mRNA_Ecto-sp13_S_contig9488.21105.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9488.21105.1
Unique NamemRNA_Ecto-sp13_S_contig9488.21105.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9488.21105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9488contigEcto-sp13_S_contig9488:698..5841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1401
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-22_002990.1
Cds size1401
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9488.21105.1prot_Ecto-sp13_S_contig9488.21105.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9488 698..5841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464216.4115493-CDS-Ecto-sp13_S_contig9488:697..11871681464216.4115493-CDS-Ecto-sp13_S_contig9488:697..1187Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9488 698..1187 +
1681464216.4226072-CDS-Ecto-sp13_S_contig9488:1480..16311681464216.4226072-CDS-Ecto-sp13_S_contig9488:1480..1631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9488 1481..1631 +
1681464216.4352398-CDS-Ecto-sp13_S_contig9488:2480..28181681464216.4352398-CDS-Ecto-sp13_S_contig9488:2480..2818Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9488 2481..2818 +
1681464216.446172-CDS-Ecto-sp13_S_contig9488:3690..37821681464216.446172-CDS-Ecto-sp13_S_contig9488:3690..3782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9488 3691..3782 +
1681464216.4659617-CDS-Ecto-sp13_S_contig9488:4386..44581681464216.4659617-CDS-Ecto-sp13_S_contig9488:4386..4458Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9488 4387..4458 +
1681464216.4791918-CDS-Ecto-sp13_S_contig9488:5008..51161681464216.4791918-CDS-Ecto-sp13_S_contig9488:5008..5116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9488 5009..5116 +
1681464216.4930925-CDS-Ecto-sp13_S_contig9488:5691..58411681464216.4930925-CDS-Ecto-sp13_S_contig9488:5691..5841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9488 5692..5841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9488.21105.1

>prot_Ecto-sp13_S_contig9488.21105.1 ID=prot_Ecto-sp13_S_contig9488.21105.1|Name=mRNA_Ecto-sp13_S_contig9488.21105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=467bp
RAFTLPRLSPQLGGVSHSFGREVSAGMASKKKVWAKVVDDRNSATRGKNK
RGGGGDNIGRATQSFPLTPPAPLNRLFGDDGDSAYDLDGDDIHDVSSWQQ
PTYGKNTQDMTCDTMGAPPNAESGDQRNTTPANGGDQAPELVEVDASTAD
SMARRNKSDMRSSDSEGTTGRTRGRSSAREREARASSGESFATGRAATRL
RHPRDPASPETAYRNAVQAYLSPTLEYHNSGGGNSDRSHRHTRSLSPTAG
QYRSRWCSPTAPASAPGNNNSDHGSSGVAGASTVSSSPKTGVAEKGGVPP
LLLAPSEWGIGLGGEWVSARGKRMVRASGRVSLTWSDIRGNTLLHLAAQH
