mRNA_Ecto-sp13_S_contig954.21147.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig954.21147.1
Unique NamemRNA_Ecto-sp13_S_contig954.21147.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig954.21147.1 vs. uniprot
Match: A0A381YVY6_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381YVY6_9ZZZZ)

HSP 1 Score: 104 bits (260), Expect = 3.290e-25
Identity = 70/167 (41.92%), Postives = 98/167 (58.68%), Query Frame = 1
Query:    1 MMIGFVGRKRSGKDTLAMFVRDLWPDTNIMSFADPLKQACKHAYHLKDEQLEKTKDEVDHRWGMTPRDMMKSLGGKYFRHEDPHHWTKNMAFRIQGL--DSVVISDVRFQNEAVFVKESGGVLIHVWR-DMESNSDN-DVSEQTTDEISCDHYIRNDGSLEDLRVKL 489
            M+IGF G+ RSGKDT A F+ D +   +  SFA P+K +CK  + L DEQ E+ K+EV   WG +PR M + +G    R  DP+ W KN    +Q     +VVISDVRF NEA+++   GGV+I + R D E  ++N   SE    +   D  I N+G++ DL  +L
Sbjct:    1 MLIGFAGKARSGKDTAAKFLCDEYRCLHY-SFAKPIKDSCKIMFQLTDEQ-ERNKEEVIEPWGYSPRKMYQHIGTDIGRSLDPNIWVKNAEIFVQKNLGRTVVISDVRFSNEAMWIHNRGGVVIQIIRGDNEGIAENLHASEHGMTDKDYDATIYNNGTIADLHNEL 165          
BLAST of mRNA_Ecto-sp13_S_contig954.21147.1 vs. uniprot
Match: A0A2D6TNP3_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Pacearchaeota archaeon TaxID=2026773 RepID=A0A2D6TNP3_9ARCH)

HSP 1 Score: 105 bits (261), Expect = 3.590e-25
Identity = 64/173 (36.99%), Postives = 101/173 (58.38%), Query Frame = 1
Query:    1 MMIGFVGRKRSGKDTLAMFVRDLWPDTNIMSFADPLKQACKHAYHLKDEQLEKTKDEVDHRWGMTPRDMMKSLGGKYFRHEDPHHWTKNMAFRIQGLD--SVVISDVRFQNEAVFVKESGGVLIHVWRD--MESNSDNDVSEQTTDEISCDHYIRNDGSLEDLRVKLVAVLSA 507
            M+IGF G+ RSGKDT A ++ D +   +   FA P+K++ K  + L DEQ E+ K+     WG++PR M + +G +  R  DP+ W KN    +      +V+ISDVRF NEA++++  GG++I + RD  +  +     SE   DE   D+ I N+GS+++L  KL ++  A
Sbjct:   15 MVIGFAGKARSGKDTAAKYLCDTFNCLHYF-FAKPIKESIKIMFQLTDEQ-ERNKEVAIEPWGISPRKMYQRIGTEVGRSLDPNIWVKNAEIFVNKNPGRTVIISDVRFSNEALWIRNRGGIVIQIVRDDTIRISEHEHASEHGMDENDYDYTIHNNGSVDELHHKLYSLTEA 185          
BLAST of mRNA_Ecto-sp13_S_contig954.21147.1 vs. uniprot
Match: A0A836CF82_9STRA (Deoxynucleotide monophosphate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF82_9STRA)

HSP 1 Score: 103 bits (258), Expect = 5.920e-25
Identity = 68/163 (41.72%), Postives = 93/163 (57.06%), Query Frame = 1
Query:    4 MIGFVGRKRSGKDTLAMFVRDLWPDTNIMSFADPLKQACKHAYHLKDEQLEKT--KDEVDHRWGMTPRDMMKSLGGKYFR-HEDPHHWTKNMAFRIQGL--DSVVISDVRFQNEAVFVKESGGVLIHVWRDMESNSDNDVSEQTTDEISCDHYIRNDGSLEDL 477
            +IG VG K +GKDT A  +          SFA P+K+AC   + L DE  E    K+ VD RWG++PR M+++LG +  R H    HW ++M+ R++    D +VI+DVRF++EA FVK  GG LI + R   +  D   SE     I+CD  I NDGS E L
