mRNA_Ecto-sp13_S_contig9652.21282.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9652.21282.1
Unique NamemRNA_Ecto-sp13_S_contig9652.21282.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9652.21282.1 vs. uniprot
Match: D8LIS9_ECTSI (Branched chain amino acid aminotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIS9_ECTSI)

HSP 1 Score: 577 bits (1487), Expect = 5.040e-203
Identity = 277/289 (95.85%), Postives = 281/289 (97.23%), Query Frame = 1
Query:    7 NPAEETCMQGDKNTEEYVRPSTTTKLEVPEGGELLKDGTVRINVWASPRSLSTALMYSFAQRPDCVVYDEPLYAHFLRTHPEDETWRPYRDQVFREQARALDSDGDRWIKEVALGPTPKPVVYMKHMAKQMRNLDLSFLPKCRNIIQIRTPIHMLPSWNTNIHANLKEIGMLDLLHMYSLVRAMGQEPIVIDAELLRANPEGVLREVSEMAGIPYAPEQLSWEAGPKPYDGCWAYVWYKGCRKSTCFDNSPRYVKFDQNLAPLLEECMPIYQLLRSKAITGFGKLGKVR 873
            NPAEE   Q DK++EEYVRPSTTTKLEVPEGGELLKDGTVRINVWASPRSLSTALMYSFAQRPDCVVYDEPLYAHFLRTHPEDETWRPYRD+VFREQ    DSDGDRWIKEVALGPTPKPVVYMKHMAKQMRNLDLSFLPKCRNIIQIRTPIHMLPSWNTNIHANLKEIGMLDLLHMYSLVRAMGQEPIVIDAELLRANPEGVLREVSEMAGIPYAPEQLSWEAGPKPYDGCWAYVWYKGCRKSTCFDNSPRYVKFDQNLAPLLEECMPIYQLLRSKAITGFGKLGKV+
Sbjct:    7 NPAEEASKQDDKDSEEYVRPSTTTKLEVPEGGELLKDGTVRINVWASPRSLSTALMYSFAQRPDCVVYDEPLYAHFLRTHPEDETWRPYRDEVFREQ----DSDGDRWIKEVALGPTPKPVVYMKHMAKQMRNLDLSFLPKCRNIIQIRTPIHMLPSWNTNIHANLKEIGMLDLLHMYSLVRAMGQEPIVIDAELLRANPEGVLREVSEMAGIPYAPEQLSWEAGPKPYDGCWAYVWYKGCRKSTCFDNSPRYVKFDQNLAPLLEECMPIYQLLRSKAITGFGKLGKVQ 291          
BLAST of mRNA_Ecto-sp13_S_contig9652.21282.1 vs. uniprot
Match: A0A4Y7LAH3_PAPSO (Uncharacterized protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7LAH3_PAPSO)

HSP 1 Score: 202 bits (513), Expect = 2.680e-57
Identity = 108/238 (45.38%), Postives = 149/238 (62.61%), Query Frame = 1
Query:  130 INVWASPRSLSTALMYSFAQRPDCVVYDEPLYAHFLRTHPEDETWRPYRDQVFREQARALDSDGDRWIKEVALGPTPKPVVYMKHMAKQ-MRNLDLSFLPKCRNIIQIRTPIHMLPSWNTNIHANLKEIGMLDLLHMYSLVRAMGQEPIVIDAELLRANPEGVLREVSEMAGIPYAPEQLSWEAGPKPYDGCWAYVWYKGCRKSTCFDNSPRY-VKFDQNLAPLLEECMPIYQLLRSK 837
            I+ W++PRSLST+LMYSF+QR D  V DEPLYAHFLR    +   RPYRD+V  +    +DSDG+R ++E+  GP  K   + KH+ KQ +  L    + K ++ I IR P+++LPS++  +  +  E+G+ +L+ +YS +  +G  P +IDAE L+ +PE VLR + E  GIP+ P  L WEAGPKP DG WA  WYK   KSTCF     Y      +L  LLEE +P Y +LR K
Sbjct:   10 IHSWSAPRSLSTSLMYSFSQRDDIEVLDEPLYAHFLRVTGAE---RPYRDEVLLK----MDSDGNRVVEEMIFGPGEKRYRFCKHIGKQRVPGLSSDLMKKGKHFILIRNPLNILPSFDKVVPPSFLELGLAELVSIYSELSDLGTVPPIIDAEDLQQDPEAVLRGLCEDLGIPFQPAVLKWEAGPKPVDGLWAPWWYKSVHKSTCFKAVKEYPTPLPPSLYDLLEESLPFYNMLRKK 240          
BLAST of mRNA_Ecto-sp13_S_contig9652.21282.1 vs. uniprot
Match: A0A2E3YEV7_9BACT (Sulfotransferase family protein n=3 Tax=FCB group TaxID=1783270 RepID=A0A2E3YEV7_9BACT)

HSP 1 Score: 193 bits (490), Expect = 2.850e-57
Identity = 99/242 (40.91%), Postives = 144/242 (59.50%), Query Frame = 1
