mRNA_Ecto-sp13_S_contig95909.21203.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig95909.21203.1
Unique NamemRNA_Ecto-sp13_S_contig95909.21203.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig95909.21203.1 vs. uniprot
Match: A0A3D5Q8X6_9GAMM (Recombination-associated protein RdgC n=1 Tax=Marinobacter sp. TaxID=50741 RepID=A0A3D5Q8X6_9GAMM)

HSP 1 Score: 107 bits (267), Expect = 5.940e-25
Identity = 60/174 (34.48%), Postives = 104/174 (59.77%), Query Frame = 1
Query:    7 QLAYQVGPAIAFAYKVDKKKVPKKVVRDRVGERAAKIEASEGRKLKSAERKQLEEDVIIGLTPQLFPEASITYGFFDVQKGYLIIGTGSSKAAEDIASHIRKGMGSLPVTQPKVSSPIADMLSTWVSSE-DAPESFQIGDKCNLNSFDELRQTAKYKNLDLHSEEVISQIESGL 525
            QL +        A + ++K +P  VV++ V E+A  IE  +GRK++  E+ +L+E V++ + P+ F +   T+ +   Q+G+L++  GS+K AED+AS++RK +GSLPV  P V    +   + W++   D P+SF++GD+C L    E     K K LDL  +E+ + +E+G+
Sbjct:   54 QLVHSANGYYLIALRSEEKILPGPVVKEAVEEKAEAIEFEQGRKVRRKEKDELKEQVLLEMLPRAFSKNRRTFAYLAPQEGWLVVDAGSAKQAEDLASYLRKSVGSLPVRPPVVEQSPSFTFTGWLNGTIDLPQSFRLGDECELKDPSEDGGVVKCKGLDLQGDEIRNHLEAGM 227          
BLAST of mRNA_Ecto-sp13_S_contig95909.21203.1 vs. uniprot
Match: A0A2G1URL9_9GAMM (Recombination-associated protein RdgC n=1 Tax=Marinobacter profundi TaxID=2666256 RepID=A0A2G1URL9_9GAMM)

HSP 1 Score: 102 bits (254), Expect = 4.740e-23
Identity = 59/174 (33.91%), Postives = 100/174 (57.47%), Query Frame = 1
Query:    7 QLAYQVGPAIAFAYKVDKKKVPKKVVRDRVGERAAKIEASEGRKLKSAERKQLEEDVIIGLTPQLFPEASITYGFFDVQKGYLIIGTGSSKAAEDIASHIRKGMGSLPVTQPKVSSPIADMLSTWVSSE-DAPESFQIGDKCNLNSFDELRQTAKYKNLDLHSEEVISQIESGL 525
            QL +  G     A + ++K +P  VV++ V ERA  IEA +GRK++  E+ +++E V++ + PQ F +   ++ +   Q G L++  GS+K AED+AS +RK +GSLPV  P V    A   + W++   D P +  +G++C L    E     + K LDLH +E+ + + +G+
Sbjct:   54 QLVHSAGGYHLIALRKEEKIIPGAVVKELVEERAEAIEAEQGRKVRKKEKDEIKEQVMLEMLPQAFSKNRRSFAYLAPQDGVLVVDAGSAKQAEDLASTLRKSLGSLPVRPPAVEQAPAFTFTGWLNETIDLPAAITLGNECELKDPSEDGGVVRCKGLDLHCDEIRNHLAAGM 227          
BLAST of mRNA_Ecto-sp13_S_contig95909.21203.1 vs. uniprot
Match: A0A5S9NLJ8_9GAMM (Recombination-associated protein RdgC n=2 Tax=BD1-7 clade bacterium TaxID=2029982 RepID=A0A5S9NLJ8_9GAMM)

