mRNA_Ecto-sp13_S_contig96221.21247.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig96221.21247.1
Unique NamemRNA_Ecto-sp13_S_contig96221.21247.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig96221.21247.1 vs. uniprot
Match: A0A6H5K5Q1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q1_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 3.990e-39
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    4 QTDEIYLNLVLEFVPETVYSVARQYHKSKQTLPILLVKLYLYQLARALAHIHALGICHRDIKPQNLLLDPQ 216
            +TDEIYLNLVLEFVPETVYSVARQYHKSKQTLP+LLVKLYLYQLARALAHIHALGICHRDIKPQNLLLDPQ
Sbjct:  137 KTDEIYLNLVLEFVPETVYSVARQYHKSKQTLPVLLVKLYLYQLARALAHIHALGICHRDIKPQNLLLDPQ 207
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96221.21247.1 vs. uniprot
Match: D7FW20_ECTSI (Glycogen synthase kinase-3 beta (GSK-3 beta) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW20_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 3.410e-38
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    4 QTDEIYLNLVLEFVPETVYSVARQYHKSKQTLPILLVKLYLYQLARALAHIHALGICHRDIKPQNLLLDPQ 216
            +TDEIYLNLVLEFVPETVYSVARQYHKSKQTLP+LLVKLYLYQLARALAHIHALGICHRDIKPQNLLLDPQ
Sbjct:  217 KTDEIYLNLVLEFVPETVYSVARQYHKSKQTLPVLLVKLYLYQLARALAHIHALGICHRDIKPQNLLLDPQ 287
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BLAST of mRNA_Ecto-sp13_S_contig96221.21247.1 vs. uniprot
Match: A0A7S4D9J3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9J3_HETAK)

HSP 1 Score: 127 bits (318), Expect = 1.610e-33
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:   10 DEIYLNLVLEFVPETVYSVARQYHKSKQTLPILLVKLYLYQLARALAHIHALGICHRDIKPQNLLLDPQ 216
            DE+YLNLVLEF+PETVYSVARQY KSKQTLP+L VKLYLYQL R+LAH+HA G+CHRDIKPQNLLLDPQ
Sbjct:  117 DELYLNLVLEFIPETVYSVARQYQKSKQTLPVLFVKLYLYQLCRSLAHLHAAGVCHRDIKPQNLLLDPQ 185
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BLAST of mRNA_Ecto-sp13_S_contig96221.21247.1 vs. uniprot
Match: A0A835Z4L4_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4L4_9STRA)

HSP 1 Score: 126 bits (316), Expect = 9.180e-33
Identity = 60/68 (88.24%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:   10 DEIYLNLVLEFVPETVYSVARQYHKSKQTLPILLVKLYLYQLARALAHIHALGICHRDIKPQNLLLDP 213
            D++YLNLVLEF+PETVYSVARQY KSKQ LP++LV+LYLYQLARALAHIHALGICHRDIKPQNLLLDP
Sbjct:  181 DDVYLNLVLEFIPETVYSVARQYQKSKQPLPMVLVRLYLYQLARALAHIHALGICHRDIKPQNLLLDP 248
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96221.21247.1 vs. uniprot
Match: A0A2P8Y1Q7_BLAGE (Protein kinase shaggy n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8Y1Q7_BLAGE)

HSP 1 Score: 117 bits (294), Expect = 9.660e-32
Identity = 54/71 (76.06%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    4 QTDEIYLNLVLEFVPETVYSVARQYHKSKQTLPILLVKLYLYQLARALAHIHALGICHRDIKPQNLLLDPQ 216
            Q DE+YLNLVLE++PETVY VAR Y KSKQT+PI  +KLY+YQL R+LA+IH+LGICHRDIKPQNLLLDP+
Sbjct:   11 QKDEVYLNLVLEYIPETVYKVARHYSKSKQTIPISFIKLYMYQLFRSLAYIHSLGICHRDIKPQNLLLDPE 81
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96221.21247.1 vs. uniprot
Match: UPI000719BC3D (glycogen synthase kinase-3 beta-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719BC3D)