Query:  124 VRINVWASPRSLSTALMYSFAQRPDCVVYDEPLYAHFLRTHPEDETWRPYRDQVFREQARALDSDGDRWIKEVALGPTPKPVVYMKHMAKQMRNLDLSFLPKCRNIIQIRTPIHMLPSWNTNIHA-NLKEIGMLDLLHMYSLVRAMGQEPIVIDAELLRANPEGVLREVSEMAGIPYAPEQLSWEAGPKPYDGCWAYVWYKGCRKSTCFDNS-PRYVKFDQNLAPLLEECMPIYQLLRSKAI 843
            +RINVW+ PR++STALMYSFAQRPD  V DEPLYAH+L +H   + + P  D+V   Q    D+DG+  +++V LGP  + V+++K M   +  LDL FL K  N+I  R P+ MLPS+   +   +L++ G    L +   +  +GQEP V+D+     +P  VLR++ E  G+ +    L W+AGP+  DG WA  WY    +ST F    P+   F   L PLL+EC P+Y+ L  +A+
Sbjct:    5 LRINVWSGPRNISTALMYSFAQRPDTRVVDEPLYAHYL-SHTPAQQYHPAADEVLASQ----DNDGEAVVRDVILGPCDRQVLFLKQMTHHLVELDLGFLAKTMNVILTRDPVDMLPSYQQQVETPSLRDTGYPQHLELLEALHEIGQEPTVLDSRETLRDPPSVLRQLCERIGLTFDESMLQWDAGPRDEDGVWAPHWYASVHRSTGFQPYVPKKEPFPDALRPLLKECQPLYEQLARRAL 241          
BLAST of mRNA_Ecto-sp13_S_contig9652.21282.1 vs. uniprot
Match: A0A2T7CCE8_9POAL (Uncharacterized protein n=11 Tax=PACMAD clade TaxID=147370 RepID=A0A2T7CCE8_9POAL)

HSP 1 Score: 200 bits (508), Expect = 1.740e-56
Identity = 108/240 (45.00%), Postives = 153/240 (63.75%), Query Frame = 1
Query:  118 GTVRINVWASPRSLSTALMYSFAQRPDCVVYDEPLYAHFLRTHPEDETWRPYRDQVFREQARALDSDGDRWIKEVALGPTPKPVVYMKHMAKQ-MRNLDLSFLPKCRNIIQIRTPIHMLPSWNTNIHANLKEIGMLDLLHMYSLVRAMGQEPIVIDAELLRANPEGVLREVSEMAGIPYAPEQLSWEAGPKPYDGCWAYVWYKGCRKSTCFDNSPRY-VKFDQNLAPLLEECMPIYQLLR 831
            G V I+ W++PRSLST+LMYSFAQR D  V DEPLYA+FLR    D   RPYR+ +  +  + L  DG++ +KEV  GP  K   Y KH++KQ + NL    + K ++ I IR P+++LPS++  I  +  E+G+ +L+ +YS +  +G+ P VIDA+ L+  PE VLR + E  GIP+ P+ L WEAGPK +DG WA  WY+   KST F NS +Y + F      LLE+ +P Y +L+
Sbjct:   12 GPVVIHAWSAPRSLSTSLMYSFAQRDDMEVLDEPLYANFLRVTGLD---RPYREDLLSKMEQDL--DGNKVVKEVIFGPGEKTYRYCKHISKQHLPNLSSDLMKKGKHFILIRNPLNILPSFDKVIPPSFLELGIGELVSIYSELCGLGKPPPVIDADDLQREPEAVLRGLCEDLGIPFQPQMLKWEAGPKEFDGIWAPWWYRSVHKSTGFSNSRQYPLTFPSAYYDLLEQSLPFYNMLK 246          
BLAST of mRNA_Ecto-sp13_S_contig9652.21282.1 vs. uniprot
Match: D7CRP4_TRURR (Uncharacterized protein n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) TaxID=649638 RepID=D7CRP4_TRURR)

HSP 1 Score: 190 bits (483), Expect = 3.220e-56
Identity = 100/243 (41.15%), Postives = 145/243 (59.67%), Query Frame = 1
Query:  124 VRINVWASPRSLSTALMYSFAQRPDCVVYDEPLYAHFLRTHPEDETWRPYRDQVFREQARALDSDGDRWIKEVALGPTPKPVVYMKHMAKQMRNLDLSFLPKCRNIIQIRTPIHMLPSWNTNI-HANLKEIGMLDLLHMYSLVRAMGQEPIVIDAELLRANPEGVLREVSEMAGIPYAPEQLSWEAGPKPYDGCWAYVWYKGCRKSTCF-DNSPRYVKFDQNLAPLLEECMPIYQLLRSKAIT 846
            +R++VW+ PR++STALMYSF +R D  V DEPLY H+LR         P RD+V      ++D+DG+R ++EV LG    PVV  K+MA  +  L+ +FL +  N++  R P  MLPS    +    L++ G+ + + +   V   GQEP+VIDA+ L  +PEGVLR V    G+P+ P  L+W AGPKP DG WA  WY    +S+ F   +P+      +L PLLE C P+Y+ L + A++