HSP 1 Score: 102 bits (253), Expect = 7.530e-23
Identity = 57/175 (32.57%), Postives = 99/175 (56.57%), Query Frame = 1
Query:    1 NSQLAYQVGPAIAFAYKVDKKKVPKKVVRDRVGERAAKIEASEGRKLKSAERKQLEEDVIIGLTPQLFPEASITYGFFDVQKGYLIIGTGSSKAAEDIASHIRKGMGSLPVTQPKVSSPIADMLSTWVSSEDAPESFQIGDKCNLNSFDELRQTAKYKNLDLHSEEVISQIESGL 525
            +  L +  G  +  A K  ++ +P  VV + V ERA  I A E R+L   ER++L++ V + L P+ F  A + Y + D+ +G L+I + S+K A+++   +R+ +GSLPV      +     +++W++S D PE F +GD+C L +  +     + K+ DL S+E+ S + SGL
Sbjct:   52 SESLVHSAGNFMMVAVKRQERILPAAVVNEEVEERAEAISAKESRRLSRKERQELKDQVTMELLPRAFTRAGVQYAYIDIAEGLLVIDSSSAKRADELIDSLREAVGSLPVIPLTPKNIPLKTMTSWLTSGDLPEGFNLGDECELKALSDEGAIVRCKHQDLQSDEIQSLLGSGL 226          
BLAST of mRNA_Ecto-sp13_S_contig95909.21203.1 vs. uniprot
Match: A0A1H3DVE2_9GAMM (Recombination-associated protein RdgC n=2 Tax=Marinobacter TaxID=2742 RepID=A0A1H3DVE2_9GAMM)

HSP 1 Score: 100 bits (248), Expect = 3.530e-22
Identity = 60/174 (34.48%), Postives = 99/174 (56.90%), Query Frame = 1
Query:    7 QLAYQVGPAIAFAYKVDKKKVPKKVVRDRVGERAAKIEASEGRKLKSAERKQLEEDVIIGLTPQLFPEASITYGFFDVQKGYLIIGTGSSKAAEDIASHIRKGMGSLPVTQPKVSSPIADMLSTWVSSE-DAPESFQIGDKCNLNSFDELRQTAKYKNLDLHSEEVISQIESGL 525
            QL +  G       + ++K +P  VV++ V E+   IEA +GRK++  E+ +++E V++ + P+ F +   +Y +   Q G LI+  GS+K AED+AS +RK +GSLPV  P V    A  L+ W++   D P S  +GD+C L    E     + K LDL  +E+ S +++G+
Sbjct:   54 QLVHSAGGYHLITLRKEEKILPGPVVKELVEEKVELIEAEQGRKVRRKEKDEIKELVMLEMLPKAFSKNRRSYAYLAPQDGMLIVDAGSAKQAEDLASSLRKSLGSLPVRPPAVEQAPAFTLTGWLTETIDLPSSLVLGDECELKDPSEDGGVVRCKGLDLQGDEIRSHLDAGM 227          
BLAST of mRNA_Ecto-sp13_S_contig95909.21203.1 vs. uniprot
Match: A0A1I1ITY2_9GAMM (Recombination-associated protein RdgC n=4 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A1I1ITY2_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 6.150e-22
Identity = 55/164 (33.54%), Postives = 96/164 (58.54%), Query Frame = 1
Query:   31 AIAFAYKVDKKKVPKKVVRDRVGERAAKIEASEGRKLKSAERKQLEEDVIIGLTPQLFPEASITYGFFDVQKGYLIIGTGSSKAAEDIASHIRKGMGSLPVTQPKVSSPIADMLSTWVSSEDAPESFQIGDKCNLNSFDELRQTAKYKNLDLHSEEVISQIESG 522
            +I    K ++K +P  VV + V E+  +IE  E R +K  E+ +++E+++  L PQ F ++++ + F D++KG+L++ +GS   AE++ + +RK +GSLPV    V+  +   L+ W+++   PE F IG   +L   DE     K K  DL S+EV   +E+G
Sbjct:   62 SILVCAKREEKVLPAAVVNELVAEKVEQIEIDENRPVKKKEKDEIKENLLHSLLPQAFKKSNLQFAFIDLEKGWLVVNSGSFNKAEELLALLRKSLGSLPVVPAFVNFDLGLFLTDWLTNMSPPEGFAIGQDADLQEADENGAQVKLKQHDLSSDEVQKHLENG 225          
BLAST of mRNA_Ecto-sp13_S_contig95909.21203.1 vs. uniprot
Match: A0A2N1XVL0_9GAMM (Recombination-associated protein RdgC n=1 Tax=Gammaproteobacteria bacterium HGW-Gammaproteobacteria-3 TaxID=2013799 RepID=A0A2N1XVL0_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 6.350e-22
Identity = 57/174 (32.76%), Postives = 98/174 (56.32%), Query Frame = 1
Query:    1 NSQLAYQVGPAIAFAYKVDKKKVPKKVVRDRVGERAAKIEASEGRKLKSAERKQLEEDVIIGLTPQLFPEASITYGFFDVQKGYLIIGTGSSKAAEDIASHIRKGMGSLPVTQPKVSSPIADMLSTWVSSEDAPESFQIGDKCNLNSFDELRQTAKYKNLDLHSEEVISQIESG 522
            + QL +     I F  K ++K +P  V+ + V E+    E  +GRKL   ER  ++E+V   L P+ F  +  TY + D + G+LI+ + S+K AED+ SH+RK +GSLPV  P  ++    +++ W+S E+AP   +I D+C L + ++     + K  DL   E+ + +++G
Sbjct:   52 SDQLLHIANGFILFCAKTEEKVLPAAVINEMVQEKILDAEDLQGRKLSKKERTAIKEEVCFELLPKAFTFSRKTYAYIDSKNGWLIVDSASAKKAEDLLSHLRKCLGSLPVVPPVTANKPVVVMTQWLSGEEAPADIKIEDECELRAPEQEGGIVRCKRHDLALPEIKNHLDTG 225          
BLAST of mRNA_Ecto-sp13_S_contig95909.21203.1 vs. uniprot
Match: A4C6Q4_9GAMM (Recombination-associated protein RdgC n=1 Tax=Pseudoalteromonas tunicata D2 TaxID=87626 RepID=A4C6Q4_9GAMM)

