mRNA_Ecto-sp13_S_contig9563.21171.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9563.21171.1
Unique NamemRNA_Ecto-sp13_S_contig9563.21171.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9563.21171.1 vs. uniprot
Match: D8LPR5_ECTSI (Pex2_Pex12 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPR5_ECTSI)

HSP 1 Score: 452 bits (1164), Expect = 2.610e-155
Identity = 260/327 (79.51%), Postives = 264/327 (80.73%), Query Frame = 1 
Query:    1 MDMLASSALEVDSSLPSFFEMFMTQQVEQSLKPAARHAH----------------------SALALRWPSLHRLSPWFDEAFLALSLLVEAKFLSNHSSLLSESFYGLRRCRYGPKSGPPGPPTRQPASSDAEHDAHVAFDLNGAGYGQGQGLRGRDRRKALLTAAALPYLLAKLDAGHERSLAARAYGRLPRPSPQDEEPAVDGAATAARRNSSVRENNSDDAVHGGGDGGVGAGRXXXRESXXSRRGFXXXXXXXRAEARRRFFALHQLFFQVYPLLRASYEGSCLVYQWLYLFRRSAFFSPALRLTGMVVRRATIEDWQEDAEA 915
            MDMLASSALE DSSLPSFFEMFMTQQVEQSLKPAARHAH                      SALALRWPSLHRLSPWFDEAFL LSLLVEAKFLS HSSLLSESFYGLRRCRYGPKSGPPGPPT QPASSDAEHDAHVAFDLNGAGYGQGQGLR RDRRKALL  AALPYLLAKLDAGHERSLAARAYG LPRP+PQDEEPAVDGAA +ARRNSSVR +N+DD VHGG DG      XXX   XX     XXXXXXX               FQVYPLLRASYEGSCLVYQWLYLFRRSAFFSPALRLTGMVVRRATIEDWQEDAEA
Sbjct:    1 MDMLASSALEADSSLPSFFEMFMTQQVEQSLKPAARHAHRHQTSKHAPLCLCRYYVMLFAISALALRWPSLHRLSPWFDEAFLVLSLLVEAKFLSKHSSLLSESFYGLRRCRYGPKSGPPGPPTPQPASSDAEHDAHVAFDLNGAGYGQGQGLRARDRRKALLMTAALPYLLAKLDAGHERSLAARAYGGLPRPTPQDEEPAVDGAAASARRNSSVRGSNTDDGVHGGSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQVYPLLRASYEGSCLVYQWLYLFRRSAFFSPALRLTGMVVRRATIEDWQEDAEA 327
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9563.21171.1 vs. uniprot
Match: A0A7S2UT60_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT60_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.980e-13
Identity = 40/97 (41.24%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:    1 MDMLASSALEVDSSLPSFFEMFMTQQVEQSLKPAARHAHSALALRWP-SLHRLSPWFDEAFLALSLLVEAKFLSNHSSLLSESFYGLRRCRYGPKSG 288
            MDM  S      S++P++FEMF+ ++++Q LKPAA H  S L  RWP +L  L+  FDEA+ A+S  V+   L ++  LL+E  YGL+R +   + G
Sbjct:    1 MDMFISHVEVPGSTMPTYFEMFIEERIDQGLKPAAHHILSVLCERWPGALAGLASRFDEAYAAISAAVQGACLRSNDCLLAEYLYGLQRFKKRARGG 97
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9563.21171.1 vs. uniprot
Match: F0ZA90_DICPU (Peroxin-12 n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZA90_DICPU)

HSP 1 Score: 63.5 bits (153), Expect = 1.380e-7
Identity = 70/317 (22.08%), Postives = 125/317 (39.43%), Query Frame = 1 