Sbjct:    5 LRLSVWSGPRNVSTALMYSFRERADTTVVDEPLYGHYLRVSGAP---HPGRDEVLA----SMDTDGERVVREVLLGDYAAPVVMFKNMAHHLVGLERAFLGELTNVLLTRDPYDMLPSLAQRLPEPTLRDTGLTEQVALLEFVLERGQEPVVIDAKALLQDPEGVLRAVCRRLGLPFDPAMLAWPAGPKPEDGVWARHWYANVHRSSTFAPYTPKADPLPAHLTPLLEVCAPLYERLAAYAVS 240          
BLAST of mRNA_Ecto-sp13_S_contig9652.21282.1 vs. uniprot
Match: A0A4R1BR48_9ACTN (Sulfotransferase family protein n=2 Tax=Rubrobacter taiwanensis TaxID=185139 RepID=A0A4R1BR48_9ACTN)

HSP 1 Score: 190 bits (482), Expect = 4.550e-56
Identity = 100/244 (40.98%), Postives = 142/244 (58.20%), Query Frame = 1
Query:  118 GTVRINVWASPRSLSTALMYSFAQRPDCVVYDEPLYAHFLRTHPEDETWRPYRDQVFREQARALDSDGDRWIKEVALGPTPKPVVYMKHMAKQMRNLDLSFLPKCRNIIQIRTPIHMLPSWNTNIHA-NLKEIGMLDLLHMYSLVRAMGQEPIVIDAELLRANPEGVLREVSEMAGIPYAPEQLSWEAGPKPYDGCWAYVWYKGCRKSTCF-DNSPRYVKFDQNLAPLLEECMPIYQLLRSKAI 843
            G +++++W+ PR++STALMYSF QR D +V DEPLY H+L+    D           RE    +D DG+R ++EV LGP  +PV + K+MA  +  LD SFL +  N++ IR P  MLPS    I A +L++ G+ + + +   +   G EP+V+DA  +  +P GVLR      G+P+    LSW +GPKP DG WA  WY    +ST F +  P+   F + L PLLEEC P+Y  L   AI
Sbjct:    3 GCMKLSMWSGPRNVSTALMYSFRQRSDTLVVDEPLYGHYLKVTGADHPGA-------REVMEHMDCDGERVVREVMLGPCERPVHFFKNMAHHLAGLDRSFLREITNLLLIRDPREMLPSLANQIPAPSLRDTGLREQVEILEALLKRGAEPVVLDAREVLLDPAGVLRRACAKLGLPFEEAMLSWPSGPKPEDGIWAKHWYHNVHRSTTFGEYRPKTDPFPERLKPLLEECRPLYGQLHRYAI 239          
BLAST of mRNA_Ecto-sp13_S_contig9652.21282.1 vs. uniprot
Match: A0A328E3F6_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328E3F6_9ASTE)

HSP 1 Score: 197 bits (500), Expect = 1.970e-55
Identity = 105/237 (44.30%), Postives = 148/237 (62.45%), Query Frame = 1
Query:  130 INVWASPRSLSTALMYSFAQRPDCVVYDEPLYAHFLRTHPEDETWRPYRDQVFREQARALDSDGDRWIKEVALGPTPKPVVYMKHMAKQ-MRNLDLSFLPKCRNIIQIRTPIHMLPSWNTNIHANLKEIGMLDLLHMYSLVRAMGQEPIVIDAELLRANPEGVLREVSEMAGIPYAPEQLSWEAGPKPYDGCWAYVWYKGCRKSTCFDNSPRY-VKFDQNLAPLLEECMPIYQLLRS 834
            I+ W++PRSLST+LMYSFAQR D  V DEPLYA+FL+        RPYRD V       ++ DG++ +K++  GP  K   Y KHMAKQ +  L    + + ++ I IR PI +LPS++ ++ ++  E+G+ DL+ +YS +  +G+ P VIDA  LR +PE  L  + E  GIP+    L WEAG KPYDG WA  WY+   KSTCF    +Y + F  +L  LLE+ +P+Y +LRS
Sbjct:   11 IHSWSAPRSLSTSLMYSFAQRDDTEVLDEPLYAYFLKVTGAK---RPYRDAVLSN----MECDGNKVVKDIIFGPGEKKFRYCKHMAKQHLPGLTDELMKRGKHFILIRNPIEILPSFDEHVPSSFLELGLGDLVSLYSELSRLGKPPPVIDAADLRTDPEATLHGLCEDLGIPFQSTMLKWEAGAKPYDGIWAPWWYESIHKSTCFTPPRKYPLPFPLSLYELLEQSLPLYNMLRS 240          
BLAST of mRNA_Ecto-sp13_S_contig9652.21282.1 vs. uniprot
Match: A0A2E0ZEJ0_9CHLR (Sulfotransferase family protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0ZEJ0_9CHLR)

HSP 1 Score: 188 bits (477), Expect = 2.570e-55
Identity = 96/243 (39.51%), Postives = 144/243 (59.26%), Query Frame = 1
