mRNA_Ecto-sp13_S_contig9493.21115.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9493.21115.1 vs. uniprot
Match: A0A6H5L631_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L631_9PHAE) HSP 1 Score: 145 bits (365), Expect = 2.460e-38 Identity = 74/85 (87.06%), Postives = 75/85 (88.24%), Query Frame = 2
Query: 929 MLTGTAAPSPPQPKQ*MSTAAPASSTGLEGLLPTVQSRSIALSARMGRRERMAWWGPRYTCTVRPAGTVQCFTRTMSISWGKAGN 1183
MLT TAAPSPPQP MSTAAPASSTGLE LLPTVQS S ALSA MG+RERMAW GPRYT TVRPAGTVQCFTRTMSISWGKAGN
Sbjct: 1 MLTSTAAPSPPQPNHLMSTAAPASSTGLEDLLPTVQSSSKALSAPMGKRERMAWSGPRYTSTVRPAGTVQCFTRTMSISWGKAGN 85
BLAST of mRNA_Ecto-sp13_S_contig9493.21115.1 vs. uniprot
Match: D8LU81_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU81_ECTSI) HSP 1 Score: 127 bits (319), Expect = 5.350e-32 Identity = 63/69 (91.30%), Postives = 63/69 (91.30%), Query Frame = 2
Query: 977 MSTAAPASSTGLEGLLPTVQSRSIALSARMGRRERMAWWGPRYTCTVRPAGTVQCFTRTMSISWGKAGN 1183
MSTAAPASSTGLEGLLPTVQS SIALS RMGRRERMAW GPRYT TVRPAGT QC TRTMSISWGKAGN
Sbjct: 1 MSTAAPASSTGLEGLLPTVQSSSIALSGRMGRRERMAWSGPRYTFTVRPAGTAQCVTRTMSISWGKAGN 69
BLAST of mRNA_Ecto-sp13_S_contig9493.21115.1 vs. uniprot
Match: D8LU80_ECTSI (Carboxyl ester lipase (Bile salt-stimulated lipase), isoform CRA_b n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU80_ECTSI) HSP 1 Score: 104 bits (260), Expect = 2.060e-22 Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = -2
Query: 1464 VTASSAVSFKASKPDQNVRKSSLRACMEPWSSNIGAASRPFLPVESSIPFLSPSIARAGAATG 1652
VTASSAVSFKASKPDQNVRKSSLRA MEPWSSN AASRPF P+ESSIP LSPS+ARAGAATG
Sbjct: 119 VTASSAVSFKASKPDQNVRKSSLRASMEPWSSNTRAASRPFPPLESSIPLLSPSLARAGAATG 181
BLAST of mRNA_Ecto-sp13_S_contig9493.21115.1 vs. uniprot
Match: UPI001F1F2B9F (hypothetical protein n=1 Tax=Sinobacterium norvegicum TaxID=1641715 RepID=UPI001F1F2B9F) HSP 1 Score: 65.5 bits (158), Expect = 2.040e-9 Identity = 40/120 (33.33%), Postives = 56/120 (46.67%), Query Frame = 1
Query: 1105 HVHGAACGHRAVLHENHVDFLGEGGQLECYAGKERIGGDWVSVTKEGGXXXXXXCGCDDSSKKESNGPGKPTNALVHWDGARLDQTRGRCESNNHGPHCGHEVVHHDGHLDYVVNGRLLH 1464
H HG+ CGH A+ H +H+D+L +G + G CD+ S + SN TN A+ T+G C + HGP CGHE + HD H D++V+GRL H
Sbjct: 12 HTHGSNCGHTAIRHGDHIDYLADGKLHHPHGGH-----------------------CDEHSIELSN-----TNP------AQCHPTQG-CAGHVHGPDCGHEAIQHDDHTDFIVDGRLHH 96
BLAST of mRNA_Ecto-sp13_S_contig9493.21115.1 vs. uniprot
Match: UPI00197BFA9B (hypothetical protein n=1 Tax=Pirellula sp. SH-Sr6A TaxID=1632865 RepID=UPI00197BFA9B) HSP 1 Score: 60.8 bits (146), Expect = 9.630e-8 Identity = 40/121 (33.06%), Postives = 54/121 (44.63%), Query Frame = 1
Query: 1105 HVHGAACGHRAVLHENHVDFLGEGGQLECYAGKERIGGDWVSVTKEGGXXXXXXCGCDDSSKKESNGPGKPTNALVHWDGARLDQTRGRCESNNHGPHCGHEVVHHDGHLDYVVNGRLLHP 1467
H HGA CGH A+ HE+HVD+L +G L AG + +SV+ D++ + G G + HGP CGHE V H H+DY+V+G L HP
Sbjct: 10 HQHGAQCGHTAIKHEDHVDYLHDG-HLHHPAGAGCVEEHSLSVS--------------DTNPDDCTGG---------------HTCSGHAADHVHGPGCGHEAVPHGDHIDYLVDGHLHHP 100
BLAST of mRNA_Ecto-sp13_S_contig9493.21115.1 vs. uniprot
Match: A0A7C4BV65_9BACT (Uncharacterized protein n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7C4BV65_9BACT) HSP 1 Score: 60.5 bits (145), Expect = 1.350e-7 Identity = 37/124 (29.84%), Postives = 47/124 (37.90%), Query Frame = 1
Query: 1096 AKVHVHGAACGHRAVLHENHVDFLGEGGQLECYAGKERIGGDWVSVTKEGGXXXXXXCGCDDSSKKESNGPGKPTNALVHWDGARLDQTRGRCESNNHGPHCGHEVVHHDGHLDYVVNGRLLHP 1467
A H+HG CGH+AVLH +HVD+L +G VS G CG + + HGP CGHE + H H+DY+V G L HP
Sbjct: 10 AHAHIHGPGCGHKAVLHGDHVDYLHDGXXXXXXXXXXDEHAIEVSARNPGVCTPQHACGAHEPAHV-------------------------------HGPGCGHEAIPHGDHVDYLVAGHLHHP 102