Query:   34 DSSLPSFFEMFMTQQVEQSLKPAARHAHSALALRWPSLHRLSPWFDEAFLALSLLVEAKFLSNHSSLLSESFYGLRRCRYGPKSGPPGPPT-----RQPASSDAEHDA----------HVAFDL-------NGAGYGQGQGLRGRDRRKALLTAAALPYLLAKLDAGHER-SLAARAYGRLPRPSPQDEEPAVDGAATAARRNSSVRENNSDDAVHGGGDGGVGAGRXXXRESXXSRRGFXXXXXXXRAEARRRFFA-------LHQLFFQVYPLLRASYEGSCLVYQWLYLFRRSAFFSPALRLTGMVVRRATIED 894
            D + PSFFEM    Q+  S KPA ++  + L+ R P L  +  ++DE F +L LL+E  +L  +    SE+FY L+R +    S   G        R   +  ++HD             +F +       + A   +   ++  DR ++L+    +PY+ +KLD  +++ S      G     +   E    +G  +       +     D  +               +     +          R    +R F        L  +F +VYP + A YE    +YQ LYL+  + +++P   L  + ++R   +D
Sbjct:   10 DPNRPSFFEMLNQFQMMPSFKPALKYIFTVLSQRNPKLRYIVNYYDECFYSLLLLLEYHYLKYYEGSFSENFYNLKRIKSSKSSSVDGDTVFSLLKRLVVTPKSDHDQPELLTKSQILKKSFAMLRRNRAASAASLKEDHSIKDSDRAESLIYLVVIPYIKSKLDEYYKKESDPLMELGLYDEDNDDHERRVSNGTISDQIERERLELVELDQKLQ-------------LQHETRLKIYIRLKKLKLRYLLFKRLFGSSSILKKLKTIFLKVYPFVNAIYEALFFIYQLLYLYEYTNYYTPFFHLQSIQLKRLNHKD 313
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9563.21171.1 vs. uniprot
Match: PEX12_DICDI (Putative peroxisome assembly protein 12 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=PEX12_DICDI)

HSP 1 Score: 60.1 bits (144), Expect = 1.880e-6
Identity = 34/109 (31.19%), Postives = 53/109 (48.62%), Query Frame = 1 
Query:   34 DSSLPSFFEMFMTQQVEQSLKPAARHAHSALALRWPSLHRLSPWFDEAFLALSLLVEAKFLSNHSSLLSESFYGLRRCRYGPKSGPPGPPTRQPASSDAEHDAHVAFDL 360
            D + PSFFEM    Q+  S KPA ++  + L+ R P    +  ++DE F +L LL+E  +L  +    SE+FY L+R +              P +++A  D    F L
Sbjct:   11 DPNRPSFFEMLNQHQMMPSFKPALKYIFTVLSQRNPKFRYIVNYYDECFYSLLLLLEYHYLKYYEGSFSENFYNLKRIK--------------PRNNNANGDGDTLFSL 105
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9563.21171.1 vs. uniprot
Match: A0A151Z7L7_9MYCE (Peroxin-12 n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z7L7_9MYCE)

HSP 1 Score: 58.2 bits (139), Expect = 7.440e-6
Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:   34 DSSLPSFFEMFMTQQVEQSLKPAARHAHSALALRWPSLHRLSPWFDEAFLALSLLVEAKFLSNHSSLLSESFYGLRRCRYGPKSG 288
            D + PSFFEMF   Q+  S KPA ++  + L+ R      +  ++DE F ++ LL+E  +L  +    SE+FY L+R +   K G
Sbjct:   10 DPNRPSFFEMFAQFQMMPSFKPALKYIFTVLSQRNSKFLYIVKYYDECFYSMLLLLEYHYLKYYEGSFSENFYNLKRVKSEDKKG 94
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9563.21171.1 vs. uniprot
Match: J3JYU8_DENPD (Peroxisome assembly protein 12 n=3 Tax=Dendroctonus ponderosae TaxID=77166 RepID=J3JYU8_DENPD)

HSP 1 Score: 55.8 bits (133), Expect = 3.290e-5