Query:  121 TVRINVWASPRSLSTALMYSFAQRPDCVVYDEPLYAHFLRTHPEDETWRPYRDQVFREQARALDSDGDRWIKEVALGPTPKPVVYMKHMAKQMRNLDLSFLPKCRNIIQIRTPIHMLPSWNTNI-HANLKEIGMLDLLHMYSLVRAMGQEPIVIDAELLRANPEGVLREVSEMAGIPYAPEQLSWEAGPKPYDGCWAYVWYKGCRKSTCFDN-SPRYVKFDQNLAPLLEECMPIYQLLRSKAI 843
            T RI +W+ PR++STALMYSFAQR D  V+DEPLYAH+L   P  E + P  ++V       +++DG++ ++++ LG   KPV++ KHM   + +LD  F+ +  N+I  R P+ MLPS+   +    L ++G    L +   ++++GQ P V+D++    NP GVL ++ +  GIP+    LSW AG +P DG W+  WY    +ST F    P+   F Q L PLL EC P Y+ L + AI
Sbjct:    4 TTRICLWSGPRNISTALMYSFAQRADTAVFDEPLYAHYLSKTPARE-YHPGAEEVIA----TMENDGEKVVQDLILGDHGKPVLFFKHMTHHLNDLDWGFMRQTVNVILTRDPVEMLPSYAKQVAQPALHDVGYALHLELLDYLQSIGQTPPVLDSKQTLLNPRGVLAKLCQQIGIPFDEAMLSWPAGARPEDGSWSKFWYDAVHRSTGFQKYKPKTAPFPQQLRPLLAECQPYYEKLAALAI 241          
BLAST of mRNA_Ecto-sp13_S_contig9652.21282.1 vs. uniprot
Match: A0A6G8QA12_9ACTN (Sulfotransferase family protein n=1 Tax=Rubrobacter tropicus TaxID=2653851 RepID=A0A6G8QA12_9ACTN)

HSP 1 Score: 187 bits (476), Expect = 3.860e-55
Identity = 101/246 (41.06%), Postives = 139/246 (56.50%), Query Frame = 1
Query:  124 VRINVWASPRSLSTALMYSFAQRPDCVVYDEPLYAHFLRT----HPEDETWRPYRDQVFREQARALDSDGDRWIKEVALGPTPKPVVYMKHMAKQMRNLDLSFLPKCRNIIQIRTPIHMLPSWNTNI-HANLKEIGMLDLLHMYSLVRAMGQEPIVIDAELLRANPEGVLREVSEMAGIPYAPEQLSWEAGPKPYDGCWAYVWYKGCRKSTCFDN-SPRYVKFDQNLAPLLEECMPIYQLLRSKAI 843
            ++++VW+ PR++STALMYSF QRPD +V DEPLY H+L+     HP DE           E    +D DGDR ++EV LGP    V + K+MA  + +LD  FL    N++  R P  MLPS    + +  +++ G+L  + +          P+V+DA+ L  +P GVLR V    GIP+  E L W AGPKP DG WA  WY     ST F +  P+   F Q L PLLEEC+P+Y+ L   A+
Sbjct:    5 LKLSVWSGPRNVSTALMYSFRQRPDTLVVDEPLYGHYLKVTRADHPGDE-----------EVLAVMDQDGDRVVQEVILGPCEMSVHFFKNMAHHLTDLDRGFLNSTTNVLLTRDPAEMLPSLARQLPNPTMRDTGLLQQVEILDHALRHDDVPVVLDAKQLLLDPPGVLRRVCGRLGIPFYEEMLRWPAGPKPEDGVWAKHWYANVHASTGFSSYQPKSDAFPQRLVPLLEECIPLYERLSRYAV 239          
BLAST of mRNA_Ecto-sp13_S_contig9652.21282.1 vs. uniprot
Match: A0A7C4VX92_9CHLR (Sulfotransferase family protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C4VX92_9CHLR)

HSP 1 Score: 187 bits (476), Expect = 4.220e-55
Identity = 102/243 (41.98%), Postives = 143/243 (58.85%), Query Frame = 1
Query:  121 TVRINVWASPRSLSTALMYSFAQRPDCVVYDEPLYAHFLRTHPEDETWRPYRDQVFREQARALDSDGDRWIKEVALGPTPKPVVYMKHMAKQMRNLDLSFLPKCRNIIQIRTPIHMLPSWNTNI-HANLKEIGMLDLLHMYSLVRAMGQEPIVIDAELLRANPEGVLREVSEMAGIPYAPEQLSWEAGPKPYDGCWAYVWYKGCRKSTCFDN-SPRYVKFDQNLAPLLEECMPIYQLLRSKAI 843
            T RI +W+ PR++STALMYSFAQR D  V DEPLYAH+L T  +  T+ P   +V   Q    ++DG + ++EV LG  P  +V+ KHM   + NLD  FL +  N++  R P  MLPS+  N+    L++    D L +   +R+ GQ P V++A+ +  NP GVL  + +  GIP+    LSW AGP+P DG WA  WY    +ST F+   P+   F ++L PLL EC P Y+ L + AI