HSP 1 Score: 118 bits (296), Expect = 2.460e-31
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 1 
Query:   10 DEIYLNLVLEFVPETVYSVARQYHKSKQTLPILLVKLYLYQLARALAHIHALGICHRDIKPQNLLLDPQ 216
            DE+YLNLVLE+VPETVY VAR Y K+KQT+PIL +KLYLYQL R+LA+IHALGICHRDIKPQNLLLDP+
Sbjct:  124 DEVYLNLVLEYVPETVYRVARHYSKTKQTVPILYIKLYLYQLFRSLAYIHALGICHRDIKPQNLLLDPE 192
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BLAST of mRNA_Ecto-sp13_S_contig96221.21247.1 vs. uniprot
Match: A0A2G8K9T6_STIJA (Glycogen synthase kinase-3 beta isoform 1 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8K9T6_STIJA)

HSP 1 Score: 120 bits (300), Expect = 4.070e-31
Identity = 56/69 (81.16%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:   10 DEIYLNLVLEFVPETVYSVARQYHKSKQTLPILLVKLYLYQLARALAHIHALGICHRDIKPQNLLLDPQ 216
            DE+YLNLVLEF+PETVY VAR Y+KSKQT+PIL VKLY+YQL R+LA+IH+LGICHRDIKPQNLLLDP+
Sbjct:   97 DEVYLNLVLEFIPETVYRVARHYNKSKQTIPILYVKLYMYQLFRSLAYIHSLGICHRDIKPQNLLLDPE 165
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96221.21247.1 vs. uniprot
Match: A0A023FFC4_AMBCJ (Putative glycogen synthase kinase-3 (Fragment) n=1 Tax=Amblyomma cajennense TaxID=34607 RepID=A0A023FFC4_AMBCJ)

HSP 1 Score: 115 bits (289), Expect = 5.650e-31
Identity = 53/69 (76.81%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:   10 DEIYLNLVLEFVPETVYSVARQYHKSKQTLPILLVKLYLYQLARALAHIHALGICHRDIKPQNLLLDPQ 216
            DE+YLNLVLE++PETVY VAR Y KSKQT+PI  +KLY+YQL R+LA+IH+LGICHRDIKPQNLLLDP+
Sbjct:   67 DEVYLNLVLEYIPETVYRVARHYSKSKQTIPISFIKLYMYQLFRSLAYIHSLGICHRDIKPQNLLLDPE 135
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96221.21247.1 vs. uniprot
Match: A0A183IUW6_9BILA (Protein kinase domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IUW6_9BILA)

HSP 1 Score: 115 bits (289), Expect = 7.710e-31
Identity = 52/71 (73.24%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    4 QTDEIYLNLVLEFVPETVYSVARQYHKSKQTLPILLVKLYLYQLARALAHIHALGICHRDIKPQNLLLDPQ 216
            Q DE++LNL+LE++PETVY VAR Y KSKQ +P+L +KLY+YQL RALA+IH+LGICHRDIKPQNLLLDP+
Sbjct:   25 QADEVFLNLILEYIPETVYRVARHYSKSKQPIPLLYIKLYMYQLFRALAYIHSLGICHRDIKPQNLLLDPE 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96221.21247.1 vs. uniprot
Match: A0A822BM34_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A822BM34_9BILA)

