mRNA_Ecto-sp13_S_contig95461.21156.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig95461.21156.1
Unique NamemRNA_Ecto-sp13_S_contig95461.21156.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig95461.21156.1 vs. uniprot
Match: D8LU44_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU44_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.040e-19
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:   22 GAWDQSSAGGALGRPLFYTNPQYAVVLTQKTKVHIEVRAPKD 147
            GAWDQSSAGGALGRPLFYTNPQYAVVLTQKTKVHIEVRAPKD
Sbjct:  251 GAWDQSSAGGALGRPLFYTNPQYAVVLTQKTKVHIEVRAPKD 292
[Close]
BLAST of mRNA_Ecto-sp13_S_contig95461.21156.1 vs. uniprot
Match: D8LU46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU46_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.210e-15
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:   22 GAWDQSSAGGALGRPLFYTNPQYAVVLTQ-KTKVHIEVRAPKD 147
            GAWDQSSAGGALG P FYTNPQYA+VLTQ +TKVH+EVRAPKD
Sbjct:  301 GAWDQSSAGGALGTPFFYTNPQYALVLTQPETKVHVEVRAPKD 343
[Close]
BLAST of mRNA_Ecto-sp13_S_contig95461.21156.1 vs. uniprot
Match: A0A6H5KSF9_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.330e-15
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   40 SAGGALGRPLFYTNPQYAVVLTQKTKVHIEVRAPKDVSETKIG 168
            SAGGALG PLFYTNPQYAVVLTQKTKVHIEVRAPKD++ T + 
Sbjct:  263 SAGGALGSPLFYTNPQYAVVLTQKTKVHIEVRAPKDINATVVS 305
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig95461.21156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LU44_ECTSI1.040e-19100.00Calpain catalytic domain-containing protein n=1 Ta... [more]
D8LU46_ECTSI1.210e-1586.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSF9_9PHAE2.330e-1583.72Calpain catalytic domain-containing protein n=1 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig95461contigEcto-sp13_S_contig95461:84..254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score90.1
Seed ortholog evalue3.6e-16
Seed eggNOG ortholog2880.D8LU44
Model size171
KEGG koko:K08582
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
Cds size171
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464219.869534-CDS-Ecto-sp13_S_contig95461:83..2541681464219.869534-CDS-Ecto-sp13_S_contig95461:83..254Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig95461 84..254 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig95461.21156.1prot_Ecto-sp13_S_contig95461.21156.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig95461 84..254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig95461.21156.1

>prot_Ecto-sp13_S_contig95461.21156.1 ID=prot_Ecto-sp13_S_contig95461.21156.1|Name=mRNA_Ecto-sp13_S_contig95461.21156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
LLGLLFQGAWDQSSAGGALGRPLFYTNPQYAVVLTQKTKVHIEVRAPKDV
SETKIGF
back to top

mRNA from alignment at Ecto-sp13_S_contig95461:84..254+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig95461.21156.1 ID=mRNA_Ecto-sp13_S_contig95461.21156.1|Name=mRNA_Ecto-sp13_S_contig95461.21156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig95461:84..254+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTTGGTTTGTTGTTCCAGGGCGCATGGGATCAAAGCAGTGCTGGGGG
AGCACTGGGGAGACCGCTTTTCTACACCAACCCACAGTACGCGGTTGTGC
TCACACAAAAAACAAAGGTCCACATCGAAGTCCGGGCACCCAAAGACGTG
AGCGAAACAAAGATCGGTTTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig95461:84..254+

>mRNA_Ecto-sp13_S_contig95461.21156.1 ID=mRNA_Ecto-sp13_S_contig95461.21156.1|Name=mRNA_Ecto-sp13_S_contig95461.21156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig95461:84..254+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTTGGTTTGTTGTTCCAGGGCGCATGGGATCAAAGCAGTGCTGGGGG
AGCACTGGGGAGACCGCTTTTCTACACCAACCCACAGTACGCGGTTGTGC
TCACACAAAAAACAAAGGTCCACATCGAAGTCCGGGCACCCAAAGACGTG
AGCGAAACAAAGATCGGTTTC
back to top