743-CDS-Ecto-sp13_S_contig9655:1373..15491681464229.7196743-CDS-Ecto-sp13_S_contig9655:1373..1549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9655 1374..1549 +
1681464229.7300832-CDS-Ecto-sp13_S_contig9655:2600..26831681464229.7300832-CDS-Ecto-sp13_S_contig9655:2600..2683Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9655 2601..2683 +
1681464229.7418082-CDS-Ecto-sp13_S_contig9655:3054..31861681464229.7418082-CDS-Ecto-sp13_S_contig9655:3054..3186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9655 3055..3186 +
1681464229.7517478-CDS-Ecto-sp13_S_contig9655:3718..40721681464229.7517478-CDS-Ecto-sp13_S_contig9655:3718..4072Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9655 3719..4072 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464229.7624784-UTR-Ecto-sp13_S_contig9655:4072..51411681464229.7624784-UTR-Ecto-sp13_S_contig9655:4072..5141Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9655 4073..5141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9655.21285.1

>prot_Ecto-sp13_S_contig9655.21285.1 ID=prot_Ecto-sp13_S_contig9655.21285.1|Name=mRNA_Ecto-sp13_S_contig9655.21285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=292bp
MAPPKDAQTPVNPNTPAQSTFTWYRVLAVIVVLVASTQTGFTNTFIGKAV
VNFANCVAHDQKQTMGGCLSNVIGEIFGTNKASGSSQNAPVTGTAPDYGS
TAVHPPDNLPNKVFDEHDRPQHHYDEHGARIFPDAIIHREEADYQAKLRS
SKLEESQKAYQAGHKANAHELSVEGKKHGHLMEAANKKAAEAITKPQNSN
KTGVLDLHGLYVAEATEATASFLHFQKKAKKFRAVEIITGAGHHSQGHQA
KIRPAIEKLISGMDLPYHTPPHNDGAFIVEMYSNQDLVDQM*
back to top

mRNA from alignment at Ecto-sp13_S_contig9655:1007..5141+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9655.21285.1 ID=mRNA_Ecto-sp13_S_contig9655.21285.1|Name=mRNA_Ecto-sp13_S_contig9655.21285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9655:1007..5141+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACCCCCGAAGGACGCCCAAACTCCTGTAAATCCTAACACGCCGGC GCAGTCGACGTTCACGTGGTACAGGGTTCTAGCGGTAATCGTCGTCCTCG TTGCGTCAACGCAAACGGGCTTCACCAACACGTGAGACGGGGCGGCGCTA CACTGTAACGGTGACCACGATTGGAGTTGGATTCCGAGATGCTTGAGGTT GAGTAACCAACCACAGGGGCCGAAGCGGCAAAGATGGAGCAAGGGCAATC CCTCAAATAGAGTTGCTGAGAGGAGCTGGGGGAGATGAAAGCAGGACTGG AACCTGCACATGTTGATGTCGTTGTTCGCTTGAACTTGCGCTCGTGAATA ATTTGCTCCATTGACAGCTTCATCGGAAAAGCTGTTGTCAACTTCGCCAA CTGCGTCGCGCACGACCAAAAGCAAACCATGGGGGGCTGCCTGAGCAACG TGATCGGCGAGATCTTCGGGACTAACAAGGCTTCGGGGTCGTCACAGAAC GCGCCCGTCACAGGGACAGCGCCAGATTATGGGAGCACGGCAGGTGTGTT TGCGTAATTATGAAACTTGAGAAATGTTGCGGGCGAACATTGCCGAATTA CACAATTTCGGCGGGCAACAGCGGCAACAGACAAACGGCGAGCGCATGTG GTATTGCATGCGTTGATCCCTCGTCCAAGCGGATTTTGTACAGTGGGTCA CACTCACGTAGACGGATATTTTCTAAAATAAACGAAGCGTCGGTATGTCA TAGTCAAAGTATCTCAGAAAGCGATACCCGTGTAGACACAGGAAGAGGCG GGTGGTACGTAACACGTGTAACTCCATCTTTTTGTCTAAGATTCCAGATG GCTACTTGGTAGGACCGCCTTCGCGCGAAGTTTACGATATGCATACGGGG AAAGAGACCAGGGAGTGCGGACGTAGACCCTGTTCCCTGCAACACGTTTT CAAATGCATATGCATAATACGAACAACCCTGCGAAGGCTACTGCTTCTGT TACATGTCGTGAGGCTTTCCGGTGCGGAGAGGGCGTTCCGACGTGCGGGA GAAGAGCCCTTCCCGTCGGTGGCGGTATGCAAATGCAAATGCTATGTCAC GGCGTGGGCTGTGCTAGCTACCCACGGTGAAGAAGAAGAACATGGATTGG TCAATAGTCAGTGTAGCGTCCGCTTTGGCTGAATTGATAGAGAGAGGTGA AAGCCGGTCAGCTGGTCTTTCGTTGTCTCGAATTGTACTGCCTTAGGCAT AGCCCCTGCATCACCGAGTACGCCCGTTCTCTTGTTAATTAACTTAGATG ACATAATACATCACACACCCTGGTTGGTTTCCAAAGCTCGACTTCTCCAC AGCAGAGAAAGGGGGGGTGCCGAAAACGGCGGTGTTGGAGCCGTCTTGTG GAGGCTTTCCGATAACGCGTGGTTGCAGTTTGCATCCTGTTCGACGTGAA GTAGTCGAGCTTTGAAAATCGGTCCAGGGGGTTTGTGACACCTCTATGGT AAGTAGTCCTGCACTGCATCGACTACATGGAAAAAAGGGTTCGAAACTGT GGAGAATTATGAAACCCTGTGTGTTGTTTGTATTGTTGTTCCAGTGCACC CACCGGACAACCTCCCGAACAAGGTTTTCGACGAGCACGACAGACCGCAG CATCACTATGATGAACATGGGGCACGGGTGAGCAGCAGGACCTACAATCG TTCTTGACGCTGCCTCGACTGGGCAGAGTGTAGCACCCCCTGTGATGCGG AGATGGAACGGTTGGTGGTGGACACGGCAGCCAGCTACATTTGTGTGCGA CGACTTTTCGTCGCATGGATAGCCGACGTCGCGTACTATCCTACTTCTAC TTGCAGACGTGATTGCTGTTCCGTTTCTGAGGCGCCTTGGTAGTGCAGTG TGCGCATTTTGTTCAGGCTCGGCGGGAAGAGCCACAAACTCCATATCAGG CACTACATATCCCCTCGTTTCTTTTCTACATGAAGCTCCTGCGTTGCCGT TGACGGCCGCATTTTTCCTTCGTCTGTATTGTTACTCTTCCTCTCCAGAT CTTCCCCGACGCAATAATACACAGGGAAGAGGCCGATTACCAGGCTAAGC TCCGGTCATCTAAGCTCGAGGAGTCCCAGAAGGCGTACCAGGCCGGACAC AAGGCCAACGCCCATGAGCTGTCGGTAGAGGTCAGTCTGTTCATAGGGAT ACTGCTGCGACATCCGAAGGATGTCCGAAGTGGTGCTGTATTTGATATTT GCTATTGTGTTTCAATGGTTTAGGACTAAATACTGTTTTGAATATGCATG TGTCCGGGAGAGAGGTCTCTGTTCAACGTGCATTCCGAAGAGGGAAATGT GTGGTTTCCTTGAAGCGACGATGAGGCTACGAGTTATTAGGGCACTATGT AGCAGCCCCACCCTGAAGGTGACGGGAGATTTCTGGGTGTGGAGGAGGTG CGAGATCTAGAGTACCTGTCCCAGGGTCAACCACCATTCCTACCGTATTG TTGTATCAACTGATTCCTTTCTCGCGGATACGTCGATGTGAGTTTGTGAT CTTGCTATGGTAGCGAGCGTCAAGTTGTGGACTGCCTCCCCATTCGCATG CACAACCAAGAACCATCCTTTGTGATGTTTTACCGCATTCCCGACGCGTT TCGCATCCGCCGTGTGTTCTTCCAAACTTAAAACGTTTCCAACCGCACAA ACGAACGAAAAGGGGAAGAAGCACGGACATTTGATGGAGGCGGCCAACAA AAAAGCTGCGGAGGCCATCACCAAGCCTCAGAACTCCAACAAAACGGGAG TGCTTGACCTGCACGGCCTGTATGTAGCGGAGGCTACGGAGGCAACGGCC TCTTTCCTCCACTTTCAGAAGAAGGCCAAGAAGTTCAGGGCGGTGGAGAT TATCACGGGTGCGGGACACCATAGCCAAGGGCATCAGGCTAAGATCAGGC CAGCCATCGAAAAGCTCATCAGCGGCATGGATCTGCCCTACCATACCCCA