mRNA_Ecto-sp13_S_contig9551.21164.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9551.21164.1
Unique NamemRNA_Ecto-sp13_S_contig9551.21164.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9551.21164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9551contigEcto-sp13_S_contig9551:101..1479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1379
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464220.4445212-UTR-Ecto-sp13_S_contig9551:100..3001681464220.4445212-UTR-Ecto-sp13_S_contig9551:100..300Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9551 101..300 +
1681464220.468513-UTR-Ecto-sp13_S_contig9551:690..14791681464220.468513-UTR-Ecto-sp13_S_contig9551:690..1479Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9551 691..1479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464220.4565291-CDS-Ecto-sp13_S_contig9551:300..6901681464220.4565291-CDS-Ecto-sp13_S_contig9551:300..690Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9551 301..690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9551.21164.1prot_Ecto-sp13_S_contig9551.21164.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9551 301..690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9551.21164.1

>prot_Ecto-sp13_S_contig9551.21164.1 ID=prot_Ecto-sp13_S_contig9551.21164.1|Name=mRNA_Ecto-sp13_S_contig9551.21164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp
MVVRLLGLTAAIERGGGGGKLEVLLCAREVLVWQMLVMKPPLAACIGLLP
PKASGGCWHDRVFLPREESMASFKNERMESLVLAKSVRRVGHTPQHYLLV
RFCGICSPQCLDSTGMMIGFLFVHIGRQR*
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mRNA from alignment at Ecto-sp13_S_contig9551:101..1479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9551.21164.1 ID=mRNA_Ecto-sp13_S_contig9551.21164.1|Name=mRNA_Ecto-sp13_S_contig9551.21164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1379bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9551:101..1479+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACTGTGGCGATACGCAATGTCGATGGGCCTGTTGTGGAGCGGGGAAGTG
GTGGTGGTGTGCAAGAGGTCGATGCTGCTAGCGTTGTTGCTGAGGCAGGC
GGTAATGGTGGGAACTGGGAGAAACCCTCAGGGCGTGGGCGTGCACAGCC
TGCGCCTTCGCGAGTGATGATGTCGGTAGAGCGAGAGGGCCACGACAGGG
ATGGTGGTCAGGTTGTTGGGACTGACGGCAGCGATAGAGCGTGGTGGCGG
TGGCGGCAAACTCGAGGTGTTGCTCTGTGCACGAGAGGTGCTCGTGTGGC
AAATGTTGGTGATGAAGCCACCGCTGGCAGCATGTATCGGACTGTTGCCT
CCGAAGGCGAGTGGAGGGTGTTGGCACGACCGCGTCTTTCTCCCTAGGGA
AGAGTCGATGGCATCCTTTAAAAACGAAAGGATGGAGTCCCTGGTGCTTG
CAAAGTCTGTACGCAGGGTGGGGCACACACCTCAACACTATTTGCTGGTG
CGTTTTTGCGGAATTTGCTCTCCCCAGTGTCTTGATTCTACAGGTATGAT
GATTGGCTTTCTGTTTGTGCACATCGGCCGGCAGAGGTGACCGGATGACC
AATGAAAAGCTTTGGTCGGGAAGGGAAGTGAACTCGTTTTACTTTTTTGG
CGGTGCCCCCTAACAAGCGCGGGTAGATGCGGAGGAGACCGCTGGACAGA
CTGTTCGGCCTCCGTTATTAGAAACAACGACACACACTTCTCCAGGCTTT
TTGCATCCCCGCTGATGTGGGTTTCGTTGGAAGGGCGCCCGATATGTACC
TGAAGGATGACTCGAGGTTGATGATCGTTGTTTGTTAGTACGAGCGTGTT
GAGATGGTGGGGTGGCTGTGATCTCAGTTTTGTTTTGTTTTTTCGTCGAT
GCGTCTCTTACGCGCGAATGTGTGTGCGGAAGGTTGCGATGTCACTCATC
TCGTCCAGGAAAAATACGGCATCCTTTACGCAGGCGATATGCTTAATGTC
CATAATAGCTTGGGAGGTTCTTGTGGACGGATTCATTCGCTCATCAGTGT
GTATTGTTTGTGCTTGGGTGGAGGTTATGGGTTCGAGACGCTTGTGGGGT
TCCGGCAAGGCGCGCGGTATTTTTCGTGTAAGAAGTCATTCTGGCTTCCA
CACTCCCGGCGGTGGTGTGGTGCGCTCCTGTTCGTCTTGCCACAAATAAC
GTGAACTTCGGGAAGGTTTGAGTGGGGGGTGGGGGTACGCACATGCGATA
ACCCACACCTTGTTTAATCTTTTGTTGTACGTACTGTGCAAATAGGGAGC
AGCTTTCATTGCTTTGAATTGACAACGCAATATCTTCCGAGTGAAATTCA
TCCGTTGCTGAACCAAACTTGGCTGTAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9551:101..1479+

>mRNA_Ecto-sp13_S_contig9551.21164.1 ID=mRNA_Ecto-sp13_S_contig9551.21164.1|Name=mRNA_Ecto-sp13_S_contig9551.21164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9551:101..1479+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGTCAGGTTGTTGGGACTGACGGCAGCGATAGAGCGTGGTGGCGG
TGGCGGCAAACTCGAGGTGTTGCTCTGTGCACGAGAGGTGCTCGTGTGGC
AAATGTTGGTGATGAAGCCACCGCTGGCAGCATGTATCGGACTGTTGCCT
CCGAAGGCGAGTGGAGGGTGTTGGCACGACCGCGTCTTTCTCCCTAGGGA
AGAGTCGATGGCATCCTTTAAAAACGAAAGGATGGAGTCCCTGGTGCTTG
CAAAGTCTGTACGCAGGGTGGGGCACACACCTCAACACTATTTGCTGGTG
CGTTTTTGCGGAATTTGCTCTCCCCAGTGTCTTGATTCTACAGGTATGAT
GATTGGCTTTCTGTTTGTGCACATCGGCCGGCAGAGGTGA
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