Sbjct:    2 TKRICLWSGPRNISTALMYSFAQRADTTVVDEPLYAHYLST-TDAHTYHPGSAEVMAVQ----ENDGAKVVREVILGDYPTRLVFFKHMTHHLVNLDWDFLDQTINVLLTRDPRDMLPSYAKNVKQPTLRDTDYADHLKLLDYLRSRGQTPPVLEAKQVLLNPRGVLSRLCQQIGIPFDEAMLSWPAGPRPEDGVWAKHWYHSVHQSTGFEAYRPKASPFPEHLKPLLAECQPYYEQLAALAI 239          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9652.21282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIS9_ECTSI5.040e-20395.85Branched chain amino acid aminotransferase n=2 Tax... [more]
A0A4Y7LAH3_PAPSO2.680e-5745.38Uncharacterized protein n=3 Tax=Papaver somniferum... [more]
A0A2E3YEV7_9BACT2.850e-5740.91Sulfotransferase family protein n=3 Tax=FCB group ... [more]
A0A2T7CCE8_9POAL1.740e-5645.00Uncharacterized protein n=11 Tax=PACMAD clade TaxI... [more]
D7CRP4_TRURR3.220e-5641.15Uncharacterized protein n=1 Tax=Truepera radiovict... [more]
A0A4R1BR48_9ACTN4.550e-5640.98Sulfotransferase family protein n=2 Tax=Rubrobacte... [more]
A0A328E3F6_9ASTE1.970e-5544.30Uncharacterized protein n=2 Tax=Cuscuta sect. Clei... [more]
A0A2E0ZEJ0_9CHLR2.570e-5539.51Sulfotransferase family protein n=1 Tax=Anaeroline... [more]
A0A6G8QA12_9ACTN3.860e-5541.06Sulfotransferase family protein n=1 Tax=Rubrobacte... [more]
A0A7C4VX92_9CHLR4.220e-5541.98Sulfotransferase family protein n=1 Tax=Anaeroline... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9652contigEcto-sp13_S_contig9652:1271..6111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score568.2
Seed ortholog evalue2.2e-159
Seed eggNOG ortholog2880.D8LIS9
Model size873
KEGG rclassRC00006,RC00036
KEGG koko:K00826
KEGG ReactionR01090,R01214,R02199,R10991
KEGG Pathwayko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00019,M00036,M00119,M00570
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.branched-chain-amino-acid transaminase activity
EggNOG OGsCOG0115@1,KOG0975@2759
Ec32 ortholog descriptionbranched chain amino acid aminotransferase
Ec32 orthologEc-20_001390.1
EC2.6.1.42
Cds size846
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9652.21282.1prot_Ecto-sp13_S_contig9652.21282.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9652 1298..6111 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464229.5037758-UTR-Ecto-sp13_S_contig9652:1270..12971681464229.5037758-UTR-Ecto-sp13_S_contig9652:1270..1297Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9652 1271..1297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464229.516032-CDS-Ecto-sp13_S_contig9652:1297..13571681464229.516032-CDS-Ecto-sp13_S_contig9652:1297..1357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9652 1298..1357 +
1681464229.5267427-CDS-Ecto-sp13_S_contig9652:2033..21351681464229.5267427-CDS-Ecto-sp13_S_contig9652:2033..2135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9652 2034..2135 +
1681464229.5384276-CDS-Ecto-sp13_S_contig9652:2520..26401681464229.5384276-CDS-Ecto-sp13_S_contig9652:2520..2640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9652 2521..2640 +
1681464229.5482645-CDS-Ecto-sp13_S_contig9652:3192..32791681464229.5482645-CDS-Ecto-sp13_S_contig9652:3192..3279Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9652 3193..3279 +
1681464229.5581286-CDS-Ecto-sp13_S_contig9652:3654..37681681464229.5581286-CDS-Ecto-sp13_S_contig9652:3654..3768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9652 3655..3768 +
1681464229.568256-CDS-Ecto-sp13_S_contig9652:4284..43381681464229.568256-CDS-Ecto-sp13_S_contig9652:4284..4338Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9652 4285..4338 +
1681464229.5777466-CDS-Ecto-sp13_S_contig9652:5135..52871681464229.5777466-CDS-Ecto-sp13_S_contig9652:5135..5287Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9652 5136..5287 +
1681464229.586859-CDS-Ecto-sp13_S_contig9652:5567..56521681464229.586859-CDS-Ecto-sp13_S_contig9652:5567..5652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9652 5568..5652 +
1681464229.595716-CDS-Ecto-sp13_S_contig9652:6039..61111681464229.595716-CDS-Ecto-sp13_S_contig9652:6039..6111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9652 6040..6111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9652.21282.1

>prot_Ecto-sp13_S_contig9652.21282.1 ID=prot_Ecto-sp13_S_contig9652.21282.1|Name=mRNA_Ecto-sp13_S_contig9652.21282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=282bp
MQGDKNTEEYVRPSTTTKLEVPEGGELLKDGTVRINVWASPRSLSTALMY
SFAQRPDCVVYDEPLYAHFLRTHPEDETWRPYRDQVFREQARALDSDGDR
WIKEVALGPTPKPVVYMKHMAKQMRNLDLSFLPKCRNIIQIRTPIHMLPS
WNTNIHANLKEIGMLDLLHMYSLVRAMGQEPIVIDAELLRANPEGVLREV
SEMAGIPYAPEQLSWEAGPKPYDGCWAYVWYKGCRKSTCFDNSPRYVKFD
QNLAPLLEECMPIYQLLRSKAITGFGKLGKVR
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mRNA from alignment at Ecto-sp13_S_contig9652:1271..6111+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9652.21282.1 ID=mRNA_Ecto-sp13_S_contig9652.21282.1|Name=mRNA_Ecto-sp13_S_contig9652.21282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4841bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9652:1271..6111+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGGAAATCCCGCGGAGGAGACTTGCATGCAAGGCGACAAGAACACGGA GGAGTATGTACGGCCGTCGACCACGACGAAACTCGAGGTGCGTGTTCCGA GCCTTTTGTGTCCTCTTTTGTCAGCTGCTCGTGCAGGCTCGAGTGGACGA TTTCGCGCACACAATCACAAGCGTTTCATGTCAGCTGGAACAAGCCATTG GGTAGGGCTCGAGTCGATCGCGTTGTGTTTCCTGTGTGCCATATCCAGCA CCTTGGTTGTAGCGTGTGTTGACCGAACGGGGCATCCCGTTTCTCTTCGC AGGATTCGTCTGGATTTGAATTGCTGCCGGGTTGTGTTGTCCTCTATCCC CCCACACCGACGGTGTTGAGGACGCCCCCGTGGATACCCCCAACAAATAC TTGAAATCACTAGCTGCGGAGGAGTTACATTTCTCAAGTGTCGATCATCG GGGGAGAACTTGTCTCCGTCGATAATCGGGGCGATGATCTTGAAGGGGGG CTTGCCCGGGACCGACACAAGCGAGTAGCCAGCAGTGACAGACTTCCTTC GCGAGTTCGGTCAACGACTATTTATTTGGCTAGTAACCGCGTGACGCAGA AGGAATACTCAAGCTGTCTCGGTTCTCTGGAAAATGCCTGCCGGGTTCCC GCTACAGTGCCAATGAATCTGGCGCGCAGACACCGGCACTACTGACGTAT TTCCACTGCTGTCTTGCATAGTTTTCTGAAAAGCCAAAACAATCGCCTCC GTGGGTCTGTCAGGTGCCAGAGGGGGGTGAGCTGCTCAAGGACGGTACCG TGCGGATCAACGTTTGGGCTAGCCCGCGCTCGCTGAGCACAGCTCTCATG TACTCGTTCGCACAGGTATTTCTTCTGTGAACATTTATTGTTGCTTTTTG TTCCTGTAGCACTTCTACTCCCACGTAGTCCTTTGCACACGCGCTAGAGA GAGCCGCGAGTGCGCCATGTCCCTGGTGTAGTCGATGACGCGGGAGGGCA AAGTGTGGTGAAAGACGAGGTTTATTTTTTTGTTTGTCTTTTCTTTTGGA CATTCCCATGGGCGTGCAGCGATGTCTCGGTTGGTGTCTGTTTCGTACGA GGGCCGCATGAACCAACCGGCGAGGAGGAGAGTGTTGAACCCCAGTGGTG ACGAGACCAGCTGTGCCGTCCCGGAGAAATCGGTTTCGCTGTCGCCGTCC CTCCGACTCTATTTCGTTTTTTACCGTGACAACTGTCCATACCGACGCAG AGGCCGGACTGTGTTGTTTACGACGAGCCTTTGTACGCACACTTCCTTCG GACGCACCCGGAGGACGAGACATGGCGGCCCTACCGAGATCAGGTCTTCC GAGAACAGGCACGTGCATTGGTCACAGCTTGTTTGGGAGTCTCATTTGGG ATCGGGCGAGTCCGGAAGGCTTCGAAGGAGTGCGTGGAATCAAGCAAGTT TGTTTCTTTTGTCGTGGTAGTGGTAGTGTACCTCCTACGGAGTTGACGTG GTAAAGCGTTGGAGAACTACTGGCAATGCTATTTCTCGTGTTGATTCCGC AAGTCGAAGTAGGAGAAGAATGGAGATGGAGAAGGGCGGCGGGAGGACAA GTTGAGGGAAGCAGCAGGGTAGCAGTACACGGTGTCAGTGTATACCAGAC AAGCCGCCAAGCCTTCTACCTACAAGCACCTGTCATCTCCATGAAATGTT TAATCGACCACACATCTAGCAGTAACCAGCATCCAACCAAGTTCGACCCT CGAGATACAGTTTCAAGGAGGGGTGCTGCAAAGGAAATCATCACATTTTT ACATTGCATAGAATTTTGTGGCGTCTGGCCACACCTTCCAACCCCCCCGC CACCTCGCAATGAAGTTTCCTATTTGTTGCTCCTTACCTACGCCTCCCTT CGCTCGAATTCATTACGCTTAGGATTCCGACGGCGACCGATGGATCAAGG AGGTGGCGCTAGGCCCGACGCCCAAGCCGGTGGTCTACATGAAGCACATG GCCAAACAGGTTTGAGACGGCGCTAGTTTCGAATGTGCTGGGGGGGCCAA GTCGCGATCCCTTCATTGAGACCGTTATGTTGAACTCAGTCACCAATCGC GGTGAACCCAAGAACTTTTTTTTCCTTTGACATACGAAGGCTCACAAATA CGTCTTACCTCTGCCTCTACTGGTATGATACACCTCAAGGTAAGAATGCT TAATAATTTCGCTGCCGTTTATTACTTCGCCAACGTTCGCACCCAAGCGG TATGTTACGCGACTCCACCCTCTCTCCTTTTTAGGCTCTAGGACCCTTGC TGAATGCACAGTCTGTTTTCTTTGGAATCGTTTCGCGTTCTCACCTGCTA CATCTTCTGGCGACCCGCATGGGACACAACGCAGATGAGGAACCTGGATC TCTCCTTCCTGCCCAAGTGCCGAAACATCATCCAGATCAGGACCCCGATC CACATGCTCCCCTCCTGGAACACCAACATCCACGCGAACCTAAAGGAGGT AGGAACGTGCTGCGCCCCTGGCCCCTGTTTCCCTTCGGCATGAGTAAACC ACGCTTAGAGAACGTCGTCAGTTTATGTCCCAAGCGACACATATTCCCAC ACTTTGTGCTGATGAAGCTGTCTAGGCGAGGAAATTCGTGAACGAAGGAT GAATGTTTCATGACGCAGAGCGCCAAGGAATGCGCTCCTCGTCAGTAACT CACAAAGGTGTTTCTGCGTGCCGATGATAACGAAGGTTGTGCCTCGGAAA GGACGCGTTGTGCAGCAACTCTATGGAACAATCAACAGTTTCGCCCCTCC TGTCCCCCGAAGTAACGCACGACTGTTCCTGATTCCTAATCATTCATGTC TTCTTAGTCTGAACACTGCTGCACCCATTGTTGGCGGCGTCTTGTGCGCA CATTTGCTCACAACTACGGTGGGTACCACTGCTTCTTGTGATTTGCGCGG CATGTTGGTTTCGCTCCCTCTTTTGTTGTTGTTCCCTCTCCCTTGGGATG TTGGTCTTGTTCAGATCGGCATGCTGGACCTTTTGCACATGTACTCTCTG GTACGCGCCATGGGCCAGGTGAGATATTTATATTTTTCACTTGTTTTTTG GGTTTTGTCTCGGTCGCGTGCTTAGTTTTGTGTCCTCTTCCCAGAGTGGG TGCCGACACCAGCCGCAGTCTTGCGCTCAGGCCAGTTGCAAGAGTTGGCT CTTCCTGAGGTGTAATCTTGATTTTCCCGACGCTGTGGATCTGCCTACCT CTATCGGAACGAATCTGGTCCCCCCTGTGTTTTCCCCACCCTTGAGAACA CGGCTTGTTCCTTGTGATCCGACCAACGAGTTGGTGAGTGGTAAACGGGA GGCGAATGCAAAATATTGCTTCCTGGTTTTCAAGCGCTCATCCTCGAAAA ATGCTTGATCATGAACATTCGATTTTAATTTCATGGGTGGGATCTATATT ACTGCGCGGTGCGTTTCGTCGCACCTTGAACCGTAGCGTATACATCCTTG TGACCCTGCGAAGTCATGGCTAGTTTTGTGTACCCAACCCTTCGATGAAA ACGAGCGGAATGGAGTGAAAAAGGTGTTCGTTGTCGTCGTTCCCAGGGCC TCTACACGGGAAACCCGCGATGTGGTACCACATATGTGCCGAACGCCCCC TTTCCACCCTTCAGCAACGTTTTATGCAACCCCTACCTAAACCTCGCGTA CCCGTGGGGCACCGCACGGACCCCCCGAAGCCTCGTTGTCAACGATAAGC TTGTTTTCGTGTAAATATGTGCTTGTGACCCGACCCTTCCCTGCAACCAT ACGAGGCTATCAAATTTTGTTCCACCCGTTTTGCTCTTGCCGGTACAACT CTCTTTTGTCGATAGGAACCAATAGTGATCGACGCCGAGCTGCTTCGTGC CAACCCAGAAGGTGTGTTGCGGGAGGTGTCGGAAATGGCTGGTATCCCTT ACGCCCCAGAACAGCTGAGCTGGGAGGCTGGTCCCAAGCCCTACGACGGC TGCTGGGCATACGTCTGGTGAGGGCACTGATTTGGTGCAAAGAGCGATCT CGCAGGGAACGTGTTAAATGCATCGGCAACAAACCTAATGAGATAGGGGT TTTCGTTAAATAAGACTGATGTGTGGCTGCGGCTGCACAGGGTGTGCTTC GGAGCAACGACCCACTCGTGTACGGTAGTTTACACACCGTCTGGGGAAAG ACGACAAAAAGTTGAATGTACTCTTCGCTGGCTGGAACTATGCGTGCCTC ATACATGCGGGTTTGGTTGTGTTGGGTTTTGTGCCTACCATACTCAGGTA CAAGGGGTGCAGAAAGTCGACATGCTTTGACAACTCCCCGCGCTACGTCA AGTTCGACCAGAACCTGGCGCCGCTCCTGGAGGTGAGCAAGGCATACACC GGAAAGGCCACGCAACAAATGAGCGCCTTTGCGCGACTCTGTCTATATGG TGTTTTTCGTTGTTGCGATTTACCACATCAAAATGATTGTGAGAAGGTCG CGGGCTGTCTGTCGTCTTGTATCCCCATGGGTCTGGGGGGGGGTGTCACG ACTCAGTTGTTCGCCTTCGTCCAATATGAGCACTCGTTCCTGCTATGTAT GTAAGAGTGTGATACATTGAAGGGGAGCAGAAGAGAGTCGTTGTAGTTTC AACACCTCTCGCATAGAAACAATTGCCGCGCGTTTTTGTCTTTCCTGAAA AATTTCTTGTAGTCTGTCCTGTGAGTGTCGTTACTGAATTCTGACCGCGT TGCATCGAAACTCAAACAGGAGTGCATGCCTATCTACCAGCTCCTGAGAT CCAAGGCCATCACGGGGTTCGGAAAGCTCGGAAAGGTCAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9652:1271..6111+

>mRNA_Ecto-sp13_S_contig9652.21282.1 ID=mRNA_Ecto-sp13_S_contig9652.21282.1|Name=mRNA_Ecto-sp13_S_contig9652.21282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9652:1271..6111+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAGGCGACAAGAACACGGAGGAGTATGTACGGCCGTCGACCACGAC
GAAACTCGAGGTGCCAGAGGGGGGTGAGCTGCTCAAGGACGGTACCGTGC
GGATCAACGTTTGGGCTAGCCCGCGCTCGCTGAGCACAGCTCTCATGTAC
TCGTTCGCACAGAGGCCGGACTGTGTTGTTTACGACGAGCCTTTGTACGC
ACACTTCCTTCGGACGCACCCGGAGGACGAGACATGGCGGCCCTACCGAG
ATCAGGTCTTCCGAGAACAGGCACGTGCATTGGATTCCGACGGCGACCGA
TGGATCAAGGAGGTGGCGCTAGGCCCGACGCCCAAGCCGGTGGTCTACAT
GAAGCACATGGCCAAACAGATGAGGAACCTGGATCTCTCCTTCCTGCCCA
AGTGCCGAAACATCATCCAGATCAGGACCCCGATCCACATGCTCCCCTCC
TGGAACACCAACATCCACGCGAACCTAAAGGAGATCGGCATGCTGGACCT
TTTGCACATGTACTCTCTGGTACGCGCCATGGGCCAGGAACCAATAGTGA
TCGACGCCGAGCTGCTTCGTGCCAACCCAGAAGGTGTGTTGCGGGAGGTG
TCGGAAATGGCTGGTATCCCTTACGCCCCAGAACAGCTGAGCTGGGAGGC
TGGTCCCAAGCCCTACGACGGCTGCTGGGCATACGTCTGGTACAAGGGGT
GCAGAAAGTCGACATGCTTTGACAACTCCCCGCGCTACGTCAAGTTCGAC
CAGAACCTGGCGCCGCTCCTGGAGGAGTGCATGCCTATCTACCAGCTCCT
GAGATCCAAGGCCATCACGGGGTTCGGAAAGCTCGGAAAGGTCAGA
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