NDIALAEAVLECEERRKRALEKRDRRRERVLERARRWNERTLKEAADGKL
AVKPPTLKSKDILKRIKQERAEQEKTTNFGANTPSASAGAGVPGDASGGG
SAGSSNKVNFVRTSYI*
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mRNA from alignment at Ecto-sp13_S_contig9488:698..5841+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9488.21105.1 ID=mRNA_Ecto-sp13_S_contig9488.21105.1|Name=mRNA_Ecto-sp13_S_contig9488.21105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9488:698..5841+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGCTTTCACCTTGCCTCGCCTGAGCCCGCAACTCGGCGGGGTTTCGCA
CTCTTTCGGTAGGGAAGTCAGTGCCGGTATGGCGTCAAAGAAAAAAGTGT
GGGCGAAGGTAGTCGACGATCGAAACTCTGCGACCAGGGGCAAGAACAAA
CGCGGCGGCGGTGGTGATAACATTGGCCGAGCAACGCAGAGTTTCCCTCT
CACCCCACCCGCACCACTGAACCGGTTGTTTGGGGACGATGGTGATAGCG
CCTACGACCTAGATGGTGACGATATTCATGACGTGAGTAGTTGGCAACAA
CCCACGTACGGCAAAAACACACAGGACATGACTTGTGACACGATGGGAGC
TCCTCCCAACGCAGAGTCCGGTGACCAGAGAAACACGACTCCGGCCAACG
GCGGGGATCAAGCCCCCGAGCTTGTTGAGGTAGATGCCAGCACAGCGGAT
TCTATGGCGCGAAGAAACAAGAGTGACATGCGTAGCAGCGGTGAGGATAC
TGCCTGTGTTGAGATACTGCCTGTGTACCAAAGGCAGCTACATCTGTCGT
AATAGCAGCGCAGAGTTGACCAGCACTGCATCGACAGCCCCATTTGTCGT
AAAAACAGCCCAGAGTTGACTTCGTAAAGAGCTCCAAGCGGTCCACCCAG
CTAGTCACGTCCTGGGTGCGTAACTTCAGGTTAGGTTGATACAACACACA
CCGCCTGGCAGGCCGTGGCCGTATGCGATGGTCATGGACCATTTCTACAA
AGAAGTATCCGTGCGTGTGCCCTCTCGCTGCAGACAGTGAAGGGACAACG
GGAAGGACAAGAGGAAGGTCTTCGGCTAGGGAGAGGGAGGCCAGAGCTTC
GAGCGGTGAAAGTTTCGCAACCGGAAGAGCAGCGACACGGCTCAGACACC
CTCGAGACCCTGCCTCACCCGAAACCGCGTACAGGTATATATTTGCCGGA
GTTAAGTTTGGCATACTTGTGAACCTTTGTACCTCTCACGAGACGGAAAG
AGCATGGACCCCTTACGGCGTGATGCGATTGTCTGAGCCCTCAAAAGTCT
CCACGTCAACGGTATCCTTTCTCTCCCCTGTGAAAATGCCCGATTTATTG
AGCCAGTAGAAAGAGACGCACACAGTGCACCAACAGGTGTTTGACCACCT
GTCTTGACCTTCCTCAATCCCAAAATGGAGAGGCCTGGTCTTACAGTCGA
TTACCTTCTGCCGACTCCTCTAGTGCAACGGCTCCCACGCGCCTAGGCCA
ACCTCGTCCTTGTTCCGCGTATTCCTGCCCCTGCTCCATCCTGCATGTTC
CTGGAACACGAAATACTCCCAAGCATCACTGACAATCGCATGCATGTATG
TAGTTGAGCACGCGCCGGAGATGCCATCGGTCGGAAGACGAAAAAAGGAA
CAAAACAAATATACAATGTAGAAGCAGCCCAACCCCCAAAACCCTCACCG
CCAACAACAACAAAACAACATCACAAGCGTGATTTGAAAGGGCTGACAGA
GACTACCCTGCCAACTGTAACTACAGGAAGGTTGAGGGAGGGGGGACTCG
GGAACAGCACGTCGAGCAACGAACAAGGATATTTATCCCCCGAAACCTCG
CCTGCGGGTGTCTCGACAATTGTGCAATTCCGAGGCTATGGCCTCGTGCC
TGGCGTATTGCCTCCCCTTTTCACGCAAACCTAACCCGTGCTCTATCGCG
GCTAAGCATGGTTGAGAAGGAATATCCCCCCTTAATCCCTCCCATCCCCT
ACACATGCGCTTTCCTTGCCGTGTATTCCCCAGAAACGCCGTCCAAGCGT
ACCTGTCACCAACGCTAGAGTACCACAACAGCGGCGGAGGCAACAGCGAC
AGGTCCCATCGACACACCCGAAGCCTAAGCCCAACCGCTGGGCAGTACCG
CAGCCGGTGGTGCTCCCCCACGGCACCGGCAAGTGCACCTGGTAACAACA
ACAGCGATCATGGCAGCAGCGGTGTTGCTGGTGCTAGTACGGTCTCTTCA