HSP 1 Score: 98.6 bits (244), Expect = 1.240e-21
Identity = 57/164 (34.76%), Postives = 97/164 (59.15%), Query Frame = 1
Query:   31 AIAFAYKVDKKKVPKKVVRDRVGERAAKIEASEGRKLKSAERKQLEEDVIIGLTPQLFPEASITYGFFDVQKGYLIIGTGSSKAAEDIASHIRKGMGSLPVTQPKVSSPIADMLSTWVSSEDAPESFQIGDKCNLNSFDELRQTAKYKNLDLHSEEVISQIESG 522
            AI    K ++K +P  V+ + + E+   IEA E R +K  E+ +L+E+++  L PQ F ++S+ Y F D++KG+LI+ +GS   AE++ + +RK +G+LPV    V+  +   L++W++  +APE F IG +  L    E     K K  DL S+EV + + +G
Sbjct:   62 AILVCAKREEKVLPASVINELLAEKIEHIEAEENRPVKKKEKDELKENLLHSLLPQAFKKSSLQYAFIDLEKGWLIVNSGSFNKAEELLALLRKSLGTLPVVPAFVNYDLGVFLTSWLTEFNAPEGFAIGQEAELVDPTENGGQVKLKQHDLASDEVKNHLTNG 225          
BLAST of mRNA_Ecto-sp13_S_contig95909.21203.1 vs. uniprot
Match: A0A244CU98_PSEDV (Recombination-associated protein RdgC n=2 Tax=Pseudoalteromonas ulvae TaxID=107327 RepID=A0A244CU98_PSEDV)

HSP 1 Score: 98.2 bits (243), Expect = 1.730e-21
Identity = 56/164 (34.15%), Postives = 95/164 (57.93%), Query Frame = 1
Query:   31 AIAFAYKVDKKKVPKKVVRDRVGERAAKIEASEGRKLKSAERKQLEEDVIIGLTPQLFPEASITYGFFDVQKGYLIIGTGSSKAAEDIASHIRKGMGSLPVTQPKVSSPIADMLSTWVSSEDAPESFQIGDKCNLNSFDELRQTAKYKNLDLHSEEVISQIESG 522
            AI    K ++K +P  V+ D + E+   IE  E R +K  E+ +L+E+++  L PQ F ++S+ + F D++KG+L++ +GS   AE++ + +RK +G+LPV    V+  +   L+ W++  + PE F IG    L   DE     K K  DL S+EV + +E+G
Sbjct:   62 AILVCAKREEKVLPAAVINDLLAEKIEHIEIEENRPVKKKEKDELKENLLHSLLPQAFKKSSLQFAFIDLEKGWLVVNSGSFNKAEELLALLRKSLGTLPVVPAFVNFDLGLFLTNWLTEFNPPEGFAIGQDAELVEADENGGQVKLKQHDLASDEVKNHLENG 225          
BLAST of mRNA_Ecto-sp13_S_contig95909.21203.1 vs. uniprot
Match: A1U3K7_MARN8 (Recombination-associated protein RdgC n=57 Tax=Marinobacter TaxID=2742 RepID=A1U3K7_MARN8)

