mRNA_Ecto-sp13_S_contig9513.21123.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9513.21123.1
Unique NamemRNA_Ecto-sp13_S_contig9513.21123.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9513.21123.1 vs. uniprot
Match: A0A6H5KYQ1_9PHAE (Tim44 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYQ1_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 2.070e-51
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 3
Query:    3 SRVVASGSLGQGAKAAKDTVKDKVEDVQEAWETSQHPLVYKLSSAWDSLTAESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFLR 278
            SRVVASGSLG+GAKAAKDTVKDKVEDVQEAWETSQHPLVYKLSSAWDSLTAESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFLR
Sbjct:  393 SRVVASGSLGRGAKAAKDTVKDKVEDVQEAWETSQHPLVYKLSSAWDSLTAESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFLR 484          
BLAST of mRNA_Ecto-sp13_S_contig9513.21123.1 vs. uniprot
Match: A0A7S2XX10_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX10_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.440e-27
Identity = 48/91 (52.75%), Postives = 69/91 (75.82%), Query Frame = 3
Query:    6 RVVASGSLGQGAKAAKDTVKDKVEDVQEAWETSQHPLVYKLSSAWDSLTAESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFLR 278
            + +   ++GQ A   K T  D++EDV+E WETSQ P++YKLS+AWD +++E++ GI VRELRRLDP+FS++DWK+D+ E  L  F+ AFLR
Sbjct:    9 KAIGKSAVGQAAGKVKTTFNDRLEDVREMWETSQSPIIYKLSAAWDMVSSETEVGIAVRELRRLDPNFSIDDWKQDVVENMLRPFLEAFLR 99          
BLAST of mRNA_Ecto-sp13_S_contig9513.21123.1 vs. uniprot
Match: A0A7S1XKH2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKH2_9STRA)

HSP 1 Score: 107 bits (267), Expect = 6.350e-26
Identity = 49/91 (53.85%), Postives = 70/91 (76.92%), Query Frame = 3
Query:    6 RVVASGSLGQGAKAAKDTVKDKVEDVQEAWETSQHPLVYKLSSAWDSLTAESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFLR 278
            R VA  S+G+GAK   + V+DK++D++EAWETSQHP+VY +SSAWDS+TAE++EG  +RELRRLDP F+ E W+  + E   P  ++A+L+
Sbjct:  146 RDVADSSVGKGAKKVGEKVQDKIDDLKEAWETSQHPIVYGISSAWDSITAETEEGYTLRELRRLDPGFNHETWRYQVTEEICPGLLAAYLK 236          
BLAST of mRNA_Ecto-sp13_S_contig9513.21123.1 vs. uniprot
Match: A0A6U0VAX0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0VAX0_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.700e-23
Identity = 46/91 (50.55%), Postives = 69/91 (75.82%), Query Frame = 3
Query:    6 RVVASGSLGQGAKAAKDTVKDKVEDVQEAWETSQHPLVYKLSSAWDSLTAESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFLR 278
            R VA   +G+ A+   + V+D+++D++EAWETSQHP+VY LSSAWDSLTAE++EG  +R+LRRLDP+F+ E W+  + E   P  ++A+L+
Sbjct:  180 RDVADSKIGREAQKVGEKVQDRIDDLKEAWETSQHPVVYGLSSAWDSLTAETEEGYTLRQLRRLDPNFNPEAWRLQVTEEMCPPLLAAYLK 270          
BLAST of mRNA_Ecto-sp13_S_contig9513.21123.1 vs. uniprot
Match: A0A7S3XJ89_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJ89_HETAK)