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:   46 PSFFEMFMTQQVEQSLKPAARHAHSALALRWPS-LHRLSPWFDEAFLALSLLVEAKFLSNHSSLLSESFYGLRR 264
            PS FE+   Q +  +L PA +     L+ ++P  L  L  +++EAFLALS L++  +L NH    SE+FYGL+R
Sbjct:   16 PSIFEVLAQQSLTDTLYPALQKVALFLSAKFPEKLGFLDAYYNEAFLALSGLLQFYYLKNHDGSFSENFYGLKR 89
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9563.21171.1 vs. uniprot
Match: A0A5D6Y815_9STRA (Peroxin-12 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y815_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.450e-5
Identity = 56/163 (34.36%), Postives = 73/163 (44.79%), Query Frame = 1 
Query:  406 RRKALLTAAALPYLLAKLDAGHERSLAARAYGRLPRPSPQDEEPAVDGAATAARRNSSVRENNSDDAVHGGGDGGVGAGRXXXRESXXSRRGFXXXXXXXRAEARRRFFALHQLFFQVYPLLRASYEGSCLVYQWLYLFRRSAFFSPALRLTGMVVRRATIED 894
            RR++LL A  LPY+ AKLD  + R+L       LPR  P          A+AAR  S       D +  G G      GR     +      F       R +  +  F L + F Q YP    +YEGS  +YQWLYLF  + +FSP LR   +V+ R T  D
Sbjct: 1094 RRQSLLYAVMLPYVKAKLD-NYFRTL----QETLPRTMP------ATPTASAARSQSEA-----DGSERGNG------GRALVAVARARMNVFLQ-----RLQQLQVLFRLKRAFLQAYPFAHFAYEGSFFLYQWLYLFGDTPYFSPLLRRMKIVLVRVTAAD 1229
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9563.21171.1 vs. uniprot
Match: A0A7S1LPF8_NEODS (Peroxisome assembly protein 12 n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1LPF8_NEODS)

HSP 1 Score: 55.1 bits (131), Expect = 7.160e-5
Identity = 31/88 (35.23%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:    1 MDMLASSALEVDSSLPSFFEMFMTQQVEQSLKPAARHAHSALALRWPSLHRLSPWFDEAFLALSLLVEAKFLSNHSSLLSESFYGLRR 264
            M++L  S   VD+ LP+ FE+    ++  SL  A + A ++LA   P L     WFDE +L    L++  FLS+  + ++E  +GLRR
Sbjct:   20 MELLLLSQFNVDTPLPTVFELVAQDRLGDSLHGAFKFALTSLAQSVPRLAPAVHWFDEGYLVFDGLLQHLFLSHVGATMAEHAFGLRR 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9563.21171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LPR5_ECTSI2.610e-15579.51Pex2_Pex12 domain-containing protein n=2 Tax=Ectoc... [more]
A0A7S2UT60_9STRA1.980e-1341.24Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
F0ZA90_DICPU1.380e-722.08Peroxin-12 n=1 Tax=Dictyostelium purpureum TaxID=5... [more]
PEX12_DICDI1.880e-631.19Putative peroxisome assembly protein 12 n=1 Tax=Di... [more]
A0A151Z7L7_9MYCE7.440e-635.29Peroxin-12 n=1 Tax=Tieghemostelium lacteum TaxID=3... [more]
J3JYU8_DENPD3.290e-540.54Peroxisome assembly protein 12 n=3 Tax=Dendroctonu... [more]
A0A5D6Y815_9STRA6.450e-534.36Peroxin-12 n=1 Tax=Pythium brassicum TaxID=1485010... [more]