HSP 1 Score: 114 bits (284), Expect = 8.930e-31
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:   10 DEIYLNLVLEFVPETVYSVARQYHKSKQTLPILLVKLYLYQLARALAHIHALGICHRDIKPQNLLLDPQ 216
            +E+YLNLVLE+VPETVY VAR Y K KQT+P+L VKLY+YQL RALA+IH+ GICHRDIKPQNLLLDP+
Sbjct:   25 EEVYLNLVLEYVPETVYRVARHYTKQKQTIPLLYVKLYMYQLFRALAYIHSFGICHRDIKPQNLLLDPE 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig96221.21247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5Q1_9PHAE3.990e-3997.18Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FW20_ECTSI3.410e-3897.18Glycogen synthase kinase-3 beta (GSK-3 beta) n=1 T... [more]
A0A7S4D9J3_HETAK1.610e-3385.51Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835Z4L4_9STRA9.180e-3388.24Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A2P8Y1Q7_BLAGE9.660e-3276.06Protein kinase shaggy n=1 Tax=Blattella germanica ... [more]
UPI000719BC3D2.460e-3181.16glycogen synthase kinase-3 beta-like n=1 Tax=Priap... [more]
A0A2G8K9T6_STIJA4.070e-3181.16Glycogen synthase kinase-3 beta isoform 1 n=1 Tax=... [more]
A0A023FFC4_AMBCJ5.650e-3176.81Putative glycogen synthase kinase-3 (Fragment) n=1... [more]
A0A183IUW6_9BILA7.710e-3173.24Protein kinase domain-containing protein n=1 Tax=S... [more]
A0A822BM34_9BILA8.930e-3176.81Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig96221contigEcto-sp13_S_contig96221:310..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score139.4
Seed ortholog evalue6.5e-31
Seed eggNOG ortholog2880.D7FW20
Model size216
KEGG koko:K03083
KEGG Pathwayko01521,ko04012,ko04062,ko04110,ko04150,ko04151,ko04310,ko04340,ko04341,ko04360,ko04390,ko04510,ko04550,ko04657,ko04660,ko04662,ko04711,ko04722,ko04728,ko04910,ko04916,ko04917,ko04919,ko04931,ko04932,ko04934,ko05010,ko05160,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05210,ko05213,ko05215,ko05217,ko05224,ko05225,ko05226,map01521,map04012,map04062,map04110,map04150,map04151,map04310,map04340,map04341,map04360,map04390,map04510,map04550,map04657,map04660,map04662,map04711,map04722,map04728,map04910,map04916,map04917,map04919,map04931,map04932,map04934,map05010,map05160,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05210,map05213,map05215,map05217,map05224,map05225,map05226
KEGG ModuleM00677
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0658@2759
EC2.7.11.26
Cds size216
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464227.317193-CDS-Ecto-sp13_S_contig96221:309..5251681464227.317193-CDS-Ecto-sp13_S_contig96221:309..525Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig96221 310..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig96221.21247.1prot_Ecto-sp13_S_contig96221.21247.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig96221 310..525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig96221.21247.1

>prot_Ecto-sp13_S_contig96221.21247.1 ID=prot_Ecto-sp13_S_contig96221.21247.1|Name=mRNA_Ecto-sp13_S_contig96221.21247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
LQTDEIYLNLVLEFVPETVYSVARQYHKSKQTLPILLVKLYLYQLARALA
HIHALGICHRDIKPQNLLLDPQ
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mRNA from alignment at Ecto-sp13_S_contig96221:310..525-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig96221.21247.1 ID=mRNA_Ecto-sp13_S_contig96221.21247.1|Name=mRNA_Ecto-sp13_S_contig96221.21247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96221:310..525- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCAGACGGACGAGATTTACCTGAACCTGGTCCTGGAGTTCGTGCCGGA
GACGGTGTACAGCGTGGCGAGGCAGTACCACAAGAGCAAGCAGACGCTGC
CGATACTCCTCGTGAAGCTCTACCTCTACCAGCTGGCCAGGGCCCTCGCG
CACATCCACGCCCTCGGGATCTGCCATCGCGACATCAAGCCGCAGAATCT
GCTGCTCGATCCGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig96221:310..525-

>mRNA_Ecto-sp13_S_contig96221.21247.1 ID=mRNA_Ecto-sp13_S_contig96221.21247.1|Name=mRNA_Ecto-sp13_S_contig96221.21247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96221:310..525- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCAGACGGACGAGATTTACCTGAACCTGGTCCTGGAGTTCGTGCCGGA
GACGGTGTACAGCGTGGCGAGGCAGTACCACAAGAGCAAGCAGACGCTGC
CGATACTCCTCGTGAAGCTCTACCTCTACCAGCTGGCCAGGGCCCTCGCG
CACATCCACGCCCTCGGGATCTGCCATCGCGACATCAAGCCGCAGAATCT
GCTGCTCGATCCGCAG
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