BLAST of mRNA_Ecto-sp13_S_contig9493.21115.1 vs. uniprot
Match: V2TSX5_9GAMM (Uncharacterized protein n=4 Tax=Acinetobacter nectaris TaxID=1219382 RepID=V2TSX5_9GAMM) HSP 1 Score: 59.7 bits (143), Expect = 2.060e-7 Identity = 38/122 (31.15%), Postives = 53/122 (43.44%), Query Frame = 1
Query: 1099 KVHVHGAACGHRAVLHENHVDFLGEGGQLECYAGKERIGGDWVSVTKEGGXXXXXXCGCDDSSKKESNGPGKPTNALVHWDGARLDQTRGRCESNNHGPHCGHEVVHHDGHLDYVVNGRLLH 1464
K HVHG +CGH A+ HE+HVD+L + G S +KE + + P + T + G + + HGP CGHE V H H+DY+V+G L H
Sbjct: 5 KNHVHGESCGHTAIKHEDHVDYL--------------VNGHLQSDSKE-----------EHKISVDGKNPAECTQG---------HECSGHEKGHVHGPDCGHEAVPHGDHIDYLVDGHLHH 92
BLAST of mRNA_Ecto-sp13_S_contig9493.21115.1 vs. uniprot
Match: Q1ZWE0_PHOAS (Uncharacterized protein n=8 Tax=Photobacterium TaxID=657 RepID=Q1ZWE0_PHOAS) HSP 1 Score: 59.3 bits (142), Expect = 2.950e-7 Identity = 37/122 (30.33%), Postives = 52/122 (42.62%), Query Frame = 1
Query: 1105 HVHGAACGHRAVLHENHVDFLGEGGQLECYAGKERIGGDWVSVTKEGGXXXXXXCGCDDSSKKESNGPGKPTNALVHWDGARLDQTRGR--CESNNHGPHCGHEVVHHDGHLDYVVNGRLLH 1464
H HG CGH A+ H+ HVD+L +G +L G CD+ ++ +D A ++ C + HGP CGHE + H H+DY+VNGRL H
Sbjct: 12 HTHGPDCGHTAIRHDGHVDYLVDG-KLHHPHGDH----------------------CDEH--------------VIEFDDAHPNECNHSHACGDHVHGPDCGHEAIQHGDHIDYIVNGRLHH 96
BLAST of mRNA_Ecto-sp13_S_contig9493.21115.1 vs. uniprot
Match: UPI000A05AADA (hypothetical protein n=1 Tax=Coraliomargarita akajimensis TaxID=395922 RepID=UPI000A05AADA) HSP 1 Score: 58.9 bits (141), Expect = 4.230e-7 Identity = 37/121 (30.58%), Postives = 52/121 (42.98%), Query Frame = 1
Query: 1105 HVHGAACGHRAVLHENHVDFLGEGGQLECYAGKERIGGDWVSVTKEGGXXXXXXCGCDDSSKKESNGPGKPTNALVHWDGARLDQTRGRCESNNHGPHCGHEVVHHDGHLDYVVNGRLLHP 1467
H HG CGH A+ H +HVD+L +G L + ++V +++ P N H DG + HGP CGHE + H H+DY+V+GRL HP
Sbjct: 11 HQHGKGCGHTAIQHGDHVDYLHDG-HLHHQNADGTVEKHILAV--------------------DASHPSGCCNHATHSDG------------HVHGPDCGHEAIQHGDHIDYIVDGRLHHP 98
BLAST of mRNA_Ecto-sp13_S_contig9493.21115.1 vs. uniprot
Match: UPI00190366DB (hypothetical protein n=1 Tax=Pelagicoccus mobilis TaxID=415221 RepID=UPI00190366DB) HSP 1 Score: 58.9 bits (141), Expect = 4.670e-7 Identity = 41/120 (34.17%), Postives = 52/120 (43.33%), Query Frame = 1
Query: 1105 HVHGAACGHRAVLHENHVDFLGEGGQLECYAGKERIGGDWVSVTKEGGXXXXXXCGCDDSSKKESNGPGKPTNALVHWDGARLDQTRGRCESNNHGPHCGHEVVHHDGHLDYVVNGRLLH 1464
H HG CGH A+ H +HVD+L +G L + + VTK+ GC N L H DG + HGP CGHE V H H+DY+V+GRL H
Sbjct: 13 HQHGEGCGHTAIRHGDHVDYLHDG-HLHHQNKDGSVEEHVLPVTKDN------PSGCSG------------VNHLHHEDG------------HVHGPGCGHEAVPHGDHIDYIVDGRLHH 101 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9493.21115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9493.21115.1 >prot_Ecto-sp13_S_contig9493.21115.1 ID=prot_Ecto-sp13_S_contig9493.21115.1|Name=mRNA_Ecto-sp13_S_contig9493.21115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=551bp GEKPYACVHPLCGRKFARISDLRSHERTHSADAKSFECKLCGKRFTRPYDback to top mRNA from alignment at Ecto-sp13_S_contig9493:2..2301- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9493.21115.1 ID=mRNA_Ecto-sp13_S_contig9493.21115.1|Name=mRNA_Ecto-sp13_S_contig9493.21115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9493:2..2301- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9493:2..2301- >mRNA_Ecto-sp13_S_contig9493.21115.1 ID=mRNA_Ecto-sp13_S_contig9493.21115.1|Name=mRNA_Ecto-sp13_S_contig9493.21115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1653bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9493:2..2301- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |