mRNA_Ecto-sp13_S_contig96384.21263.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig96384.21263.1
Unique NamemRNA_Ecto-sp13_S_contig96384.21263.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig96384.21263.1 vs. uniprot
Match: A0A6H5L1Y5_9PHAE (MGS-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1Y5_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 5.820e-20
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 VKVTRALLSVSDKDGLVELATSLASHGVELLSTGGTAKAMRAAGLTVTDV 150
            VKVTRALLSVSDKDGLVELATSLASHGVELLSTGGTAKAMRAAGLTVTDV
Sbjct:   16 VKVTRALLSVSDKDGLVELATSLASHGVELLSTGGTAKAMRAAGLTVTDV 65
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BLAST of mRNA_Ecto-sp13_S_contig96384.21263.1 vs. uniprot
Match: A0A514BWB5_9GAMM (Bifunctional purine biosynthesis protein PurH n=1 Tax=Lysobacter alkalisoli TaxID=2591633 RepID=A0A514BWB5_9GAMM)

HSP 1 Score: 75.9 bits (185), Expect = 8.140e-15
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 VKVTRALLSVSDKDGLVELATSLASHGVELLSTGGTAKAMRAAGLTVTDV 150
            VK+ RALLSVSDK GL+ELAT+LA HGVELLSTGGTAKA+R AGLTV DV
Sbjct:    6 VKIRRALLSVSDKTGLIELATALAGHGVELLSTGGTAKAIRDAGLTVRDV 55
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BLAST of mRNA_Ecto-sp13_S_contig96384.21263.1 vs. uniprot
Match: A0A8F9HV56_9SPHN (Bifunctional purine biosynthesis protein PurH n=2 Tax=unclassified Polymorphobacter TaxID=2629224 RepID=A0A8F9HV56_9SPHN)

HSP 1 Score: 75.1 bits (183), Expect = 1.520e-14
Identity = 39/50 (78.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VKVTRALLSVSDKDGLVELATSLASHGVELLSTGGTAKAMRAAGLTVTDV 150
            +K+TRALLSVSDK GLV+L T+LA HGVEL+STGGTA A+RAAGLTVT+V
Sbjct:    4 IKITRALLSVSDKTGLVDLGTALARHGVELVSTGGTAAALRAAGLTVTEV 53
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BLAST of mRNA_Ecto-sp13_S_contig96384.21263.1 vs. uniprot
Match: A0A7G5IHR2_9SPHN (Bifunctional purine biosynthesis protein PurH n=1 Tax=Sandaracinobacter sp. M6 TaxID=2759707 RepID=A0A7G5IHR2_9SPHN)

HSP 1 Score: 74.7 bits (182), Expect = 2.080e-14
Identity = 38/50 (76.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VKVTRALLSVSDKDGLVELATSLASHGVELLSTGGTAKAMRAAGLTVTDV 150
            ++++RALLSVSDKDGLV+ A +LA HGVELLSTGGTA+A+R AGLTVTDV
Sbjct:    4 IRISRALLSVSDKDGLVDFARTLAGHGVELLSTGGTARALRDAGLTVTDV 53
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BLAST of mRNA_Ecto-sp13_S_contig96384.21263.1 vs. uniprot
Match: A0A8F6DIS0_9SPHN (Bifunctional purine biosynthesis protein PurH n=1 Tax=Sphingosinicellaceae bacterium TaxID=2836944 RepID=A0A8F6DIS0_9SPHN)

HSP 1 Score: 74.3 bits (181), Expect = 2.840e-14
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 VKVTRALLSVSDKDGLVELATSLASHGVELLSTGGTAKAMRAAGLTVTDV 150
            +K+TRALLSVSDK GLVE+ T+LA HGVELLSTGGTA A+R AGL+VTDV
Sbjct:    5 IKITRALLSVSDKTGLVEIGTALARHGVELLSTGGTAMALRDAGLSVTDV 54
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BLAST of mRNA_Ecto-sp13_S_contig96384.21263.1 vs. uniprot
Match: A0A516V5E1_9GAMM (Bifunctional purine biosynthesis protein PurH n=1 Tax=Lysobacter lycopersici TaxID=1324796 RepID=A0A516V5E1_9GAMM)