A0A7S1LPF8_NEODS7.160e-535.23Peroxisome assembly protein 12 n=1 Tax=Neobodo des... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9563contigEcto-sp13_S_contig9563:152..2723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score456.1
Seed ortholog evalue1.4e-125
Seed eggNOG ortholog2880.D8LPR5
Preferred namePEX12
Model size948
KEGG koko:K03327,ko:K06653,ko:K13345
KEGG TC2.A.66.1,3.A.20.1
KEGG Pathwayko04111,ko04146,map04111,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0006082,GO:0006464,GO:0006513,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009062,GO:0009653,GO:0009790,GO:0009791,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016054,GO:0016558,GO:0016567,GO:0016740,GO:0017038,GO:0019395,GO:0019538,GO:0019752,GO:0019787,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030258,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032991,GO:0033036,GO:0033365,GO:0034440,GO:0034613,GO:0036211,GO:0042579,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044743,GO:0045184,GO:0046395,GO:0046872,GO:0046907,GO:0046914,GO:0048137,GO:0048232,GO:0048468,GO:0048515,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0055114,GO:0061630,GO:0061659,GO:0065002,GO:0070647,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1901575,GO:1990351,GO:1990415,GO:1990429
Exons5
EggNOG free text desc.protein import into peroxisome matrix
EggNOG OGsKOG0826@1,KOG0826@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-18_002190.1
Cds size948
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464221.1147509-CDS-Ecto-sp13_S_contig9563:151..3431681464221.1147509-CDS-Ecto-sp13_S_contig9563:151..343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9563 152..343 -
1681464221.1290889-CDS-Ecto-sp13_S_contig9563:835..11151681464221.1290889-CDS-Ecto-sp13_S_contig9563:835..1115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9563 836..1115 -
1681464221.1411576-CDS-Ecto-sp13_S_contig9563:1515..16961681464221.1411576-CDS-Ecto-sp13_S_contig9563:1515..1696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9563 1516..1696 -
1681464221.1510665-CDS-Ecto-sp13_S_contig9563:1849..20251681464221.1510665-CDS-Ecto-sp13_S_contig9563:1849..2025Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9563 1850..2025 -
1681464221.161161-CDS-Ecto-sp13_S_contig9563:2604..27231681464221.161161-CDS-Ecto-sp13_S_contig9563:2604..2723Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9563 2605..2723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9563.21171.1prot_Ecto-sp13_S_contig9563.21171.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9563 152..2723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9563.21171.1

