mRNA_Ecto-sp13_S_contig9601.21220.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9601.21220.1
Unique NamemRNA_Ecto-sp13_S_contig9601.21220.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9601.21220.1 vs. uniprot
Match: D7FN89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN89_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.820e-7
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:  106 MKQESECSALSAIWSERSSRHSRT*WWR---SMKRKTLPEYTSAGATYGVQIG 255
            M+QESECSA SAI SERSSRH ++         +     EYTSAGATYG+QIG
Sbjct:    1 MEQESECSASSAIRSERSSRHFQSVTQEVDEEEEEDAAGEYTSAGATYGIQIG 53
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9601.21220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FN89_ECTSI1.820e-758.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9601contigEcto-sp13_S_contig9601:169..1955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size255
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003400.1
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464225.5308626-UTR-Ecto-sp13_S_contig9601:168..2431681464225.5308626-UTR-Ecto-sp13_S_contig9601:168..243Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9601 169..243 -
1681464225.5678754-UTR-Ecto-sp13_S_contig9601:1925..19551681464225.5678754-UTR-Ecto-sp13_S_contig9601:1925..1955Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9601 1926..1955 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464225.5429122-CDS-Ecto-sp13_S_contig9601:243..2771681464225.5429122-CDS-Ecto-sp13_S_contig9601:243..277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9601 244..277 -
1681464225.5541575-CDS-Ecto-sp13_S_contig9601:1809..19251681464225.5541575-CDS-Ecto-sp13_S_contig9601:1809..1925Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9601 1810..1925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9601.21220.1prot_Ecto-sp13_S_contig9601.21220.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9601 244..1925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9601.21220.1

>prot_Ecto-sp13_S_contig9601.21220.1 ID=prot_Ecto-sp13_S_contig9601.21220.1|Name=mRNA_Ecto-sp13_S_contig9601.21220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
MAMPNTATKAVESLPQVSDRFGRNHMKQESECSALSAIWSERSSRHSRT*
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mRNA from alignment at Ecto-sp13_S_contig9601:169..1955-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9601.21220.1 ID=mRNA_Ecto-sp13_S_contig9601.21220.1|Name=mRNA_Ecto-sp13_S_contig9601.21220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1787bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9601:169..1955- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCAGCATCTTCGCCAGGCTCGCCAACAAATGGCAATGCCAAATACGGC
GACGAAGGCGGTGGAGTCCCTCCCACAGGTGTCTGATCGTTTCGGACGAA
ATCATATGAAGCAAGAGTCTGAGTGCAGCGCGCTTTCCGCAATCTGGTGA
GGGAAGAGGCGGGCAGGCCCTTTGACTGCGCTGGGCATGGAAAAATCATG
GCAGCTGTGTTACAAAATAGCACTCTTCTGTAAATTGCTTTGGACAGACA
CATGTTGTGTTTTTCTCAAAGTCCGAGATTTTTTTTGACCTAGTACGTTT
GTTGCCCCGCGCCACCATCACCATGGCGTCGGCCAGGGACGTGTCCGGCA
GGACATTAAAACCACGCTACATGTATGTACACCATCCTCGCAAATACAGC
CTCAACCAGTCGCCCGATGTCTGCGCTGGCCTGCGCTGACTTCCCTGTGG
ATATGTCAGGCAGCTGCCAATCATCGTGACCCAGAGGTGACGGTACTGTG
TGGTACCGTGCTGAATTCAACGAGGTTTCTGTGTGTGGCGAATAGGTATA
TCAAGAGAGAACCAGGTAGGTGGTGTAGTTCGCTCAAACCCAGAAAAAAA
GCGTCCGGATGTAGGCTATTGGTGTCATCTGCTTCATTTATTTGATGCCC
CGAGTACATGGACCAGCGAACAACGAGACAGAGTCTCACTCGAACAGCAG
TAGCGACCAACCTCGTGCCATGAAGCAACCCTGACGAAGCGAAGAATTTC
GTACTGCTTTCAAACAAGTCCCACGTGTGCAATGTCAGCCTCGTTCAAAA
GAACGATCAACCTCCTCACGGGCAGAGCTAGTTATCGTGGAGCACCAGTG
TTTTGCGTGTACCGTAATGACAAGGGGGCAACCGTCATATGTGCGCGGCA
GTCCTACGGTAGGAACACTACGAACAAGGATCCCAAGACGTCCGCGTTTT
ATCTTGATGTTCTGGTATTTGTATACGTAGCTAGATCCTGGCCTGTTTTC
TCTCTTTTGGGACTCTTGCCTCGCTCCCTTCGATGTTTGGTACGCTCAAA
GGTACCGTGCTTTCTTCGGCGCGTTTGGCGTTTGTCCTTTTCAATACGGT
GTATAGTTGACGGATGTTGTCTTCTTTAGACAGCGCGTGCGGTCGCTGCT
CAAATGCTGTGGCACTATCACAACCAAATGGTGGTTTTCTGCCAACATTT
GTACTGTAACACCTTGGTGAGTATGGTGGAATGCAGGATGCATCTACGCT
TGAATATCATTGTTAACACCCATCTCACCCATACGACACCAAATTGGAAG
CCGCTGCTTGCGCATGGAGGGTTTGACAACGAGGACCTGCTCGTGCTTCG
TTTGTAGAAATAGCAACGGATGCCGAGAGAGACAGAGAGGGAGAGACAGA
GATAGACAGACAGACAGACAGCTCACAGACAGAGACAGAGACAGAGACGC
GGCTTGTGAATGTATTGCAGGACGTTGAGCGGGCCCGAGCGCCTGGCGGT
GTCTGTCTAGTAATTGCACGGGCCCGGATATGATAGGAACGCTGGGTCAA
TGATCAAGAAAATGATAAAAAATATGACAAGCAGAAGGTAACCCTTGTTA
GCATTCATAGTTGCTTTGAGACGTTTAACGTGATGATGACGCTTGCCACC
CCCCCACTTTCCCCTCTGTTGTCCATAGGTCGGAACGGTCTTCGAGGCAT
TCCAGGACGTGATGGTGGAGGTCGATGAAGAGGAAGACGCTGCCGGAGTA
CACGAGCGCAGGAGCGACCTACGGCGTTCAGATCGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9601:169..1955-

>mRNA_Ecto-sp13_S_contig9601.21220.1 ID=mRNA_Ecto-sp13_S_contig9601.21220.1|Name=mRNA_Ecto-sp13_S_contig9601.21220.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9601:169..1955- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAATGCCAAATACGGCGACGAAGGCGGTGGAGTCCCTCCCACAGGT
GTCTGATCGTTTCGGACGAAATCATATGAAGCAAGAGTCTGAGTGCAGCG
CGCTTTCCGCAATCTGGTCGGAACGGTCTTCGAGGCATTCCAGGACGTGA
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