mRNA_Ecto-sp13_S_contig96250.21249.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig96250.21249.1
Unique NamemRNA_Ecto-sp13_S_contig96250.21249.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig96250.21249.1 vs. uniprot
Match: D8LMW0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMW0_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.460e-28
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 DSAKTRMQSQAASTDGKPLKYTSTLQTLSHLAKSEGFFSLWKGFTPYFLRSGTHTV 168
            DSAKTRMQSQAASTDGKPLKYTSTLQTLSH+AKSEGFFSLWKGFTPYFLRSGTHTV
Sbjct:  229 DSAKTRMQSQAASTDGKPLKYTSTLQTLSHVAKSEGFFSLWKGFTPYFLRSGTHTV 284
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BLAST of mRNA_Ecto-sp13_S_contig96250.21249.1 vs. uniprot
Match: A0A835Z4J2_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.110e-16
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 DSAKTRMQSQAASTDGKPLKYTSTLQTLSHLAKSEGFFSLWKGFTPYFLRSGTHTV 168
            D+AKTRMQ QA + DG PLKYT  LQT+  +A+ EG  SLWKGFTPYF+RSG HTV
Sbjct:  224 DTAKTRMQGQARARDGAPLKYTGMLQTVGAIAREEGARSLWKGFTPYFVRSGGHTV 279
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BLAST of mRNA_Ecto-sp13_S_contig96250.21249.1 vs. uniprot
Match: UPI000C200C67 (mitochondrial 2-oxoglutarate/malate carrier protein n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C200C67)

HSP 1 Score: 63.9 bits (154), Expect = 1.360e-10
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 DSAKTRMQSQAASTDGKPLKYTSTLQTLSHLAKSEGFFSLWKGFTPYFLRSGTHTV 168
            D AKTR+Q+     DGKP +YT  L  LS + + EGFF+LWKGFTPYFLR G HTV
Sbjct:  233 DIAKTRIQNMKM-IDGKP-EYTGALNVLSRVIQQEGFFALWKGFTPYFLRLGPHTV 286
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BLAST of mRNA_Ecto-sp13_S_contig96250.21249.1 vs. uniprot
Match: A0A6A7FQV7_9CRUS (2-oxoglutarate/malate carrier protein-like (Fragment) n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FQV7_9CRUS)

HSP 1 Score: 62.4 bits (150), Expect = 4.560e-10
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 DSAKTRMQSQAASTDGKPLKYTSTLQTLSHLAKSEGFFSLWKGFTPYFLRSGTHTV 168
            D AKTR+Q+    TDGKP +Y+  +  L  + K EGFFSLWKGFTPY++R G HTV
Sbjct:  214 DIAKTRIQNMKI-TDGKP-EYSGAMDVLGTVIKKEGFFSLWKGFTPYYMRLGPHTV 267
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BLAST of mRNA_Ecto-sp13_S_contig96250.21249.1 vs. uniprot
Match: A0A6G0UWX2_9BILA (Uncharacterized protein n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0UWX2_9BILA)

HSP 1 Score: 62.4 bits (150), Expect = 4.830e-10
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 DSAKTRMQSQAASTDGKPLKYTSTLQTLSHLAKSEGFFSLWKGFTPYFLRSGTHTV 168
            D AKTR+Q+     DGKP +Y   +  LS + K+EGFFSLWKGFTPY++R G HTV
Sbjct:  229 DIAKTRIQNMRI-IDGKP-EYRGAIDVLSRVVKNEGFFSLWKGFTPYYMRLGPHTV 282
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BLAST of mRNA_Ecto-sp13_S_contig96250.21249.1 vs. uniprot
Match: A0A293LD80_ORNER (Uncharacterized protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LD80_ORNER)

HSP 1 Score: 60.1 bits (144), Expect = 4.860e-10
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 DSAKTRMQSQAASTDGKPLKYTSTLQTLSHLAKSEGFFSLWKGFTPYFLRSGTHTV 168
            D AKTR+Q+     DGKP +Y   L  LS + + EGFFSLWKGFTPY+ R G HTV
Sbjct:   56 DIAKTRIQNMRI-IDGKP-EYRGALDVLSQVIRKEGFFSLWKGFTPYYARLGPHTV 109
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BLAST of mRNA_Ecto-sp13_S_contig96250.21249.1 vs. uniprot
Match: T1K0P8_TETUR (Uncharacterized protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1K0P8_TETUR)

HSP 1 Score: 62.4 bits (150), Expect = 4.950e-10
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 DSAKTRMQSQAASTDGKPLKYTSTLQTLSHLAKSEGFFSLWKGFTPYFLRSGTHTV 168
            D AKTR+Q+     DGKP +Y   +  L+ +AK+EGFF+LWKGFTPY+LR G HTV
Sbjct:  234 DIAKTRIQNMKT-IDGKP-EYKGAIDVLAKVAKNEGFFALWKGFTPYYLRLGPHTV 287
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BLAST of mRNA_Ecto-sp13_S_contig96250.21249.1 vs. uniprot
Match: A0A4Z2EFE5_9TELE (Mitochondrial 2-oxoglutarate/malate carrier protein n=2 Tax=Perciformes TaxID=8111 RepID=A0A4Z2EFE5_9TELE)