HSP 1 Score: 98.2 bits (243), Expect = 1.840e-21
Identity = 60/174 (34.48%), Postives = 98/174 (56.32%), Query Frame = 1
Query:    7 QLAYQVGPAIAFAYKVDKKKVPKKVVRDRVGERAAKIEASEGRKLKSAERKQLEEDVIIGLTPQLFPEASITYGFFDVQKGYLIIGTGSSKAAEDIASHIRKGMGSLPVTQPKVSSPIADMLSTWVS-SEDAPESFQIGDKCNLNSFDELRQTAKYKNLDLHSEEVISQIESGL 525
            QL +        A + ++K +P  VV++ V ERA  IE  +GRK++  E+ +L+E V++ + PQ F      + +   Q G L++  GS+K AED+AS +RK +GSLPV  P V    A  L+ W++ S D P +  +G +C L    E     + K LDL ++E+ + +E+G+
Sbjct:   54 QLVHSANGYHLIALRKEEKILPGPVVKEAVEERAEAIELEQGRKVRRKEKDELKEQVMLEMLPQAFSRNRRCFAYLAPQDGVLVVDAGSAKQAEDLASTLRKSLGSLPVRPPAVEQSPAFTLTGWLNESIDHPANITLGSECELKDPSEDGGVVRCKGLDLKADEIRNHLEAGM 227          
BLAST of mRNA_Ecto-sp13_S_contig95909.21203.1 vs. uniprot
Match: UPI001390BF50 (recombination-associated protein RdgC n=1 Tax=Pseudoxanthomonas kaohsiungensis TaxID=283923 RepID=UPI001390BF50)

HSP 1 Score: 97.8 bits (242), Expect = 2.340e-21
Identity = 55/171 (32.16%), Postives = 94/171 (54.97%), Query Frame = 1
Query:   10 LAYQVGPAIAFAYKVDKKKVPKKVVRDRVGERAAKIEASEGRKLKSAERKQLEEDVIIGLTPQLFPEASITYGFFDVQKGYLIIGTGSSKAAEDIASHIRKGMGSLPVTQPKVSSPIADMLSTWVSSEDAPESFQIGDKCNLNSFDELRQTAKYKNLDLHSEEVISQIESG 522
            L++++G A+      + K +P  VV D +  + A+IE  EGRKL    RK+L++D++  L P+ F + S      D+Q G+L + T S KAAE +AS IR+ +GS P   P        +L+ W++ E  PE   +G++C L    +     K ++ ++ S+E+   +E+G
Sbjct:   54 LSHRIGDAVWLTVGSENKILPASVVNDLLATKVAEIEEKEGRKLGGKARKRLKDDLLHELLPKAFVKNSRVDAMLDLQHGFLAVNTSSRKAAEAVASEIRRALGSFPAIPPNAEVAPRSVLTGWIAGEPLPEGLSLGEECELKDAMDGGAVLKAQHQEMLSDEIAKHLETG 224          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig95909.21203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5Q8X6_9GAMM5.940e-2534.48Recombination-associated protein RdgC n=1 Tax=Mari... [more]
A0A2G1URL9_9GAMM4.740e-2333.91Recombination-associated protein RdgC n=1 Tax=Mari... [more]
A0A5S9NLJ8_9GAMM7.530e-2332.57Recombination-associated protein RdgC n=2 Tax=BD1-... [more]
A0A1H3DVE2_9GAMM3.530e-2234.48Recombination-associated protein RdgC n=2 Tax=Mari... [more]
A0A1I1ITY2_9GAMM6.150e-2233.54Recombination-associated protein RdgC n=4 Tax=Pseu... [more]
A0A2N1XVL0_9GAMM6.350e-2232.76Recombination-associated protein RdgC n=1 Tax=Gamm... [more]
A4C6Q4_9GAMM1.240e-2134.76Recombination-associated protein RdgC n=1 Tax=Pseu... [more]
A0A244CU98_PSEDV1.730e-2134.15Recombination-associated protein RdgC n=2 Tax=Pseu... [more]
A1U3K7_MARN81.840e-2134.48Recombination-associated protein RdgC n=57 Tax=Mar... [more]
UPI001390BF502.340e-2132.16recombination-associated protein RdgC n=1 Tax=Pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig95909contigEcto-sp13_S_contig95909:2..529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score110.5
Seed ortholog evalue7.9e-22
Seed eggNOG ortholog935567.JAES01000026_gene1317
Preferred namerdgC
Model size528
KEGG koko:K03554
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0009295,GO:0019219,GO:0019222,GO:0031323,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043590,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:1901363
Exons1
EggNOG free text desc.May be involved in recombination
EggNOG OGs1MXPR@1224,1RMNN@1236,1X3BZ@135614,COG2974@1,COG2974@2
Cds size528
COG Functional cat.L
Best tax levelXanthomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464224.0035613-CDS-Ecto-sp13_S_contig95909:1..5291681464224.0035613-CDS-Ecto-sp13_S_contig95909:1..529Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig95909 2..529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig95909.21203.1prot_Ecto-sp13_S_contig95909.21203.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig95909 2..529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig95909.21203.1