Sbjct:    3 IIGLVGTKGAGKDTFADAL-----GLPKFSFAAPIKEACCAIFMLDDEAFEDRHLKETVDPRWGISPRSMLQTLGTECVRGHFGDDHWIRHMSMRLEQCSEDDIVITDVRFRDEADFVKARGGELIRIVRPALNVDDAHSSETAIRNIACDAIILNDGSKEQL 160          
BLAST of mRNA_Ecto-sp13_S_contig954.21147.1 vs. uniprot
Match: A0A836CHH3_9STRA (Deoxynucleotide monophosphate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH3_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.180e-24
Identity = 66/163 (40.49%), Postives = 94/163 (57.67%), Query Frame = 1
Query:    4 MIGFVGRKRSGKDTLAMFVRDLWPDTNIMSFADPLKQACKHAYHLKDEQLE--KTKDEVDHRWGMTPRDMMKSLGGKYFR-HEDPHHWTKNMAFRIQGLDS--VVISDVRFQNEAVFVKESGGVLIHVWRDMESNSDNDVSEQTTDEISCDHYIRNDGSLEDL 477
            +IG VG K +GKDT A  +          SFA P+K+AC   + L DE  E  + K+ VD RWG++PR M+++LG +  R H   +HW ++M+ R+   D   VVI+DVRF++EA FV+E GG LI + R   +  D   SE     I CD  + N+G+ E L
Sbjct:    3 IIGLVGTKGAGKDTFADAL-----GLPKYSFAAPIKEACCAIFMLDDEAFEDRRLKETVDPRWGISPRSMLQTLGTECVRGHFGDNHWIRHMSMRLDQCDEDEVVITDVRFRDEADFVRERGGELIQIVRPAHATVDAHSSETAIYNIPCDTIVLNNGTKEQL 160          
BLAST of mRNA_Ecto-sp13_S_contig954.21147.1 vs. uniprot
Match: A0A836CMM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMM7_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.260e-24
Identity = 65/179 (36.31%), Postives = 100/179 (55.87%), Query Frame = 1
Query:    1 MMIGFVGRKRSGKDTLAMFVRDLWPDTNIMSFADPLKQACKHAYHLKDEQLEKT--KDEVDHRWGMTPRDMMKSLGGKYFRHE-DPHHWTKNMAFRIQGLDS--VVISDVRFQNEAVFVKESGG---VLIHVWRDMESN-SDNDVSEQTTDEISCDHYIRNDGSLEDLRVKLVAVLSAL 510
            +++G V  K +GKDT A  V D   D   +SFADP+K AC+  + L  + LE    K+ VD RWG++ R MM+ LG +  R      HW +++  R+    S   +++DVRF NEA F+++  G   VLI + R   ++  D   SE    +I+CD  + NDG+++DL+ K   +L  L
Sbjct:    5 LIVGLVAPKAAGKDTFANAVGDDAKDFAKLSFADPIKAACRSIFSLDVDDLEDRVKKESVDDRWGVSRRKMMQVLGTECVRANFGEDHWIRHLRMRLDACQSQIAIVTDVRFHNEAQFLRDYEGCRAVLIRITRPRSTDVRDEHASESAIADINCDVTVLNDGTVQDLQTKACGILMRL 183          
BLAST of mRNA_Ecto-sp13_S_contig954.21147.1 vs. uniprot
Match: A0A836CH84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH84_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.460e-24
Identity = 66/178 (37.08%), Postives = 101/178 (56.74%), Query Frame = 1
Query:    4 MIGFVGRKRSGKDTLAMFVRDLWPDTNIMSFADPLKQACKHAYHLKDEQLE--KTKDEVDHRWGMTPRDMMKSLGGKYFRHE-DPHHWTKNMAFRIQGL--DSVVISDVRFQNEAVFVKE---SGGVLIHVWRDMESNS-DNDVSEQTTDEISCDHYIRNDGSLEDLRVKLVAVLSAL 510
            ++G V RK +GKDT A  V          +FADP+K AC+  + L ++ LE  + K+ +D RWG++ R MM+ LG +  R      HW K++ FR+     D  +++DVRF+NEA F+++   S  VLI + R +   + D   SE   D I+CD  I NDG+++ L+ K +A L  L