CCCCACAACGACGGCGCGTTCATCGTAGAGATGTACTCTAACCAAGACCT CGTGGACCAGATGTAGAAATATCTTGTGTTTCCCATGTAGCATACGCATG CGGCGCCTCTCAGCAACGTGTGGTGCAGATTGCCAATTGTTTAGATTTTC GAACGTATTATGTAGTGGGAGCGTTTGCTCTAGAACGATGGTATGCGGTA AGCCCTTTTGCGCCCTGTTTCACGTGTGGCTTGCAGACAATGGCTTGTAG ATGCACGTAGCCTGCATGTAGTAGCTTTTCGGCCAGCCTTTTGGCGAACC ATTCGTATTTGCTCCTTTGTGTTGGTCCTAGAATACAGCTTATGTTTTTC GTATGTTCTCCTTTTAGTGATGAGTTGTTTACGACGCGCACAAAGTTTGA GAAGTATGACGGCCTTCAATACCCCGGTGTTTCCCCATTGAGAATGGTGA AGCGGAACGTTGTGGAATAAATATACCCGTGCGTTGCAACTGCGTGGGGG CTCGGGTCATGTTTCGGATGGCTGCGCCAAGCGTCTCTTCGCAGGGTGAG TGGCGATGTCGGCGGTTCGGTTTGTTTGATTGTATTTTTTTTTTGTCTTC GCTCCAAATCAGCGCTCACAGCATTATTAGTGTCGTTTTCTCCAACCCGT GGTCACATGGAAGGGCCCCTCTCTGCCCTCCCCTCCTGCGGTGCTTTGCC TTCGAATTTTAATGCGAGAAGAGTTCAACACTCTCCTGCAATGCGAGAAG AGTTTAGCATGCAAGAAAAGCTCGTTTATGCCGGGATTCGGACCCCTCGC CTGGCCTCTAGAGGGTGTCGAAGGTACCAACTAGACCACCGGGGCGACCG GCTCGTGTGTGGGCACGTGAACTCTTTCTAGTCCACATGAGCGCAGCTTC ACGGCTCGACCTGTGTGCGCTTCTGTACGTGTTGTTGGAGTTGGAATGAG TTTGAGGAGATACATAAAAGTCTCGACGTTGATACCATCGGGTACAGTGT GGTCAAGCATCCTATTGCTAATGTTGAGAACGTATGTGCCGGTTTGTTTG CGAGTTTATCCAGCTACAAGTAATACGTACGGGATGAAGAAAATTCGAGA GAATCCGTGTGTTTTAAGACACGATGTACTTCGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9655:1007..5141+

>mRNA_Ecto-sp13_S_contig9655.21285.1 ID=mRNA_Ecto-sp13_S_contig9655.21285.1|Name=mRNA_Ecto-sp13_S_contig9655.21285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=876bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9655:1007..5141+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACCCCCGAAGGACGCCCAAACTCCTGTAAATCCTAACACGCCGGC
GCAGTCGACGTTCACGTGGTACAGGGTTCTAGCGGTAATCGTCGTCCTCG
TTGCGTCAACGCAAACGGGCTTCACCAACACCTTCATCGGAAAAGCTGTT
GTCAACTTCGCCAACTGCGTCGCGCACGACCAAAAGCAAACCATGGGGGG
CTGCCTGAGCAACGTGATCGGCGAGATCTTCGGGACTAACAAGGCTTCGG
GGTCGTCACAGAACGCGCCCGTCACAGGGACAGCGCCAGATTATGGGAGC
ACGGCAGTGCACCCACCGGACAACCTCCCGAACAAGGTTTTCGACGAGCA
CGACAGACCGCAGCATCACTATGATGAACATGGGGCACGGATCTTCCCCG
ACGCAATAATACACAGGGAAGAGGCCGATTACCAGGCTAAGCTCCGGTCA
TCTAAGCTCGAGGAGTCCCAGAAGGCGTACCAGGCCGGACACAAGGCCAA
CGCCCATGAGCTGTCGGTAGAGGGGAAGAAGCACGGACATTTGATGGAGG
CGGCCAACAAAAAAGCTGCGGAGGCCATCACCAAGCCTCAGAACTCCAAC
AAAACGGGAGTGCTTGACCTGCACGGCCTGTATGTAGCGGAGGCTACGGA
GGCAACGGCCTCTTTCCTCCACTTTCAGAAGAAGGCCAAGAAGTTCAGGG
CGGTGGAGATTATCACGGGTGCGGGACACCATAGCCAAGGGCATCAGGCT
AAGATCAGGCCAGCCATCGAAAAGCTCATCAGCGGCATGGATCTGCCCTA
CCATACCCCACCCCACAACGACGGCGCGTTCATCGTAGAGATGTACTCTA
ACCAAGACCTCGTGGACCAGATGTAG
back to top