>prot_Ecto-sp13_S_contig9563.21171.1 ID=prot_Ecto-sp13_S_contig9563.21171.1|Name=mRNA_Ecto-sp13_S_contig9563.21171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=316bp
MDMLASSALEVDSSLPSFFEMFMTQQVEQSLKPAARHAHSALALRWPSLH
RLSPWFDEAFLALSLLVEAKFLSNHSSLLSESFYGLRRCRYGPKSGPPGP
PTRQPASSDAEHDAHVAFDLNGAGYGQGQGLRGRDRRKALLTAAALPYLL
AKLDAGHERSLAARAYGRLPRPSPQDEEPAVDGAATAARRNSSVRENNSD
DAVHGGGDGGVGAGRGGARESGSSRRGFSGSARRARAEARRRFFALHQLF
FQVYPLLRASYEGSCLVYQWLYLFRRSAFFSPALRLTGMVVRRATIEDWQ
EDAEAAAAAAAATAVA
back to top

mRNA from alignment at Ecto-sp13_S_contig9563:152..2723-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9563.21171.1 ID=mRNA_Ecto-sp13_S_contig9563.21171.1|Name=mRNA_Ecto-sp13_S_contig9563.21171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2572bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9563:152..2723- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATATGCTTGCTTCTTCAGCTCTGGAGGTAGATTCCAGCCTGCCGTC
TTTCTTCGAGATGTTCATGACCCAGCAGGTTGAGCAGAGCCTCAAACCGG
CGGCGAGGCATGCGCACAGGTAAGTACGCCTACAAGCTTGGCTGGATTGT
CTCAAGAGTATTTTTCAGGCGACAAAGAGTGAATATCCCTGTGTGCATTT
GTCTACGGTAGTAGTCTAGTGCGTGGTACCAATACTGAAAACCATGCCTA
AGGCGAGAAGTTCAGATTGGCAAGAGTCAGATCTGAGGTGACACGAAGGA
TGCGCTCTGACAAGATGACCCGAAAGCCCCAGCGTGGACGCCATATATCT
AGCAGCACTGCATGAGTATGTACTCGCCTTATATTGGATGCGGGAGTTCA
TAGTAGTCCAGTCTCTAGCCGCGCAATGGTTGGTTGTGTGGGGAAGGTGC
TGCACACTCTGCACAGACGCAACTACTGTAAATAGAGCACAGGTCTTGTG
GGCAAGGTGGCGCTAAAAGTTGAATCCGGGCCGCACGCCATGCCGCAGTG
AGTGATCACCTCACATTCTTTATTCACCTAACAGCAATTCCTTACCATGT
GATCTACTCCAGCACTGCTCTTGACCGCGCACGCATCAAGCATCATATCA
AGCGCCGCTCCGCTTGTGCCGTTATTGCGTGGTGCTCTTTGCGATCAGCG
CGCTGGCTCTTCGCTGGCCATCGCTACACCGCCTCTCTCCCTGGTTCGAC
GAAGCTTTTCTAGCATTGTCCCTTTTGGTCGAGGCTAAGTTTCTGTCCAA
CCACAGTTCCCTCCTGTCGGAGAGTTTCTATGGCCTCCGGCGTTGCCGTT
ACGGGCCTAAGTCAGGACCCCCTGGTGAGACCGATGGAGGGATTTAGCAG
GGGAGAGATGAGGAAATCAGCAGCATATAGAACCGCTTGTAGCAGGTTGA
ACAAGCACATCGCGTGTGTGCTTTTAGCGAGGTGTGAAACTGAATTTTTG
CCTCGTCTTCACCATGTTCATTTGCAGGGCCACCAACTCGCCAACCCGCA
AGCTCTGACGCCGAGCACGACGCGCACGTGGCTTTCGACCTCAACGGAGC
CGGCTACGGGCAAGGACAAGGGTTGCGCGGGAGAGACAGACGCAAGGCGC
TGTTGACGGCGGCGGCTCTCCCTTATCTCTTGGCCAAGCTTGACGCCGGT
CACGAAAGGTGCGGCGCCCATGGCCTGACGGTAGTTCAAGGCTTTTTAGA
ATTGCTCTGCCTACGTTTGGGCACACAAGTCTAGAAATCTGCCCAGGAGG
TCGTTTCGCAGGCTCCGAGGGGGTTGGCGGAACTGCAGTGTCTCTTTGCC
GTGCTCAACGCTGGCTTCGTACTGTAATCCGTGGGGATCATCCCGGCCCA
GTCGGATGTGTTTGTGGGAACGAGTACGGGCAGTGTTTTGTCGTCCACTA