Sbjct:    6 IVGLVARKGAGKDTFANAVAFDGTAFARFAFADPIKAACRAVFLLSEDDLEDREKKEAIDERWGVSRRSMMQILGTECVRANFGEEHWIKHLQFRLDACTSDVAIVTDVRFENEARFLRDYIGSCAVLIRIARPVSDGATDEHASESAIDAITCDMTIANDGTVQTLQKKAIATLMKL 183          
BLAST of mRNA_Ecto-sp13_S_contig954.21147.1 vs. uniprot
Match: A0A835YKK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKK8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 9.410e-23
Identity = 65/179 (36.31%), Postives = 99/179 (55.31%), Query Frame = 1
Query:    1 MMIGFVGRKRSGKDTLAMFVRDLWPDTNIMSFADPLKQACKHAYHLKDEQLEKT--KDEVDHRWGMTPRDMMKSLGGKYFRHE-DPHHWTKNMAFRIQGLDS--VVISDVRFQNEAVFVKESGG---VLIHVWRDMESN-SDNDVSEQTTDEISCDHYIRNDGSLEDLRVKLVAVLSAL 510
            +++G V  K +GKDT A  V D   D   +SFADP+K AC+  + L  + LE    K+ VD RWG++ R MM+ LG +  R      HW +++  R+    S   +++DVRF NEA F+++  G   VLI + R    +  D   SE    +I+CD  + NDG+++DL+ K   +L  L
Sbjct:  138 LIVGLVAPKAAGKDTFANAVGDDAKDFAKLSFADPIKAACRSIFLLDVDDLEDRVKKESVDDRWGVSRRKMMQVLGTECVRANFGEDHWIRHLRMRLDACQSQIAIVTDVRFHNEAQFLRDYEGCRAVLIRITRPRSMDVRDEHASESAIADINCDMTVLNDGTVQDLQTKACGILMRL 316          
BLAST of mRNA_Ecto-sp13_S_contig954.21147.1 vs. uniprot
Match: A0A836CE54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE54_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.760e-22
Identity = 65/166 (39.16%), Postives = 95/166 (57.23%), Query Frame = 1
Query:    4 MIGFVGRKRSGKDTLAMFVRDLWPDTNIMSFADPLKQACKHAYHLKDEQLEKT--KDEVDHRWGMTPRDMMKSLGGKYFR-HEDPHHWTKNMAFRIQGLDS--VVISDVRFQNEAVFVKESGGVLIHVWRDMESNSDNDVSEQTTDEISCDHYIRNDGSLEDLRVK 486
            ++G VG + +GKDT A  +   +P     +FA P+K AC+  +    E  E    K+ VD RWG++PR+M++ LG +  R H    HW ++M  ++Q  +S  VVI+DVRF +EA FV+  GG L+ + R      D  VSE     I CD  I NDGS++D+R K
Sbjct:    3 VLGLVGTRGAGKDTFADALG--FP---AFAFAQPIKDACEAIFMAGAEAFEDRVIKETVDERWGVSPREMLQILGTECVRGHFGEDHWIRHMEMQLQRCESESVVITDVRFPDEAAFVRRLGGRLVRIVRPTLRTDDAHVSETGIGGIECDEIIVNDGSIQDIREK 163          
BLAST of mRNA_Ecto-sp13_S_contig954.21147.1 vs. uniprot
Match: A0A2E4WBV3_9BACT (Deoxynucleotide monophosphate kinase n=2 Tax=root TaxID=1 RepID=A0A2E4WBV3_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 8.340e-21
Identity = 61/168 (36.31%), Postives = 98/168 (58.33%), Query Frame = 1
Query:    1 MMIGFVGRKRSGKDTLAMFVRDLWPDTNIMSFADPLKQACKHAYHLKDEQLEKTKDEVDHRWGMTPRDMMKSLGGKYFRHEDPHHWTKNMA-FRIQGLD-SVVISDVRFQNEAVFVKESGGVLIHV---WRDMESNSDNDVSEQTTDEISCDHYIRNDGSLEDLRVKL 489
            ++IGF G+ RSGKDT   ++ D +   +   FA PLK+  KH ++L +EQ+ K K++V   WG +PR++ + LG    R  D   W KN   FR Q    S+V++DVRF NEA ++++ GG++I++    R +ES++ +      + E   D  I NDG++  L  K+
