mRNA_Ecto-sp13_S_contig9497.21116.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9497.21116.1
Unique NamemRNA_Ecto-sp13_S_contig9497.21116.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9497.21116.1 vs. uniprot
Match: D8LJL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJL0_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 4.220e-22
Identity = 52/79 (65.82%), Postives = 55/79 (69.62%), Query Frame = 2 
Query:    8 MSLQSRGTRLGAML-SLQNRKPIVS*CGCEVLPCARWPIRSAALPKKTKMRARGWHGRGMPSGSMSRLDKKTQEGSRRV 241
            MSLQSRGT  GAML SLQN +PIV  CGC V              K TKMRARGWHGRGMPSGSMSR DKKT++GSR V
Sbjct:    1 MSLQSRGTAPGAMLKSLQNGRPIVCGCGCYVNAMRSTVNPKRGASKNTKMRARGWHGRGMPSGSMSRPDKKTKDGSRPV 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9497.21116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJL0_ECTSI4.220e-2265.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9497contigEcto-sp13_S_contig9497:1125..1431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size307
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_002400.1
Cds size144
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464217.1436105-UTR-Ecto-sp13_S_contig9497:1124..12751681464217.1436105-UTR-Ecto-sp13_S_contig9497:1124..1275Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9497 1125..1275 +
1681464217.1649597-UTR-Ecto-sp13_S_contig9497:1419..14311681464217.1649597-UTR-Ecto-sp13_S_contig9497:1419..1431Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9497 1420..1431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464217.1547573-CDS-Ecto-sp13_S_contig9497:1275..14191681464217.1547573-CDS-Ecto-sp13_S_contig9497:1275..1419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9497 1276..1419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9497.21116.1prot_Ecto-sp13_S_contig9497.21116.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9497 1276..1419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9497.21116.1

>prot_Ecto-sp13_S_contig9497.21116.1 ID=prot_Ecto-sp13_S_contig9497.21116.1|Name=mRNA_Ecto-sp13_S_contig9497.21116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MRARGWHGRGMPSGSMSRLDKKTQEGSRRVEPRRRGTWSDGRPLIVS*
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mRNA from alignment at Ecto-sp13_S_contig9497:1125..1431+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9497.21116.1 ID=mRNA_Ecto-sp13_S_contig9497.21116.1|Name=mRNA_Ecto-sp13_S_contig9497.21116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=307bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9497:1125..1431+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCTTCCATGTCTCTTCAATCCCGCGGCACTAGACTTGGCGCAATGTTGT
CCTTACAGAACAGGAAGCCTATCGTGTCCTAATGCGGTTGCGAAGTGTTA
CCATGCGCTCGATGGCCAATCCGAAGCGCGGCGCTTCCGAAAAAAACCAA
AATGAGAGCAAGAGGGTGGCACGGGCGCGGGATGCCGTCCGGCTCAATGA
GCCGCCTGGACAAGAAGACTCAAGAGGGCTCTAGACGCGTTGAGCCTCGG
AGGCGTGGTACTTGGAGCGATGGGCGCCCACTGATCGTATCCTAGAAAGA
TCAATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9497:1125..1431+

>mRNA_Ecto-sp13_S_contig9497.21116.1 ID=mRNA_Ecto-sp13_S_contig9497.21116.1|Name=mRNA_Ecto-sp13_S_contig9497.21116.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9497:1125..1431+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGCAAGAGGGTGGCACGGGCGCGGGATGCCGTCCGGCTCAATGAG
CCGCCTGGACAAGAAGACTCAAGAGGGCTCTAGACGCGTTGAGCCTCGGA
GGCGTGGTACTTGGAGCGATGGGCGCCCACTGATCGTATCCTAG
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