AGTCCCAAGACGGGTGTCGCCGAAAAGGGAGGAGTTCCGCCGCTTTTGCT
TGCCCCGTCGGAATGGGGGATCGGGCTTGGCGGGGAGTGGGTCTCCGCTC
GAGGGAAGCGCATGGTCCGAGGTTCGTTTTCGCTGGAAAACGTTTACTTC
GGAATGCGTTTTGCAGGGCACACTCTCTGATTCAAGCCTTGTCTGGTGGA
CCAAGCTTCTCCTACAACCCACGGACTGCCATGACAACGGCGATCGATCT
TAGTTGGAACAGTTCTCCGATGATCCGACGACCGAGTTCTGTGATGATTG
TGTGGATTGTGTGGCAATGAATTCATCCTGCCACGCAAGTTGCTTTCGAT
GGCAACTCGTCCTGCGAAGACGAAGTACTCCGATACAAAAGCTCTCCCGC
AGCACGTCTTCCGAGAACAAACGTCAATTCGGCGACAATGATCGAGAGAG
TCCGTGGTCGCAAATAGAACACACGATAACTGCACCACGTTCCAGAAAAG
AGTACCTGAGAAACTTGTGTACGTTGCAATCCGTTGGAAGATGAGATCTA
CTCATGTAAACAAGACTTCTGGTCTTACGACCATAGTCTGGGACAGTTCG
CTCAATCGCGTGCCTCCCTCAGAGTAAAAACATTCATTTCCCTCAAGTTA
ACAGCTGGTGGAATTTGCTATTTCGTTCGCGCGCGACGGGTTGGGCAATG
CATGCAACCTTGCAAACACCTACCGTACAAGTCCATGTTTAGTGCCGGTA
TGTGCCCAGAAAGTTCACGCTAGATCGGATCGGCACTCTTCGAAGTACTG
ACAAGACTTGAAAGTTCAGTCTGGGCCCGCCGAAATCACCGGCACTATTG
TACCGAGTACCGGCACTAGACAGGGACCTCTACTGTATTGATTGGTGGGT
GTTTCAAAAAAATGAGATCGTGCCTGCCTTAAGAGTGTCTGACGTTTTCT
CGCGCGTATGTACCCTTCAATCGTGTTTTTGTTTGTGATGCAGCCTCCGG
TCGAGTCTCGCTCACATGGTCCGATATCCGGGGCAACACGCTTCTTCACC
TCGCCGCGCAGCACAATGACATCGCTCTAGCCGAGGTAGAGAGAAGGGAA
AAGGGGCTGTGATCCTCTCCCCTGGGTCATCGTCGATGTCGTTGTTGTTA
TTGCTGTTCCTGCTGTTGTTGTTGTTGTTGTTGTTGTTTTTGTTGTGGTT
GCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGTTGTTGTTGCTGTTGTTGC
TGCTGTTGCTGCTGTTGTTGTTGTTGGTGGTGGTGGTGATTGCTGTTGCT
ATTGCTGTTGTTGATGGTGTCATCATCTTTGTCACCATCGTCGTCACTAC
CCCACAAGGCGTCCAAGTCTCCACATAAACAATGCCCTGACCTTTCTCGA
ACAACCACTGGTTTCAACCGGATTGTGGAAGTTCGGGGAAAGCTAACACT
GTAGAGACACGCAGAATGCAGAGGTGCTGGGGATTACGTACGAACTTGGT
GGTCAGACAGGTACGCCAAGCTTTCGTGCGGGATGAGCTTCACCTCTGCG
CGTGTCTAGGTGTCTATCTGTAGTTCCATCTGTCTACCGTCGTGCCCCTG
GATCGTTCTCTACTGAACTTGGTCTGCCGTTACGTGGTTGCCGCTCGTTG
TTTGTCCCACGTTGATCCTGCTCATCATTCTCCGCGCAGGCCGTGTTGGA
GTGCGAGGAAAGAAGAAAGAGGGCCCTGGAGAAACGAGACAGGAGGAGAG
AACGGGTTCTGGTACGTTTCCAAGTGGTTGTGATTCAAACACCGCCCTAA
AGACACGAAGGCCCGTTTCTCTGATTCTCTTCTTTGACAACATTTCCGGA
TGGGATTTTCTTCGATACTGTTATACGACAGTGTTTCAAGAAAAAATTCC
GCCCTGCCTCAACGCCCACCTGACCGCGAACGTCTGTAGTCCAATCCAGC
CATTATCTATGGGGGAAAGCTGACTTGGCGCGACACCATGCTTTGCCAGG
GGGTAGCACCGACCACTAAGGACGGTGCACCCAACTACCCGCAACTGCTT
CGCCCTGCGATTCCTCGGTACCTTCTCCGCACGAATTTCCTCGCAAGTTC
CTCCCGAAGTCCGTTCATCGACGTCTAAATTCTCCCGTCGCCCTCTCTTT
CTCTTTTTCTCTCTCTCTCTAGCCCTCTCTCTGTGGCCCTCTCTCTCTGT
CTAGAAATACACATTCGGTGATTAACGTGAAGACAACAACAATGACAACA
TAAAACTACCCTCCGAAGAAAGACCTAATCTATCGAGACGACACCCCGTT
CTCTTGGACAGGAGCGAGCGCGTCGGTGGAACGAAAGAACCCTGAAAGAA
GCGGCAGACGGGAAGCTCGCGGTAAAGCCGCCCACGCTCAAGAGCAAAGA
CATCCTCAAGCGCATCAAGGTGACTTCGACTCGCGGCACCATAAACCCCA
CTCCAAGCCTACCTCACGCCGGAAGAGACCTTCAGGCGGACTGGTGTGGT
GCTGACACAAATCCCTGGTTAGCAACAACGGCACATTGTCGCGGCGATGG
GACCGATTTCAACCCCAATAGCTAGTCCTCCTCGGAACTAACTCATCTTC
AGAGTAGATGAATCGGCTGGTCCAGGTGGCGAAACTCGCCGAACTCAGCC
TCAACTTCCAGCCGTAGCCCTCACGGAGGACAGAGACTGTACCAGGTTTG
AGTCATATTTTTGCTGAAGATAACATTTTCCAGCTGTTTGGCCCCAAGCC
TAGCCCTTGTTCCGCGTCTTAGCTCTACCGCTCCCTGGCTCAGCCTTTTA
ATCATCCTGATGCTTGACGGGGGCTTGCTATCGCTCAGCGTAACCCTTGA
CGTCCGCATCGAAACGCACGAGTTAGAATGGTTTTACGTACTGTAATAGG
ACAACAACAACAGCAACAACAGCAATAACAGCCACACACGACCAACCCGA
AAGGAAAAGCTGTTATCTACATTGTGTGTCATATTTGTTTTCAGCAAGAG
CGGGCGGAGCAGGAGAAAACTACCAACTTTGGAGCCAACACACCCTCTGC
TAGTGCCGGTGCCGGTGTCCCCGGTGATGCTAGCGGCGGAGGTAGCGCGG
GGTCATCGAACAAGGTAAATTTTGTCCGTACGTCGTACATCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9488:698..5841+

>mRNA_Ecto-sp13_S_contig9488.21105.1 ID=mRNA_Ecto-sp13_S_contig9488.21105.1|Name=mRNA_Ecto-sp13_S_contig9488.21105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1401bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9488:698..5841+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGCTTTCACCTTGCCTCGCCTGAGCCCGCAACTCGGCGGGGTTTCGCA
CTCTTTCGGTAGGGAAGTCAGTGCCGGTATGGCGTCAAAGAAAAAAGTGT
GGGCGAAGGTAGTCGACGATCGAAACTCTGCGACCAGGGGCAAGAACAAA
CGCGGCGGCGGTGGTGATAACATTGGCCGAGCAACGCAGAGTTTCCCTCT
CACCCCACCCGCACCACTGAACCGGTTGTTTGGGGACGATGGTGATAGCG
CCTACGACCTAGATGGTGACGATATTCATGACGTGAGTAGTTGGCAACAA
CCCACGTACGGCAAAAACACACAGGACATGACTTGTGACACGATGGGAGC
TCCTCCCAACGCAGAGTCCGGTGACCAGAGAAACACGACTCCGGCCAACG
GCGGGGATCAAGCCCCCGAGCTTGTTGAGGTAGATGCCAGCACAGCGGAT
TCTATGGCGCGAAGAAACAAGAGTGACATGCGTAGCAGCGACAGTGAAGG
GACAACGGGAAGGACAAGAGGAAGGTCTTCGGCTAGGGAGAGGGAGGCCA
GAGCTTCGAGCGGTGAAAGTTTCGCAACCGGAAGAGCAGCGACACGGCTC
AGACACCCTCGAGACCCTGCCTCACCCGAAACCGCGTACAGAAACGCCGT
CCAAGCGTACCTGTCACCAACGCTAGAGTACCACAACAGCGGCGGAGGCA
ACAGCGACAGGTCCCATCGACACACCCGAAGCCTAAGCCCAACCGCTGGG
CAGTACCGCAGCCGGTGGTGCTCCCCCACGGCACCGGCAAGTGCACCTGG
TAACAACAACAGCGATCATGGCAGCAGCGGTGTTGCTGGTGCTAGTACGG
TCTCTTCAAGTCCCAAGACGGGTGTCGCCGAAAAGGGAGGAGTTCCGCCG
CTTTTGCTTGCCCCGTCGGAATGGGGGATCGGGCTTGGCGGGGAGTGGGT
CTCCGCTCGAGGGAAGCGCATGGTCCGAGCCTCCGGTCGAGTCTCGCTCA
CATGGTCCGATATCCGGGGCAACACGCTTCTTCACCTCGCCGCGCAGCAC
AATGACATCGCTCTAGCCGAGGCCGTGTTGGAGTGCGAGGAAAGAAGAAA
GAGGGCCCTGGAGAAACGAGACAGGAGGAGAGAACGGGTTCTGGAGCGAG
CGCGTCGGTGGAACGAAAGAACCCTGAAAGAAGCGGCAGACGGGAAGCTC
GCGGTAAAGCCGCCCACGCTCAAGAGCAAAGACATCCTCAAGCGCATCAA
GCAAGAGCGGGCGGAGCAGGAGAAAACTACCAACTTTGGAGCCAACACAC
CCTCTGCTAGTGCCGGTGCCGGTGTCCCCGGTGATGCTAGCGGCGGAGGT
AGCGCGGGGTCATCGAACAAGGTAAATTTTGTCCGTACGTCGTACATCTG
A
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