TGGCGGTCTGCCCTTCCGGTTTGCCGAGATGTCCTACTGTGTGTTTCGGA
AGCAACCACGGGCATGCTGTCGACTCATTCGGCTCGAGATATGTATCCAA
CCAAGTCGCAAACCGACAACCCAACACTAAAAATCTGCTGTTGACCCGCG
GAAATCAGATCTTTGGCAGCTCGGGCATATGGCCGCCTCCCGCGGCCTTC
TCCGCAGGACGAAGAACCAGCGGTAGACGGAGCAGCAACAGCAGCAAGGA
GGAATAGTTCCGTTCGTGAAAACAACTCCGATGATGCTGTTCATGGTGGG
GGCGATGGCGGAGTCGGTGCCGGTCGAGGGGGTGCCCGGGAATCTGGATC
TAGCCGGCGGGGCTTCTCGGGCTCGGCAAGGAGAGCGAGGGCCGAAGCTA
GGCGACGATTTTTCGCTCTCCACCAGCTGTTTTTTCAGGTACAAATGAAA
GGGTAGATATGCTCTAAGGCCCCCACCAAGGGTTTTTTTAGGACAGGGCG
GGAGAGGGTGTGAGGAAGGGCTAATAACATGAACACCAGGGCTGAGACCG
AAGCAACGCATGGCGTTGTACCCTTGAGTTACTCTTGTTTTGGCGTGCGG
CCATTTTTTCAAATATTGGCAATATTATGGCTGCGATACCCAAAGGTTTT
GTTGGCCAGGATATCCTGGACGTTTTATGTGCAGCATGCTCGTCTATCAT
TTTTGAAATGTTGTCCGCAGCTCACGTCCTCAGCTTCGCGACATATGGTC
GCGTGCAGGTGGCGCTTTCTGGTGGCACATGCTACCAGGCGGCTCGCTAT
TGCCATACACCAGTGGGTACTGGGGCGGTTCCCCACGATTTGCCGTGAAG
AATGTTTCTTTTCTGTCAGAGAACTCAAGCCTTTCATTTTTCGAAACTGT
TCCTGACCTCGCCCGCCCATCCACCAACAGGTCTACCCACTCCTACGCGC
ATCGTACGAAGGGTCGTGCCTTGTTTACCAGTGGCTCTACCTCTTCCGTC
GGTCGGCGTTCTTCTCCCCGGCCCTAAGACTTACGGGCATGGTCGTGAGG
CGAGCAACGATAGAGGACTGGCAGGAAGATGCTGAAGCCGCGGCGGCAGC
GGCAGCAGCGACAGCAGTTGCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9563:152..2723-

>mRNA_Ecto-sp13_S_contig9563.21171.1 ID=mRNA_Ecto-sp13_S_contig9563.21171.1|Name=mRNA_Ecto-sp13_S_contig9563.21171.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=948bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9563:152..2723- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATATGCTTGCTTCTTCAGCTCTGGAGGTAGATTCCAGCCTGCCGTC
TTTCTTCGAGATGTTCATGACCCAGCAGGTTGAGCAGAGCCTCAAACCGG
CGGCGAGGCATGCGCACAGCGCGCTGGCTCTTCGCTGGCCATCGCTACAC
CGCCTCTCTCCCTGGTTCGACGAAGCTTTTCTAGCATTGTCCCTTTTGGT
CGAGGCTAAGTTTCTGTCCAACCACAGTTCCCTCCTGTCGGAGAGTTTCT
ATGGCCTCCGGCGTTGCCGTTACGGGCCTAAGTCAGGACCCCCTGGGCCA
CCAACTCGCCAACCCGCAAGCTCTGACGCCGAGCACGACGCGCACGTGGC
TTTCGACCTCAACGGAGCCGGCTACGGGCAAGGACAAGGGTTGCGCGGGA
GAGACAGACGCAAGGCGCTGTTGACGGCGGCGGCTCTCCCTTATCTCTTG
GCCAAGCTTGACGCCGGTCACGAAAGATCTTTGGCAGCTCGGGCATATGG
CCGCCTCCCGCGGCCTTCTCCGCAGGACGAAGAACCAGCGGTAGACGGAG
CAGCAACAGCAGCAAGGAGGAATAGTTCCGTTCGTGAAAACAACTCCGAT
GATGCTGTTCATGGTGGGGGCGATGGCGGAGTCGGTGCCGGTCGAGGGGG
TGCCCGGGAATCTGGATCTAGCCGGCGGGGCTTCTCGGGCTCGGCAAGGA
GAGCGAGGGCCGAAGCTAGGCGACGATTTTTCGCTCTCCACCAGCTGTTT
TTTCAGGTCTACCCACTCCTACGCGCATCGTACGAAGGGTCGTGCCTTGT
TTACCAGTGGCTCTACCTCTTCCGTCGGTCGGCGTTCTTCTCCCCGGCCC
TAAGACTTACGGGCATGGTCGTGAGGCGAGCAACGATAGAGGACTGGCAG
GAAGATGCTGAAGCCGCGGCGGCAGCGGCAGCAGCGACAGCAGTTGCG
back to top