mRNA_Ecto-sp13_S_contig9520.21132.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9520.21132.1
Unique NamemRNA_Ecto-sp13_S_contig9520.21132.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9520.21132.1 vs. uniprot
Match: A0A6H5K573_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K573_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 4.930e-89
Identity = 139/150 (92.67%), Postives = 139/150 (92.67%), Query Frame = 3 
Query:  144 MVNGLRLTTFLFVMVALVALPNTRGTAVAEVAPAAPLGLYYEQWQQKQTEQTKLPLHLDFTSPINGTRVEGPNVFLHYKIFNTLENRELTSTEVRDLSVSTTVCFKLHGFNDVPEICAPLRVTTVTIKDALPAKWHHVTGSIKDTRTGKL 593
            MVNGLRLTT LFV VALVAL NTRGTAVAE APAAP GL YEQWQQKQ EQTKLPLHL FTSPINGTRVEGPNVFLHYKIFNTLENRELTS EVRDLSVSTTVCFKLHGFNDVPEICAPLRV TVTIKDALPAKWHHVTGSIKDT TGKL
Sbjct:    1 MVNGLRLTTLLFVRVALVALSNTRGTAVAEAAPAAPRGLDYEQWQQKQAEQTKLPLHLGFTSPINGTRVEGPNVFLHYKIFNTLENRELTSAEVRDLSVSTTVCFKLHGFNDVPEICAPLRVATVTIKDALPAKWHHVTGSIKDTSTGKL 150
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9520.21132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K573_9PHAE4.930e-8992.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9520contigEcto-sp13_S_contig9520:4648..5240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score280.4
Seed ortholog evalue6.1e-73
Seed eggNOG ortholog2880.D7FP61
Model size595
Hectar predicted targeting categorymitochondrion
Exons1
EggNOG OGs2E0VG@1,2S88X@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-08_000720.1
Cds size564
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464218.2973654-UTR-Ecto-sp13_S_contig9520:4647..46761681464218.2973654-UTR-Ecto-sp13_S_contig9520:4647..4676Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9520 4648..4676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464218.3103268-CDS-Ecto-sp13_S_contig9520:4676..52401681464218.3103268-CDS-Ecto-sp13_S_contig9520:4676..5240Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9520 4677..5240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9520.21132.1prot_Ecto-sp13_S_contig9520.21132.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9520 4677..5240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9520.21132.1

>prot_Ecto-sp13_S_contig9520.21132.1 ID=prot_Ecto-sp13_S_contig9520.21132.1|Name=mRNA_Ecto-sp13_S_contig9520.21132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=188bp
MVAVAYTHHLLHTARPHTRTPLRSYTATAPFRVARIFKMVNGLRLTTFLF
VMVALVALPNTRGTAVAEVAPAAPLGLYYEQWQQKQTEQTKLPLHLDFTS
PINGTRVEGPNVFLHYKIFNTLENRELTSTEVRDLSVSTTVCFKLHGFND
VPEICAPLRVTTVTIKDALPAKWHHVTGSIKDTRTGKL
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mRNA from alignment at Ecto-sp13_S_contig9520:4648..5240+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9520.21132.1 ID=mRNA_Ecto-sp13_S_contig9520.21132.1|Name=mRNA_Ecto-sp13_S_contig9520.21132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=593bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9520:4648..5240+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGGGGATACGGCTGCGTCCACTGCTACATGGTAGCGGTAGCTTACACG
CATCATCTTCTCCACACAGCACGCCCGCACACACGCACTCCCCTACGGTC
ATACACCGCGACTGCACCCTTCAGGGTGGCGAGAATTTTCAAGATGGTGA
ACGGCCTTCGGTTGACGACGTTTCTCTTCGTCATGGTCGCTCTTGTGGCT
CTTCCAAACACTCGTGGCACAGCAGTAGCAGAGGTAGCGCCGGCGGCCCC
TCTCGGCCTCTACTATGAGCAATGGCAGCAGAAGCAGACCGAGCAGACCA
AGCTGCCTCTACACCTTGACTTCACGAGCCCAATCAACGGCACTCGAGTT
GAAGGTCCCAACGTATTCCTTCACTACAAGATCTTCAACACCCTTGAGAA
CAGGGAGCTGACTTCGACTGAGGTCCGAGATCTCTCCGTATCAACCACGG
TGTGCTTCAAGCTCCACGGCTTCAATGATGTCCCCGAGATCTGCGCGCCG
TTGAGAGTAACCACGGTCACGATCAAGGACGCTCTTCCGGCCAAGTGGCA
CCACGTGACGGGCTCGATCAAGGACACGAGAACGGGAAAGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9520:4648..5240+

>mRNA_Ecto-sp13_S_contig9520.21132.1 ID=mRNA_Ecto-sp13_S_contig9520.21132.1|Name=mRNA_Ecto-sp13_S_contig9520.21132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9520:4648..5240+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAGCGGTAGCTTACACGCATCATCTTCTCCACACAGCACGCCCGCA
CACACGCACTCCCCTACGGTCATACACCGCGACTGCACCCTTCAGGGTGG
CGAGAATTTTCAAGATGGTGAACGGCCTTCGGTTGACGACGTTTCTCTTC
GTCATGGTCGCTCTTGTGGCTCTTCCAAACACTCGTGGCACAGCAGTAGC
AGAGGTAGCGCCGGCGGCCCCTCTCGGCCTCTACTATGAGCAATGGCAGC
AGAAGCAGACCGAGCAGACCAAGCTGCCTCTACACCTTGACTTCACGAGC
CCAATCAACGGCACTCGAGTTGAAGGTCCCAACGTATTCCTTCACTACAA
GATCTTCAACACCCTTGAGAACAGGGAGCTGACTTCGACTGAGGTCCGAG
ATCTCTCCGTATCAACCACGGTGTGCTTCAAGCTCCACGGCTTCAATGAT
GTCCCCGAGATCTGCGCGCCGTTGAGAGTAACCACGGTCACGATCAAGGA
CGCTCTTCCGGCCAAGTGGCACCACGTGACGGGCTCGATCAAGGACACGA
GAACGGGAAAGCTG
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