HSP 1 Score: 73.6 bits (179), Expect = 5.300e-14
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 VKVTRALLSVSDKDGLVELATSLASHGVELLSTGGTAKAMRAAGLTVTDV 150
            VK+TRALLSVSDK GL++LA +LA+HGVELLSTGGTAKA+R AGL V DV
Sbjct:   11 VKITRALLSVSDKTGLIDLARALAAHGVELLSTGGTAKALRDAGLAVKDV 60
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96384.21263.1 vs. uniprot
Match: A0A0A0EKL8_9GAMM (Bifunctional purine biosynthesis protein PurH n=2 Tax=Lysobacter TaxID=68 RepID=A0A0A0EKL8_9GAMM)

HSP 1 Score: 73.2 bits (178), Expect = 7.240e-14
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 VKVTRALLSVSDKDGLVELATSLASHGVELLSTGGTAKAMRAAGLTVTDV 150
            VK+ RALLSVSDK GL+ELAT+LA HGV+LLSTGGTAKA+R AGL V DV
Sbjct:    6 VKIRRALLSVSDKTGLIELATALAGHGVQLLSTGGTAKAIREAGLAVIDV 55
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96384.21263.1 vs. uniprot
Match: A0A838KZY4_9SPHN (Bifunctional purine biosynthesis protein PurH n=1 Tax=Sphingomonas chungangi TaxID=2683589 RepID=A0A838KZY4_9SPHN)

HSP 1 Score: 73.2 bits (178), Expect = 7.240e-14
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 VKVTRALLSVSDKDGLVELATSLASHGVELLSTGGTAKAMRAAGLTVTDV 150
            VK+TRALLSVSDK GLVEL  +LA HGVELLSTGGTA+A+R AGLTV DV
Sbjct:    4 VKITRALLSVSDKAGLVELGQALARHGVELLSTGGTARALRDAGLTVKDV 53
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BLAST of mRNA_Ecto-sp13_S_contig96384.21263.1 vs. uniprot
Match: A0A1Z5K3V3_FISSO (Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3V3_FISSO)