>prot_Ecto-sp13_S_contig95909.21203.1 ID=prot_Ecto-sp13_S_contig95909.21203.1|Name=mRNA_Ecto-sp13_S_contig95909.21203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
NSQLAYQVGPAIAFAYKVDKKKVPKKVVRDRVGERAAKIEASEGRKLKSA
ERKQLEEDVIIGLTPQLFPEASITYGFFDVQKGYLIIGTGSSKAAEDIAS
HIRKGMGSLPVTQPKVSSPIADMLSTWVSSEDAPESFQIGDKCNLNSFDE
LRQTAKYKNLDLHSEEVISQIESGLK
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mRNA from alignment at Ecto-sp13_S_contig95909:2..529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig95909.21203.1 ID=mRNA_Ecto-sp13_S_contig95909.21203.1|Name=mRNA_Ecto-sp13_S_contig95909.21203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig95909:2..529+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACTCTCAGCTCGCTTACCAGGTAGGGCCGGCAATCGCCTTTGCCTATAA AGTCGACAAGAAAAAGGTGCCGAAAAAGGTAGTCCGCGACCGGGTCGGAG AGCGCGCTGCAAAGATTGAAGCGTCGGAAGGTAGAAAGCTTAAATCAGCG GAGCGGAAGCAGCTGGAAGAGGATGTCATCATCGGCCTGACCCCTCAGCT ATTTCCGGAGGCCTCTATAACTTACGGATTCTTTGATGTCCAAAAAGGGT ACCTTATTATTGGCACTGGGAGCTCAAAAGCCGCCGAAGATATCGCTTCC CATATCCGTAAAGGGATGGGCTCTCTTCCTGTTACGCAGCCCAAGGTTTC CAGCCCCATAGCGGACATGTTATCCACCTGGGTTTCTTCGGAGGATGCAC CTGAAAGCTTCCAGATCGGTGACAAATGCAATCTTAATTCTTTTGATGAA CTGCGCCAGACTGCTAAGTACAAAAACCTTGATCTCCACAGCGAGGAGGT AATTTCACAAATTGAATCAGGGCTCAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig95909:2..529+

>mRNA_Ecto-sp13_S_contig95909.21203.1 ID=mRNA_Ecto-sp13_S_contig95909.21203.1|Name=mRNA_Ecto-sp13_S_contig95909.21203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig95909:2..529+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACTCTCAGCTCGCTTACCAGGTAGGGCCGGCAATCGCCTTTGCCTATAA
AGTCGACAAGAAAAAGGTGCCGAAAAAGGTAGTCCGCGACCGGGTCGGAG
AGCGCGCTGCAAAGATTGAAGCGTCGGAAGGTAGAAAGCTTAAATCAGCG
GAGCGGAAGCAGCTGGAAGAGGATGTCATCATCGGCCTGACCCCTCAGCT
ATTTCCGGAGGCCTCTATAACTTACGGATTCTTTGATGTCCAAAAAGGGT
ACCTTATTATTGGCACTGGGAGCTCAAAAGCCGCCGAAGATATCGCTTCC
CATATCCGTAAAGGGATGGGCTCTCTTCCTGTTACGCAGCCCAAGGTTTC
CAGCCCCATAGCGGACATGTTATCCACCTGGGTTTCTTCGGAGGATGCAC
CTGAAAGCTTCCAGATCGGTGACAAATGCAATCTTAATTCTTTTGATGAA
CTGCGCCAGACTGCTAAGTACAAAAACCTTGATCTCCACAGCGAGGAGGT
AATTTCACAAATTGAATCAGGGCTCAAA
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