HSP 1 Score: 98.6 bits (244), Expect = 8.820e-23
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 3
Query:    6 RVVASGSLGQGAKAAKDTVKDKVEDVQEAWETSQHPLVYKLSSAWDSLTAESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFLR 278
            ++V    +G+ A  A   V DK+ED +EAWETSQ+PLVYKLS  +D LTA+++E + VRE RRLDP +   +WK D+ E FLP F+ AFLR
Sbjct:  112 KLVGRSPVGRAAGKAAGAVGDKLEDAREAWETSQNPLVYKLSGWYDDLTADTEEALAVREFRRLDPGWDPNEWKADVVEDFLPGFLRAFLR 202          
BLAST of mRNA_Ecto-sp13_S_contig9513.21123.1 vs. uniprot
Match: W7TL62_9STRA (Membrane transporter, Tim44-related/Ribosomal protein L45 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL62_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 8.670e-22
Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 3
Query:   27 LGQGAKAAKDTVKDKVEDVQEAWETSQHPLVYKLSSAWDSLTAESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFLR 278
            LG+ A   +  ++D+VED +E WETSQ+P+VYKLSS WD LT+E++ GI +RE+RR DP F VEDW   + E FLP F  A+L+
Sbjct:  380 LGRQAGKLRGKLQDRVEDARELWETSQNPIVYKLSSMWDDLTSETELGIALREIRRADPDFVVEDWVNTLSESFLPLFFKAYLK 463          
BLAST of mRNA_Ecto-sp13_S_contig9513.21123.1 vs. uniprot
Match: A0A067D249_SAPPC (Tim44 domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D249_SAPPC)

HSP 1 Score: 96.7 bits (239), Expect = 1.140e-21
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 3
Query:   24 SLGQGAKAAKDTVKDKVEDVQEAWETSQHPLVYKLSSAWDSLTAESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFLR 278
            ++G GAK AKD + D  EDV+E WETSQ+P VY+LSS +D L  E+ E I +RE+RR DPSF+VE+WK ++ E  +P  + AFL+
Sbjct:  202 TVGSGAKVAKDKIGDATEDVREYWETSQNPWVYRLSSIYDGLFGETAESIAIREIRRADPSFNVEEWKDNVAESVVPFVLDAFLK 286          
BLAST of mRNA_Ecto-sp13_S_contig9513.21123.1 vs. uniprot
Match: A0A7R9YWE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YWE6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.170e-21
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 3
Query:   36 GAKAAKDTVKDKVEDVQEAWETSQHPLVYKLSSAWDSLTAESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFL 275
            GAK  K  V    ED +EAWETSQ+P VY++SS +D+LTAES+  I V+ELR+LDP F++E+WKRD+ E  LPE M+ FL
Sbjct:   85 GAKDVKRKVDHLSEDAREAWETSQNPWVYRVSSVYDTLTAESEYAIAVKELRKLDPDFTLEEWKRDVVEHTLPEVMALFL 164          
BLAST of mRNA_Ecto-sp13_S_contig9513.21123.1 vs. uniprot
Match: A0A7S1D526_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D526_CYCTE)