HSP 1 Score: 59.7 bits (143), Expect = 5.690e-10
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 DSAKTRMQSQAASTDGKPLKYTSTLQTLSHLAKSEGFFSLWKGFTPYFLRSGTHTV 168
            D  KTR+QS     DGKP +Y + L+ L  + K+EGFFSLWKGFTPY+ R G HTV
Sbjct:   54 DIVKTRIQSMRM-IDGKP-EYKNGLEVLLRVVKNEGFFSLWKGFTPYYARLGPHTV 107
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BLAST of mRNA_Ecto-sp13_S_contig96250.21249.1 vs. uniprot
Match: UPI001C70DA24 (mitochondrial 2-oxoglutarate/malate carrier protein-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C70DA24)

HSP 1 Score: 62.0 bits (149), Expect = 7.970e-10
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 DSAKTRMQSQAASTDGKPLKYTSTLQTLSHLAKSEGFFSLWKGFTPYFLRSGTHTV 168
            D AKTR+Q+    TDGKP +Y   L  L  + ++EGFFSLWKGFTPY++R G HTV
Sbjct:  334 DIAKTRIQNMKI-TDGKP-EYKGALDVLGKVIRNEGFFSLWKGFTPYYMRLGPHTV 387
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BLAST of mRNA_Ecto-sp13_S_contig96250.21249.1 vs. uniprot
Match: UPI000C759AFC (LOW QUALITY PROTEIN: mitochondrial 2-oxoglutarate/malate carrier protein-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C759AFC)

HSP 1 Score: 61.6 bits (148), Expect = 8.480e-10
Identity = 33/56 (58.93%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 DSAKTRMQSQAASTDGKPLKYTSTLQTLSHLAKSEGFFSLWKGFTPYFLRSGTHTV 168
            D AKTR+QS     DGKP +Y   +  LS + K EGFFSLWKGFTPY+ R G HTV
Sbjct:  210 DIAKTRLQSMKY-IDGKP-EYKGAVDVLSKVVKQEGFFSLWKGFTPYYFRLGPHTV 263
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig96250.21249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMW0_ECTSI1.460e-2898.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z4J2_9STRA7.110e-1667.86Mitochondrial carrier domain-containing protein n=... [more]
UPI000C200C671.360e-1060.71mitochondrial 2-oxoglutarate/malate carrier protei... [more]
A0A6A7FQV7_9CRUS4.560e-1057.142-oxoglutarate/malate carrier protein-like (Fragme... [more]
A0A6G0UWX2_9BILA4.830e-1057.14Uncharacterized protein n=1 Tax=Halicephalobus sp.... [more]
A0A293LD80_ORNER4.860e-1057.14Uncharacterized protein (Fragment) n=1 Tax=Ornitho... [more]
T1K0P8_TETUR4.950e-1057.14Uncharacterized protein n=1 Tax=Tetranychus urtica... [more]
A0A4Z2EFE5_9TELE5.690e-1057.14Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
UPI001C70DA247.970e-1057.14mitochondrial 2-oxoglutarate/malate carrier protei... [more]
UPI000C759AFC8.480e-1058.93LOW QUALITY PROTEIN: mitochondrial 2-oxoglutarate/... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig96250contigEcto-sp13_S_contig96250:305..472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score102.1
Seed ortholog evalue7.9e-20
Seed eggNOG ortholog2880.D8LMW0
Model size168
KEGG koko:K15104
KEGG TC2.A.29.2.1,2.A.29.2.9
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.thiosulfate transmembrane transporter activity
EggNOG OGsKOG0759@1,KOG0759@2759
Cds size150
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464227.4133542-UTR-Ecto-sp13_S_contig96250:304..3221681464227.4133542-UTR-Ecto-sp13_S_contig96250:304..322Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig96250 305..322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464227.4312615-CDS-Ecto-sp13_S_contig96250:322..4721681464227.4312615-CDS-Ecto-sp13_S_contig96250:322..472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig96250 323..472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig96250.21249.1prot_Ecto-sp13_S_contig96250.21249.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig96250 323..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig96250.21249.1

>prot_Ecto-sp13_S_contig96250.21249.1 ID=prot_Ecto-sp13_S_contig96250.21249.1|Name=mRNA_Ecto-sp13_S_contig96250.21249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
MQSQAASTDGKPLKYTSTLQTLSHLAKSEGFFSLWKGFTPYFLRSGTHTV
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mRNA from alignment at Ecto-sp13_S_contig96250:305..472+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig96250.21249.1 ID=mRNA_Ecto-sp13_S_contig96250.21249.1|Name=mRNA_Ecto-sp13_S_contig96250.21249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96250:305..472+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTCGGCTAAGACCCGGATGCAGAGCCAGGCGGCGAGCACGGACGGGAA
GCCGCTCAAGTACACGTCGACGCTGCAGACCTTGTCCCACCTCGCCAAGT
CGGAAGGATTCTTCAGCCTCTGGAAGGGCTTCACCCCGTACTTCTTACGC
TCGGGCACGCACACGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig96250:305..472+

>mRNA_Ecto-sp13_S_contig96250.21249.1 ID=mRNA_Ecto-sp13_S_contig96250.21249.1|Name=mRNA_Ecto-sp13_S_contig96250.21249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96250:305..472+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAGCCAGGCGGCGAGCACGGACGGGAAGCCGCTCAAGTACACGTC
GACGCTGCAGACCTTGTCCCACCTCGCCAAGTCGGAAGGATTCTTCAGCC
TCTGGAAGGGCTTCACCCCGTACTTCTTACGCTCGGGCACGCACACGGTG
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