mRNA_Ecto-sp13_S_contig9625.21248.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9625.21248.1
Unique NamemRNA_Ecto-sp13_S_contig9625.21248.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9625.21248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9625contigEcto-sp13_S_contig9625:5334..5559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_004430.1
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464227.3528762-CDS-Ecto-sp13_S_contig9625:5333..54221681464227.3528762-CDS-Ecto-sp13_S_contig9625:5333..5422Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9625 5334..5422 -
1681464227.3692434-CDS-Ecto-sp13_S_contig9625:5489..55591681464227.3692434-CDS-Ecto-sp13_S_contig9625:5489..5559Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9625 5490..5559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9625.21248.1prot_Ecto-sp13_S_contig9625.21248.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9625 5334..5559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9625.21248.1

>prot_Ecto-sp13_S_contig9625.21248.1 ID=prot_Ecto-sp13_S_contig9625.21248.1|Name=mRNA_Ecto-sp13_S_contig9625.21248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
MVKQRFGLVVLPGAKKSDFNKLLTDTRCRRTPRCYCCPSAIFARHDEIVV
VR*
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mRNA from alignment at Ecto-sp13_S_contig9625:5334..5559-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9625.21248.1 ID=mRNA_Ecto-sp13_S_contig9625.21248.1|Name=mRNA_Ecto-sp13_S_contig9625.21248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=226bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9625:5334..5559- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCAAGCAGCGATTCGGCCTGGTCGTACTGCCGGGGGCCAAAAAGTC
CGACTTCAACAAGCTCCTGAGTGTATTCCCTACCTCCTGCCTCCCGTTCT
GTCGTAATTTTGGGTTGTGCGCCCGGTACTGCTGCAGCTGACACACGCTG
CCGCCGTACTCCCCGGTGCTACTGTTGTCCTAGCGCGATATTCGCGAGGC
ATGACGAAATCGTAGTTGTGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9625:5334..5559-

>mRNA_Ecto-sp13_S_contig9625.21248.1 ID=mRNA_Ecto-sp13_S_contig9625.21248.1|Name=mRNA_Ecto-sp13_S_contig9625.21248.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9625:5334..5559- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCAAGCAGCGATTCGGCCTGGTCGTACTGCCGGGGGCCAAAAAGTC
CGACTTCAACAAGCTCCTGACTGACACACGCTGCCGCCGTACTCCCCGGT
GCTACTGTTGTCCTAGCGCGATATTCGCGAGGCATGACGAAATCGTAGTT
GTGAGGTGA
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