HSP 1 Score: 92.4 bits (228), Expect = 1.080e-20
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 3
Query:   36 GAKAAKDTVKDKVEDVQEAWETSQHPLVYKLSSAWDSLTAESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFL 275
            GAK  K  + D  ED +EAWETSQ+P VY++SS +D++TAES+  + +RELR LDP F++EDWK D+ E  LP  M  FL
Sbjct:   83 GAKHVKQKIDDLSEDAREAWETSQNPWVYRISSVYDTVTAESEYTVAIRELRMLDPDFTLEDWKEDVVERTLPRIMEWFL 162          
BLAST of mRNA_Ecto-sp13_S_contig9513.21123.1 vs. uniprot
Match: A0A7S2YSU1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSU1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.520e-20
Identity = 44/80 (55.00%), Postives = 61/80 (76.25%), Query Frame = 3
Query:   36 GAKAAKDTVKDKVEDVQEAWETSQHPLVYKLSSAWDSLTAESDEGIGVRELRRLDPSFSVEDWKRDIQELFLPEFMSAFL 275
            GA+ AK+ V +  ED +EAWETSQ+P VY++SS +D+LTAES E + V+ELR LDP F+++DW+RD+ E  LP+ M  FL
Sbjct:  201 GARKAKERVDEIKEDAREAWETSQNPWVYRVSSVYDTLTAESAETLAVKELRELDPEFTLDDWRRDVVEHTLPQIMEWFL 280          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9513.21123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYQ1_9PHAE2.070e-5198.91Tim44 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S2XX10_9STRA2.440e-2752.75Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1XKH2_9STRA6.350e-2653.85Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U0VAX0_9STRA1.700e-2350.55Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3XJ89_HETAK8.820e-2352.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TL62_9STRA8.670e-2253.57Membrane transporter, Tim44-related/Ribosomal prot... [more]
A0A067D249_SAPPC1.140e-2152.94Tim44 domain-containing protein n=4 Tax=Saprolegni... [more]
A0A7R9YWE6_9STRA1.170e-2157.50Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1D526_CYCTE1.080e-2053.75Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2YSU1_9STRA1.520e-2055.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9513contigEcto-sp13_S_contig9513:638..1225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size279
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464217.9022965-UTR-Ecto-sp13_S_contig9513:637..7651681464217.9022965-UTR-Ecto-sp13_S_contig9513:637..765Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9513 638..765 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464217.9119132-CDS-Ecto-sp13_S_contig9513:765..8081681464217.9119132-CDS-Ecto-sp13_S_contig9513:765..808Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9513 766..808 -
1681464217.9207187-CDS-Ecto-sp13_S_contig9513:1118..12251681464217.9207187-CDS-Ecto-sp13_S_contig9513:1118..1225Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9513 1119..1225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9513.21123.1prot_Ecto-sp13_S_contig9513.21123.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9513 766..1225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9513.21123.1

>prot_Ecto-sp13_S_contig9513.21123.1 ID=prot_Ecto-sp13_S_contig9513.21123.1|Name=mRNA_Ecto-sp13_S_contig9513.21123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
LLELWPRGRWDRGPRLRRTRSRTRWRTFRKPGRPASTPSYISCPRRGIA*
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mRNA from alignment at Ecto-sp13_S_contig9513:638..1225-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9513.21123.1 ID=mRNA_Ecto-sp13_S_contig9513.21123.1|Name=mRNA_Ecto-sp13_S_contig9513.21123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=588bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9513:638..1225- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCTAGAGTTGTGGCCTCGGGGTCGCTGGGACAGGGGGCCAAGGCTGCG AAGGACACGGTCAAGGACAAGGTGGAGGACGTTCAGGAAGCCTGGGAGAC CAGCCAGGTGAGCGGTCGGAGGAGATGTCCCGTGCCCTGTTTCGGCGTAC TGCCCTCTGCATGTTATCGTCGTCTTTGTCGCATAGATGGTATACCTCGC CCGTAGTACCGTGCATGACACCCGGCATTTCACGGCGCCCCTCTCTACGA GACAACTGGAAGTACGGGCGTTGCGAGCGAAAGAGGCTCAGCGGGTTCGC TTGGGTCGACTTTTTGGCTAAAGAGGGCTTGCCAAGCCAAAAGCGTTCCC CTTTCTTTTGTGTTGACGCGATGCTCTTTCGCCCAAACATTTGGCCCACC GTTTTTCTGTCGCGCAGCACCCCCTCGTATATAAGCTGTCCTCGGCGTGG GATAGCTTGACGGCGGAGAGTGACGAGGGGATAGGGGTGAGGGAGCTCCG GCGTCTTGACCCTTCGTTCAGCGTGGAGGACTGGAAGAGAGACATACAGG AGCTGTTCCTGCCGGAGTTCATGTCCGCCTTCTTGAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9513:638..1225-

>mRNA_Ecto-sp13_S_contig9513.21123.1 ID=mRNA_Ecto-sp13_S_contig9513.21123.1|Name=mRNA_Ecto-sp13_S_contig9513.21123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9513:638..1225- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCTAGAGTTGTGGCCTCGGGGTCGCTGGGACAGGGGGCCAAGGCTGCG
AAGGACACGGTCAAGGACAAGGTGGAGGACGTTCAGGAAGCCTGGGAGAC
CAGCCAGCACCCCCTCGTATATAAGCTGTCCTCGGCGTGGGATAGCTTGA
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