mRNA_Ecto-sp13_S_contig96155.21236.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig96155.21236.1
Unique NamemRNA_Ecto-sp13_S_contig96155.21236.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96155.21236.1 vs. uniprot
Match: D7FL32_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL32_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.260e-18
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 GQEEECNCYGAGAEGECCRTCEDVRKAYRRKGWRLNP 111
            GQE+ECNCYGAGAEGECCRTCEDVRKAYRRKGWRLNP
Sbjct:  198 GQEDECNCYGAGAEGECCRTCEDVRKAYRRKGWRLNP 234
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96155.21236.1 vs. uniprot
Match: A0A7S2US83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US83_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.490e-8
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   10 EEC-NCYGAGAEGECCRTCEDVRKAYRRKGWRLNP 111
            EEC +CYGAG EGECC TC+DV+ AY+R+GW   P
Sbjct:    2 EECGDCYGAGNEGECCNTCDDVKLAYKRRGWAFMP 36
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96155.21236.1 vs. uniprot
Match: B7FPS4_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPS4_PHATC)

HSP 1 Score: 56.2 bits (134), Expect = 3.790e-8
Identity = 20/29 (68.97%), Postives = 27/29 (93.10%), Query Frame = 1 
Query:   19 NCYGAGAEGECCRTCEDVRKAYRRKGWRL 105
            +CYGAG EGECC++CEDV++AY+R+GW L
Sbjct:  165 DCYGAGEEGECCKSCEDVKRAYKRRGWSL 193
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96155.21236.1 vs. uniprot
Match: B8C292_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C292_THAPS)

HSP 1 Score: 55.8 bits (133), Expect = 5.180e-8
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    7 EEEC-NCYGAGAEGECCRTCEDVRKAYRRKGWRL 105
            EEEC +CYGAG EGECC TC+DV++AYR K W +
Sbjct:  139 EEECGSCYGAGGEGECCNTCDDVKRAYRTKQWHI 172
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96155.21236.1 vs. uniprot
Match: A0A7S1UUT3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UUT3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.260e-8
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   10 EEC-NCYGAGAEGECCRTCEDVRKAYRRKGWRL 105
            EEC +C+GAG EGECC TC+DV++AY+RKGW L
Sbjct:  162 EECGSCFGAGEEGECCDTCDDVKRAYKRKGWVL 194
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96155.21236.1 vs. uniprot
Match: A0A7S2SEE8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SEE8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.080e-8
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    7 EEEC-NCYGAGAEGECCRTCEDVRKAYRRKGWRLN 108
            EEEC +CYGAG EGECC TC+DV++ Y+ KGW  N
Sbjct:  151 EEECGSCYGAGDEGECCNTCDDVKRVYQGKGWLFN 185
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96155.21236.1 vs. uniprot
Match: A0A7R9U337_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U337_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.090e-8
Identity = 20/31 (64.52%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:   19 NCYGAGAEGECCRTCEDVRKAYRRKGWRLNP 111
            +CYGAG EG+CC TC+DVR AY+R+GW  +P
Sbjct:  167 DCYGAGEEGQCCNTCDDVRLAYQRRGWSFDP 197
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96155.21236.1 vs. uniprot
Match: A0A7S4IKK9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IKK9_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 9.700e-8
Identity = 21/35 (60.00%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    7 EEEC-NCYGAGAEGECCRTCEDVRKAYRRKGWRLN 108
            E+EC +CYGAG EGECC TC+DV++AY+R+ W ++
Sbjct:  191 EDECGDCYGAGEEGECCNTCDDVKRAYQRRSWHID 225
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96155.21236.1 vs. uniprot
Match: A0A1Z5JLU5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLU5_FISSO)

HSP 1 Score: 54.3 bits (129), Expect = 1.810e-7
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   19 NCYGAGAEGECCRTCEDVRKAYRRKGWRL 105
            +CYGAG E ECC TCED+++AY+RKGW L
Sbjct:  164 SCYGAGDEDECCNTCEDIQRAYKRKGWAL 192
[Close]
BLAST of mRNA_Ecto-sp13_S_contig96155.21236.1 vs. uniprot
Match: A0A640KUU7_LEITA (Uncharacterized protein n=1 Tax=Leishmania tarentolae TaxID=5689 RepID=A0A640KUU7_LEITA)

HSP 1 Score: 54.3 bits (129), Expect = 1.810e-7
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   19 NCYGAG-AEGECCRTCEDVRKAYRRKGWRLN 108
            +CYGAG A GECC TCEDVR+AY RKGW+L+
Sbjct:  146 SCYGAGRAPGECCHTCEDVRQAYARKGWKLD 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig96155.21236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL32_ECTSI2.260e-1897.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2US83_9STRA2.490e-865.71Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
B7FPS4_PHATC3.790e-868.97Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
B8C292_THAPS5.180e-867.65Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1UUT3_9STRA5.260e-869.70Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S2SEE8_9STRA7.080e-865.71Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7R9U337_9STRA7.090e-864.52Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4IKK9_9STRA9.700e-860.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Z5JLU5_FISSO1.810e-768.97Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A640KUU7_LEITA1.810e-774.19Uncharacterized protein n=1 Tax=Leishmania tarento... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig96155contigEcto-sp13_S_contig96155:356..466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score87.0
Seed ortholog evalue2e-15
Seed eggNOG ortholog2880.D7FL32
Preferred nameERGIC3
Model size111
KEGG rclassRC00002,RC00078
KEGG koko:K00889,ko:K20365,ko:K20367
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016192,GO:0030134,GO:0030135,GO:0030173,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0033036,GO:0034613,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098827
Exons1
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG0445@1,KOG2667@2759
EC2.7.1.68
Cds size111
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464226.6588843-CDS-Ecto-sp13_S_contig96155:355..4661681464226.6588843-CDS-Ecto-sp13_S_contig96155:355..466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig96155 356..466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig96155.21236.1prot_Ecto-sp13_S_contig96155.21236.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig96155 356..466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig96155.21236.1

>prot_Ecto-sp13_S_contig96155.21236.1 ID=prot_Ecto-sp13_S_contig96155.21236.1|Name=mRNA_Ecto-sp13_S_contig96155.21236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
GQEEECNCYGAGAEGECCRTCEDVRKAYRRKGWRLNP
back to top

mRNA from alignment at Ecto-sp13_S_contig96155:356..466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig96155.21236.1 ID=mRNA_Ecto-sp13_S_contig96155.21236.1|Name=mRNA_Ecto-sp13_S_contig96155.21236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96155:356..466- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCAAGAGGAGGAGTGCAACTGCTACGGCGCCGGGGCGGAGGGGGAGTG
CTGCCGGACTTGCGAGGACGTGCGAAAGGCCTATCGCCGGAAGGGCTGGA
GGCTTAACCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig96155:356..466-

>mRNA_Ecto-sp13_S_contig96155.21236.1 ID=mRNA_Ecto-sp13_S_contig96155.21236.1|Name=mRNA_Ecto-sp13_S_contig96155.21236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96155:356..466- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCAAGAGGAGGAGTGCAACTGCTACGGCGCCGGGGCGGAGGGGGAGTG
CTGCCGGACTTGCGAGGACGTGCGAAAGGCCTATCGCCGGAAGGGCTGGA
GGCTTAACCCC
back to top