Sbjct:   15 VVIGFAGKARSGKDTAGQYLVDRYRFVHYY-FAKPLKEGTKHMFNLTEEQI-KNKEKVIETWGKSPRELYQLLGTDVARSIDSDVWVKNAEMFRRQNAGFSMVVTDVRFANEAKWIRDKGGIVIYLESKTRGIESHTGHSSEHGLSGE-DVDLIIENDGTINALYEKI 179          
BLAST of mRNA_Ecto-sp13_S_contig954.21147.1 vs. uniprot
Match: A0A382ECD2_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382ECD2_9ZZZZ)

HSP 1 Score: 92.8 bits (229), Expect = 1.210e-20
Identity = 61/163 (37.42%), Postives = 96/163 (58.90%), Query Frame = 1
Query:    4 MIGFVGRKRSGKDTLAMFVRDLWPDTNIMSFADPLKQACKHAYHLKDEQLEKTKDEVDHRWGMTPRDMMKSLGGKYFRHEDPHHWTKNMAFRIQGLD--SVVISDVRFQNEAVFVKESGGVLIHVWRDMESNSDNDVSEQ---TTDEISCDHYIRNDGSLEDL 477
            MIG  G+  +GKDTL  ++ D +   +   FA PLK+  K  ++L DEQ+E  K++V   WGM+PR + + LG +  R  D + W KN    ++ +   +VVI+DVRF NEA ++   GGV+I++ RD +   +N  S +     D+I  D  I N+G++ED+
Sbjct:    1 MIGISGKAGAGKDTLGKYLCDEYRCVHYY-FAKPLKEGAKVMFNLSDEQIE-NKEQVIEPWGMSPRKIYQLLGTEVGRGIDVNVWVKNAEMFVRSVAGFTVVITDVRFSNEAFWIHNRGGVVINIVRDQDDIKENKHSSEGGLKPDDI--DLTIYNNGTIEDM 159          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig954.21147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A381YVY6_9ZZZZ3.290e-2541.92Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A2D6TNP3_9ARCH3.590e-2536.99Uncharacterized protein n=1 Tax=Candidatus Pacearc... [more]
A0A836CF82_9STRA5.920e-2541.72Deoxynucleotide monophosphate kinase n=1 Tax=Tribo... [more]
A0A836CHH3_9STRA1.180e-2440.49Deoxynucleotide monophosphate kinase n=1 Tax=Tribo... [more]
A0A836CMM7_9STRA2.260e-2436.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CH84_9STRA3.460e-2437.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKK8_9STRA9.410e-2336.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CE54_9STRA4.760e-2239.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2E4WBV3_9BACT8.340e-2136.31Deoxynucleotide monophosphate kinase n=2 Tax=root ... [more]
A0A382ECD2_9ZZZZ1.210e-2037.42Uncharacterized protein n=1 Tax=marine metagenome ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig954contigEcto-sp13_S_contig954:15289..15801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score96.7
Seed ortholog evalue1.1e-17
Seed eggNOG ortholog1523503.JPMY01000013_gene3510
Model size513
KEGG rclassRC00002,RC00078
KEGG koko:K00859
KEGG ReactionR00130
KEGG Pathwayko00770,ko01100,map00770,map01100
KEGG ModuleM00120
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.dephospho-CoA kinase activity
EggNOG OGs1NE9C@1224,1SCJ4@1236,COG0237@1,COG0237@2
EC2.7.1.24
Cds size513
COG Functional cat.H
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464219.313291-CDS-Ecto-sp13_S_contig954:15288..158011681464219.313291-CDS-Ecto-sp13_S_contig954:15288..15801Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig954 15289..15801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig954.21147.1prot_Ecto-sp13_S_contig954.21147.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig954 15289..15801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig954.21147.1

>prot_Ecto-sp13_S_contig954.21147.1 ID=prot_Ecto-sp13_S_contig954.21147.1|Name=mRNA_Ecto-sp13_S_contig954.21147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MMIGFVGRKRSGKDTLAMFVRDLWPDTNIMSFADPLKQACKHAYHLKDEQ
LEKTKDEVDHRWGMTPRDMMKSLGGKYFRHEDPHHWTKNMAFRIQGLDSV
VISDVRFQNEAVFVKESGGVLIHVWRDMESNSDNDVSEQTTDEISCDHYI
RNDGSLEDLRVKLVAVLSAL*
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mRNA from alignment at Ecto-sp13_S_contig954:15289..15801+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig954.21147.1 ID=mRNA_Ecto-sp13_S_contig954.21147.1|Name=mRNA_Ecto-sp13_S_contig954.21147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig954:15289..15801+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGATAGGGTTCGTTGGCAGGAAGCGTTCCGGGAAAGACACCCTTGC CATGTTCGTGCGTGATTTATGGCCAGACACTAACATCATGTCGTTTGCGG ACCCCCTGAAGCAGGCATGCAAGCACGCCTACCATCTCAAGGACGAACAG CTAGAGAAGACGAAGGACGAAGTCGACCATCGTTGGGGCATGACTCCCCG GGACATGATGAAATCCCTCGGCGGGAAATACTTTCGCCACGAAGACCCTC ATCACTGGACCAAGAACATGGCATTCCGCATCCAGGGCTTGGACAGCGTT GTGATTTCGGATGTTCGGTTTCAGAACGAGGCCGTCTTCGTCAAAGAGAG CGGAGGGGTTCTGATCCACGTTTGGAGGGACATGGAGAGTAACAGCGACA ACGATGTATCAGAGCAGACGACGGACGAGATATCATGCGACCACTACATT CGCAACGACGGTTCTCTGGAGGACCTTAGGGTCAAACTCGTGGCCGTGCT ATCGGCCCTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig954:15289..15801+

>mRNA_Ecto-sp13_S_contig954.21147.1 ID=mRNA_Ecto-sp13_S_contig954.21147.1|Name=mRNA_Ecto-sp13_S_contig954.21147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig954:15289..15801+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGATAGGGTTCGTTGGCAGGAAGCGTTCCGGGAAAGACACCCTTGC
CATGTTCGTGCGTGATTTATGGCCAGACACTAACATCATGTCGTTTGCGG
ACCCCCTGAAGCAGGCATGCAAGCACGCCTACCATCTCAAGGACGAACAG
CTAGAGAAGACGAAGGACGAAGTCGACCATCGTTGGGGCATGACTCCCCG
GGACATGATGAAATCCCTCGGCGGGAAATACTTTCGCCACGAAGACCCTC
ATCACTGGACCAAGAACATGGCATTCCGCATCCAGGGCTTGGACAGCGTT
GTGATTTCGGATGTTCGGTTTCAGAACGAGGCCGTCTTCGTCAAAGAGAG
CGGAGGGGTTCTGATCCACGTTTGGAGGGACATGGAGAGTAACAGCGACA
ACGATGTATCAGAGCAGACGACGGACGAGATATCATGCGACCACTACATT
CGCAACGACGGTTCTCTGGAGGACCTTAGGGTCAAACTCGTGGCCGTGCT
ATCGGCCCTGTAG
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