HSP 1 Score: 72.0 bits (175), Expect = 1.850e-13
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 VKVTRALLSVSDKDGLVELATSLASHGVELLSTGGTAKAMRAAGLTVTDV 150
            VK+TRAL+SVSDK G+V+ AT LAS GVELLSTGGTAKA+R AGLTV DV
Sbjct:   37 VKITRALISVSDKTGIVDFATFLASQGVELLSTGGTAKALRDAGLTVKDV 86
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96384.21263.1 vs. uniprot
Match: A0A7S1UAS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAS9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.420e-13
Identity = 39/50 (78.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 VKVTRALLSVSDKDGLVELATSLASHGVELLSTGGTAKAMRAAGLTVTDV 150
            + V RALLSVSDK GLV  AT LASHGVELLSTGGTAK +R AGLTV DV
Sbjct:   16 IPVRRALLSVSDKTGLVPFATKLASHGVELLSTGGTAKKLREAGLTVIDV 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig96384.21263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1Y5_9PHAE5.820e-20100.00MGS-like domain-containing protein n=2 Tax=Ectocar... [more]
A0A514BWB5_9GAMM8.140e-1582.00Bifunctional purine biosynthesis protein PurH n=1 ... [more]
A0A8F9HV56_9SPHN1.520e-1478.00Bifunctional purine biosynthesis protein PurH n=2 ... [more]
A0A7G5IHR2_9SPHN2.080e-1476.00Bifunctional purine biosynthesis protein PurH n=1 ... [more]
A0A8F6DIS0_9SPHN2.840e-1478.00Bifunctional purine biosynthesis protein PurH n=1 ... [more]
A0A516V5E1_9GAMM5.300e-1478.00Bifunctional purine biosynthesis protein PurH n=1 ... [more]
A0A0A0EKL8_9GAMM7.240e-1478.00Bifunctional purine biosynthesis protein PurH n=2 ... [more]
A0A838KZY4_9SPHN7.240e-1480.00Bifunctional purine biosynthesis protein PurH n=1 ... [more]
A0A1Z5K3V3_FISSO1.850e-1378.00Phosphoribosylaminoimidazolecarboxamide formyltran... [more]
A0A7S1UAS9_9STRA2.420e-1378.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig96384contigEcto-sp13_S_contig96384:102..251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score91.7
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog2880.D8LKS8
Preferred nameATIC
Model size150
KEGG rclassRC00026,RC00263,RC00456
KEGG koko:K00602,ko:K06943
KEGG ReactionR01127,R04560
KEGG Pathwayko00230,ko00670,ko01100,ko01110,ko01130,ko01523,ko03008,map00230,map00670,map01100,map01110,map01130,map01523,map03008
KEGG ModuleM00048
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0003006,GO:0003360,GO:0003674,GO:0003824,GO:0003937,GO:0004643,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006760,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009058,GO:0009060,GO:0009108,GO:0009116,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009235,GO:0009259,GO:0009260,GO:0009396,GO:0009611,GO:0009653,GO:0009987,GO:0010035,GO:0015980,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0016742,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019238,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019953,GO:0021537,GO:0021543,GO:0021549,GO:0021987,GO:0022037,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0030435,GO:0030437,GO:0030900,GO:0030902,GO:0031099,GO:0031100,GO:0032501,GO:0032502,GO:0032505,GO:0033013,GO:0034293,GO:0034641,GO:0034654,GO:0042060,GO:0042221,GO:0042398,GO:0042558,GO:0042559,GO:0042802,GO:0042803,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043934,GO:0043935,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045333,GO:0046040,GO:0046390,GO:0046394,GO:0046452,GO:0046483,GO:0046653,GO:0046654,GO:0046983,GO:0048468,GO:0048513,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051186,GO:0051188,GO:0051321,GO:0051704,GO:0055086,GO:0055114,GO:0060322,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1903046
Exons1
EggNOG free text desc.IMP cyclohydrolase activity
EggNOG OGsCOG0138@1,KOG2555@2759
EC2.1.2.3,3.5.4.10
Cds size150
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464228.2856686-CDS-Ecto-sp13_S_contig96384:101..2511681464228.2856686-CDS-Ecto-sp13_S_contig96384:101..251Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig96384 102..251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig96384.21263.1prot_Ecto-sp13_S_contig96384.21263.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig96384 102..251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig96384.21263.1

>prot_Ecto-sp13_S_contig96384.21263.1 ID=prot_Ecto-sp13_S_contig96384.21263.1|Name=mRNA_Ecto-sp13_S_contig96384.21263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
VKVTRALLSVSDKDGLVELATSLASHGVELLSTGGTAKAMRAAGLTVTDV
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mRNA from alignment at Ecto-sp13_S_contig96384:102..251-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig96384.21263.1 ID=mRNA_Ecto-sp13_S_contig96384.21263.1|Name=mRNA_Ecto-sp13_S_contig96384.21263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96384:102..251- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCAAGGTGACCCGCGCTCTCCTCTCCGTCTCCGACAAGGATGGCCTGGT
GGAGCTAGCGACCTCCCTTGCCTCCCACGGTGTCGAACTCCTCTCCACGG
GGGGTACCGCTAAGGCCATGCGCGCCGCAGGCCTTACGGTCACAGACGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig96384:102..251-

>mRNA_Ecto-sp13_S_contig96384.21263.1 ID=mRNA_Ecto-sp13_S_contig96384.21263.1|Name=mRNA_Ecto-sp13_S_contig96384.21263.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96384:102..251- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCAAGGTGACCCGCGCTCTCCTCTCCGTCTCCGACAAGGATGGCCTGGT
GGAGCTAGCGACCTCCCTTGCCTCCCACGGTGTCGAACTCCTCTCCACGG
GGGGTACCGCTAAGGCCATGCGCGCCGCAGGCCTTACGGTCACAGACGTG
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