mRNA_Ecto-sp13_S_contig9546.21154.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9546.21154.1
Unique NamemRNA_Ecto-sp13_S_contig9546.21154.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9546.21154.1 vs. uniprot
Match: D8LR38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR38_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 6.420e-83
Identity = 121/123 (98.37%), Postives = 121/123 (98.37%), Query Frame = 1 
Query:    1 QELDLNRVYEEIDAGSQRSRNTRPLCEKTGALPVTNKSLFHRFKERPIRCRNCKELYLEAQNHDLCCAYHPGEYKRACPRSCPGLTEKCMSHRVMRWTCCDMNDPGSWGSSGCKTRCHFPPFD 369
            QELDLNRVYEEIDAGSQRSRNTRPLCEKTGALPVT KSLFHRFKERPIRCRNCKELYLEAQNHDLCCAYHPGEYKRACPRSCPGLTEKCMSHRVMRWTCCD NDPGSWGSSGCKTRCHFPPFD
Sbjct: 2968 QELDLNRVYEEIDAGSQRSRNTRPLCEKTGALPVTRKSLFHRFKERPIRCRNCKELYLEAQNHDLCCAYHPGEYKRACPRSCPGLTEKCMSHRVMRWTCCDKNDPGSWGSSGCKTRCHFPPFD 3090
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BLAST of mRNA_Ecto-sp13_S_contig9546.21154.1 vs. uniprot
Match: A0A7S1Y0M6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0M6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.910e-28
Identity = 53/95 (55.79%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:  100 VTNKSLFHRFKERPIRCRNCKELYLEAQNHDLCCAYHPGEYKRACPRSCPGLTE-----KCMSHRVMRWTCCDMNDPGSWGSSGCKTRCHFPPFD 369
            V  ++L  +   RPIRCR C   YLE+QNHDLCCA+HPGEY+ ACPRSC    E     KCMSHRV RWTCCD     S    GC  R H PP D
Sbjct:  566 VPRRTLMQKHTSRPIRCRGCGTFYLESQNHDLCCAFHPGEYRVACPRSCEAAREGKVLPKCMSHRVKRWTCCDHRKESS---EGCTRRSHIPPLD 657
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BLAST of mRNA_Ecto-sp13_S_contig9546.21154.1 vs. uniprot
Match: A0A6G0WGR8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGR8_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.540e-24
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:  112 SLFHRFKERPIRCRNCKELYLEAQNHDLCCAYHPGEYKRACPRSCPG-----LTEKCMSHRVMRWTCCDMNDPGSWGSSGCKTRCHFP 360
            +L  +F+ R I+CR CK +Y EAQN+   C YHPG+Y+RAC RSCP      +   CM HR MRW CCD  + G++GS+GCK R H P
Sbjct: 2273 TLLKKFQHRWIQCRLCKTMYSEAQNNRFACVYHPGQYERACVRSCPSRSGEPMQSNCMLHRAMRWLCCDETEEGAFGSTGCKRRFHLP 2360
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BLAST of mRNA_Ecto-sp13_S_contig9546.21154.1 vs. uniprot
Match: A0A7S2T9Q6_PROMC (Hypothetical protein (Fragment) n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2T9Q6_PROMC)

HSP 1 Score: 86.3 bits (212), Expect = 3.710e-19
Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:  100 VTNKSLFHRFKERPIRCRNCKELYLEAQNHDLCCAYHPGEYKRACPRSCPGLTEK------CMSHRVMRWTCCDMNDPGSWGSSGCKTRCHF 357
            V  +++  R   R ++C+ CK++++EA N+   CAYHPG Y  ACP +C    E       CM+H   RW+CCD + P ++G  GC+ R H 
Sbjct:   37 VEQQTIMQRHTNRKVKCKMCKDMFMEAANNSQACAYHPGVYVVACPETCTKQNENGSVDTACMTHYRRRWSCCDKSKPVAFGKDGCQKRWHL 128
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BLAST of mRNA_Ecto-sp13_S_contig9546.21154.1 vs. uniprot
Match: A0A7S2E2L7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E2L7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.000e-13
Identity = 39/88 (44.32%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:    1 QELDLNRVYEEIDAGSQRSRN--TRPLCEKT--GALPVTNKSLFHRFKERPIRCRNCKELYLEAQNHDLCCAYHPGEYKRACPRSCPG 252
            QELDL R++ E     +R+ +   +P  E    G     +++L  R K RPI+CR C + YL++QN D  CAYHPG YK ACPR C G
Sbjct:  575 QELDLKRLHPETRDAEERAEHGVVKPNEEANDGGGGTGVSRTLHERHKARPIQCRLCGQFYLDSQNVDTACAYHPGVYKIACPRWCDG 662
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BLAST of mRNA_Ecto-sp13_S_contig9546.21154.1 vs. uniprot
Match: A0A6H5KLE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE9_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 3.700e-6
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 3 
Query:    6 IGPEPCLRGDRRRIAAVAKHTTPL 77
            IGPEPCLRGDRRRIAAVAKHTTPL
Sbjct:  828 IGPEPCLRGDRRRIAAVAKHTTPL 851
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9546.21154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LR38_ECTSI6.420e-8398.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1Y0M6_9STRA3.910e-2855.79Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6G0WGR8_9STRA2.540e-2451.14Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2T9Q6_PROMC3.710e-1938.04Hypothetical protein (Fragment) n=1 Tax=Prorocentr... [more]
A0A7S2E2L7_9STRA5.000e-1344.32Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6H5KLE9_9PHAE3.700e-6100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9546contigEcto-sp13_S_contig9546:985..1891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score272.3
Seed ortholog evalue1.1e-70
Seed eggNOG ortholog2880.D8LR38
Model size370
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2C4QV@1,2QVNB@2759
Cds size369
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464219.7409956-CDS-Ecto-sp13_S_contig9546:984..11161681464219.7409956-CDS-Ecto-sp13_S_contig9546:984..1116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9546 985..1116 +
1681464219.752591-CDS-Ecto-sp13_S_contig9546:1504..16501681464219.752591-CDS-Ecto-sp13_S_contig9546:1504..1650Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9546 1505..1650 +
1681464219.7636423-CDS-Ecto-sp13_S_contig9546:1800..18911681464219.7636423-CDS-Ecto-sp13_S_contig9546:1800..1891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9546 1801..1891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9546.21154.1prot_Ecto-sp13_S_contig9546.21154.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9546 985..1891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9546.21154.1

