mRNA_Ecto-sp13_S_contig95965.21208.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig95965.21208.1
Unique NamemRNA_Ecto-sp13_S_contig95965.21208.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig95965.21208.1 vs. uniprot
Match: D7G4W6_ECTSI (Acireductone dioxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4W6_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 7.800e-24
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:   10 GSGYFDVRAKDERWVRIKMSKGDMITLPAGIYHRFTLDDTNYIKVRDAWSG 162
            GSGYFDVRAKDERWVRIKMSKGDMITLPAGIYHRFTLDDTNYIK    + G
Sbjct:  103 GSGYFDVRAKDERWVRIKMSKGDMITLPAGIYHRFTLDDTNYIKAMRLFVG 153
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BLAST of mRNA_Ecto-sp13_S_contig95965.21208.1 vs. uniprot
Match: A0A7K5Z3X7_9AVES (MTND dioxygenase (Fragment) n=2 Tax=Pterocles TaxID=56296 RepID=A0A7K5Z3X7_9AVES)

HSP 1 Score: 85.5 bits (210), Expect = 6.100e-20
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   10 GSGYFDVRAKDERWVRIKMSKGDMITLPAGIYHRFTLDDTNYIKVRDAWSG 162
            GSGYFDVR KD+RW+RI M KGDMITLPAGIYHRFTLD+ NY+K    + G
Sbjct:   62 GSGYFDVRDKDDRWIRISMEKGDMITLPAGIYHRFTLDENNYVKAMRLFVG 112
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BLAST of mRNA_Ecto-sp13_S_contig95965.21208.1 vs. uniprot
Match: A0A091DJJ7_FUKDA (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase n=3 Tax=Fukomys damarensis TaxID=885580 RepID=A0A091DJJ7_FUKDA)

HSP 1 Score: 84.7 bits (208), Expect = 6.390e-20
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   10 GSGYFDVRAKDERWVRIKMSKGDMITLPAGIYHRFTLDDTNYIKVRDAWSG 162
            GSGYFD+R KD+RW+RI M KGDMITLPAGIYHRFTLD+ NY+K    + G
Sbjct:   38 GSGYFDIRDKDDRWIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVG 88
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BLAST of mRNA_Ecto-sp13_S_contig95965.21208.1 vs. uniprot
Match: A0A8C5QK59_9ANUR (Acireductone dioxygenase n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5QK59_9ANUR)

HSP 1 Score: 86.3 bits (212), Expect = 7.630e-20
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   10 GSGYFDVRAKDERWVRIKMSKGDMITLPAGIYHRFTLDDTNYIKVRDAWSG 162
            GSGYFDVR KDERW+RI M KGD+ITLPAGIYHRFTLD+ NY+K    + G
Sbjct:  101 GSGYFDVRGKDERWIRISMQKGDLITLPAGIYHRFTLDENNYVKAMRLFVG 151
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BLAST of mRNA_Ecto-sp13_S_contig95965.21208.1 vs. uniprot
Match: A0A8J6FVN1_ELECQ (Uncharacterized protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6FVN1_ELECQ)

HSP 1 Score: 84.3 bits (207), Expect = 7.730e-20
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   10 GSGYFDVRAKDERWVRIKMSKGDMITLPAGIYHRFTLDDTNYIKVRDAWSG 162
            GSGYFDVR K ERW+RI M KGDMITLPAGIYHRFTLD+ NYIK    + G
Sbjct:   32 GSGYFDVRDKQERWIRISMEKGDMITLPAGIYHRFTLDEKNYIKAMRLFVG 82
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BLAST of mRNA_Ecto-sp13_S_contig95965.21208.1 vs. uniprot
Match: UPI00052990FC (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase n=2 Tax=Neognathae TaxID=8825 RepID=UPI00052990FC)

HSP 1 Score: 84.3 bits (207), Expect = 9.310e-20
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   10 GSGYFDVRAKDERWVRIKMSKGDMITLPAGIYHRFTLDDTNYIKVRDAWSG 162
            GSGYFDVR KD++W+RI M KGDMITLPAGIYHRFTLD+ NY+K    + G
Sbjct:   38 GSGYFDVRDKDDKWIRISMEKGDMITLPAGIYHRFTLDENNYVKAMRLFVG 88
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BLAST of mRNA_Ecto-sp13_S_contig95965.21208.1 vs. uniprot
Match: UPI00163C3210 (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase n=1 Tax=Egretta garzetta TaxID=188379 RepID=UPI00163C3210)

HSP 1 Score: 84.3 bits (207), Expect = 9.310e-20
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   10 GSGYFDVRAKDERWVRIKMSKGDMITLPAGIYHRFTLDDTNYIKVRDAWSG 162
            GSGYFDVR KD++W+RI M KGDMITLPAGIYHRFTLD+ NY+K    + G
Sbjct:   38 GSGYFDVRDKDDKWIRISMEKGDMITLPAGIYHRFTLDENNYVKAMRLFVG 88
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BLAST of mRNA_Ecto-sp13_S_contig95965.21208.1 vs. uniprot
Match: UPI00044201D0 (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI00044201D0)