>prot_Ecto-sp13_S_contig9546.21154.1 ID=prot_Ecto-sp13_S_contig9546.21154.1|Name=mRNA_Ecto-sp13_S_contig9546.21154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
QELDLNRVYEEIDAGSQRSRNTRPLCEKTGALPVTNKSLFHRFKERPIRC
RNCKELYLEAQNHDLCCAYHPGEYKRACPRSCPGLTEKCMSHRVMRWTCC
DMNDPGSWGSSGCKTRCHFPPFD
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mRNA from alignment at Ecto-sp13_S_contig9546:985..1891+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9546.21154.1 ID=mRNA_Ecto-sp13_S_contig9546.21154.1|Name=mRNA_Ecto-sp13_S_contig9546.21154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=907bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9546:985..1891+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAATTGGACCTGAACCGTGTTTACGAGGAGATCGACGCCGGATCGCA
GCGGTCGCGAAACACACGACCCCTCTGCGAGAAAACTGGAGCCCTCCCAG
TGACGAACAAGAGCCTGTTTCATCGTTTCAAGGTCACACATACTTACATA
GGGGATTATACGGCGGGTAATTAAGAGGAATTTTCGCTGACGACCGACCA
GTGCTCCATGTTGAGTGGGCAGTAGCCCACAGAAATCCCCACGTCGGACC
CTTGACAACTTTTTTCTGACGTATCTGCTGTTTTTCTGGGCGATCTAAAG
CACTCTCGGGCGTTGCTTCCCATGCACCTGTAGCTTCTGCCGAGGAGGGT
GAACGCCCGAGATGCGCGAACCGATTGCGAAGGATGGTTGCTGACAAGCG
GTTTCACCACAGGAACGAGGGTCACGTTGTTCCATTCAGCAACACTTTGT
CCCGCTCTTCCTTGTTCGCCTGTGTGTGTTCGGGGAATCGCCGTCTTGTT
GCGTATGCTTGAAATTCCAGGAGCGTCCGATTCGATGCCGGAACTGCAAG
GAACTTTACCTCGAGGCTCAGAATCACGACCTTTGCTGCGCCTACCACCC
GGGGGAGTACAAAAGGGCTTGCCCTCGCAGCTGTCCTGGGCTCACGGAAA
AGTGCATGAGCCACAGGTGATGCTGCTTGAGTTTCAGAGTCCTCTTGATG
TAGCCACCAGTCGATTCGCCAAAAACGTAATCTGTATGGTTCTCTTTACG
AAAGTGAGCGTAACAGCACCGGACACCAACCCGTACACGGTACCACAAAA
TCGAAACCAATTGAAGGGTGATGCGGTGGACATGCTGCGACATGAACGAC
CCAGGATCATGGGGGTCATCCGGGTGTAAGACTCGCTGCCACTTCCCGCC
GTTCGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9546:985..1891+

>mRNA_Ecto-sp13_S_contig9546.21154.1 ID=mRNA_Ecto-sp13_S_contig9546.21154.1|Name=mRNA_Ecto-sp13_S_contig9546.21154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9546:985..1891+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAATTGGACCTGAACCGTGTTTACGAGGAGATCGACGCCGGATCGCA
GCGGTCGCGAAACACACGACCCCTCTGCGAGAAAACTGGAGCCCTCCCAG
TGACGAACAAGAGCCTGTTTCATCGTTTCAAGGAGCGTCCGATTCGATGC
CGGAACTGCAAGGAACTTTACCTCGAGGCTCAGAATCACGACCTTTGCTG
CGCCTACCACCCGGGGGAGTACAAAAGGGCTTGCCCTCGCAGCTGTCCTG
GGCTCACGGAAAAGTGCATGAGCCACAGGGTGATGCGGTGGACATGCTGC
GACATGAACGACCCAGGATCATGGGGGTCATCCGGGTGTAAGACTCGCTG
CCACTTCCCGCCGTTCGAT
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