HSP 1 Score: 84.3 bits (207), Expect = 9.310e-20
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:   10 GSGYFDVRAKDERWVRIKMSKGDMITLPAGIYHRFTLDDTNYIKVRDAWSG 162
            G+GYFDVR KD++W+RI M KGDMITLPAGIYHRFTLD++NY+K    ++G
Sbjct:   38 GNGYFDVRDKDDKWIRIAMEKGDMITLPAGIYHRFTLDESNYVKAMRLFAG 88
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BLAST of mRNA_Ecto-sp13_S_contig95965.21208.1 vs. uniprot
Match: A0A093P322_PYGAD (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (Fragment) n=2 Tax=Pygoscelis adeliae TaxID=9238 RepID=A0A093P322_PYGAD)

HSP 1 Score: 84.3 bits (207), Expect = 1.650e-19
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   10 GSGYFDVRAKDERWVRIKMSKGDMITLPAGIYHRFTLDDTNYIKVRDAWSG 162
            GSGYFDVR KD++W+RI M KGDMITLPAGIYHRFTLD+ NY+K    + G
Sbjct:   61 GSGYFDVRDKDDKWIRISMEKGDMITLPAGIYHRFTLDENNYVKAMRLFVG 111
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BLAST of mRNA_Ecto-sp13_S_contig95965.21208.1 vs. uniprot
Match: A0A093LH19_FULGA (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A093LH19_FULGA)

HSP 1 Score: 84.3 bits (207), Expect = 1.650e-19
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   10 GSGYFDVRAKDERWVRIKMSKGDMITLPAGIYHRFTLDDTNYIKVRDAWSG 162
            GSGYFDVR KD++W+RI M KGDMITLPAGIYHRFTLD+ NY+K    + G
Sbjct:   61 GSGYFDVRDKDDKWIRISMQKGDMITLPAGIYHRFTLDENNYVKAMRLFVG 111
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig95965.21208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4W6_ECTSI7.800e-2488.24Acireductone dioxygenase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7K5Z3X7_9AVES6.100e-2072.55MTND dioxygenase (Fragment) n=2 Tax=Pterocles TaxI... [more]
A0A091DJJ7_FUKDA6.390e-2070.591,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
A0A8C5QK59_9ANUR7.630e-2072.55Acireductone dioxygenase n=1 Tax=Leptobrachium lei... [more]
A0A8J6FVN1_ELECQ7.730e-2074.51Uncharacterized protein n=1 Tax=Eleutherodactylus ... [more]
UPI00052990FC9.310e-2070.591,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
UPI00163C32109.310e-2070.591,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
UPI00044201D09.310e-2068.631,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
A0A093P322_PYGAD1.650e-1970.591,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
A0A093LH19_FULGA1.650e-1970.591,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig95965contigEcto-sp13_S_contig95965:29..196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score97.4
Seed ortholog evalue2.2e-18
Seed eggNOG ortholog2880.D7G4W6
Preferred nameADI1
Model size168
KEGG rclassRC01866,RC02018,RC02118
KEGG koko:K08967,ko:K09419
KEGG ReactionR07363,R07364
KEGG Pathwayko00270,ko01100,map00270,map01100
KEGG ModuleM00034
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000096,GO:0000097,GO:0001871,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009987,GO:0010297,GO:0010309,GO:0016020,GO:0016053,GO:0016491,GO:0016701,GO:0016702,GO:0017144,GO:0019509,GO:0019752,GO:0030246,GO:0030247,GO:0043094,GO:0043102,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0046914,GO:0048518,GO:0050789,GO:0050794,GO:0051213,GO:0051302,GO:0055114,GO:0065007,GO:0071265,GO:0071267,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:2000241,GO:2000243
Exons1
EggNOG free text desc.acireductone dioxygenase [iron(II)-requiring] activity
EggNOG OGsCOG1791@1,KOG2107@2759
EC1.13.11.53,1.13.11.54
Cds size168
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464224.2762341-CDS-Ecto-sp13_S_contig95965:28..1961681464224.2762341-CDS-Ecto-sp13_S_contig95965:28..196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig95965 29..196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig95965.21208.1prot_Ecto-sp13_S_contig95965.21208.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig95965 29..196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig95965.21208.1

>prot_Ecto-sp13_S_contig95965.21208.1 ID=prot_Ecto-sp13_S_contig95965.21208.1|Name=mRNA_Ecto-sp13_S_contig95965.21208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
CTIGSGYFDVRAKDERWVRIKMSKGDMITLPAGIYHRFTLDDTNYIKVRD
AWSGSC
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mRNA from alignment at Ecto-sp13_S_contig95965:29..196-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig95965.21208.1 ID=mRNA_Ecto-sp13_S_contig95965.21208.1|Name=mRNA_Ecto-sp13_S_contig95965.21208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig95965:29..196- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCACAATAGGCAGCGGATACTTCGACGTGAGGGCGAAGGACGAACGTTG
GGTGAGGATCAAGATGTCTAAGGGCGACATGATCACCCTCCCTGCCGGCA
TTTACCACAGGTTCACCCTCGATGACACCAACTACATCAAGGTGAGGGAC
GCCTGGTCGGGTTCGTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig95965:29..196-

>mRNA_Ecto-sp13_S_contig95965.21208.1 ID=mRNA_Ecto-sp13_S_contig95965.21208.1|Name=mRNA_Ecto-sp13_S_contig95965.21208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig95965:29..196- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCACAATAGGCAGCGGATACTTCGACGTGAGGGCGAAGGACGAACGTTG
GGTGAGGATCAAGATGTCTAAGGGCGACATGATCACCCTCCCTGCCGGCA
TTTACCACAGGTTCACCCTCGATGACACCAACTACATCAAGGTGAGGGAC
GCCTGGTCGGGTTCGTGT
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