mRNA_Ecto-sp13_S_contig948.21095.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig948.21095.1
Unique NamemRNA_Ecto-sp13_S_contig948.21095.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig948.21095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig948contigEcto-sp13_S_contig948:14078..14762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size200
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-25_001600.1
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464215.7829087-UTR-Ecto-sp13_S_contig948:14077..141091681464215.7829087-UTR-Ecto-sp13_S_contig948:14077..14109Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig948 14078..14109 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464215.793404-CDS-Ecto-sp13_S_contig948:14109..141981681464215.793404-CDS-Ecto-sp13_S_contig948:14109..14198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig948 14110..14198 -
1681464215.803043-CDS-Ecto-sp13_S_contig948:14683..147621681464215.803043-CDS-Ecto-sp13_S_contig948:14683..14762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig948 14684..14762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig948.21095.1prot_Ecto-sp13_S_contig948.21095.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig948 14110..14762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig948.21095.1

>prot_Ecto-sp13_S_contig948.21095.1 ID=prot_Ecto-sp13_S_contig948.21095.1|Name=mRNA_Ecto-sp13_S_contig948.21095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
MITPAVEVDAVLTSAPALIRRMVGEALVIELLTPSPPPPACDEQLVAASW
GRRYQ*
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mRNA from alignment at Ecto-sp13_S_contig948:14078..14762-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig948.21095.1 ID=mRNA_Ecto-sp13_S_contig948.21095.1|Name=mRNA_Ecto-sp13_S_contig948.21095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=685bp|location=Sequence derived from alignment at Ecto-sp13_S_contig948:14078..14762- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATAACGCCTGCGGTCGAGGTTGACGCAGTATTGACCTCAGCCCCAGC
CCTCATTCGACGTATGGTCGGGGAAGCGCGTTCATAGGCCCTGATTCCAA
TTGATCGGGAACTGTCATCATGAGTGAAAAGAGGATGCAAGAGGTGAGAG
ATGTCCGGACATCATGCAAAAAGAGAAGCTAAAAATCAACTCGAGAGGCT
GGTTGTCCCTTAAAAACAAAGATTGACCTACCGTTCGGGCGCTGTTGTGT
TTTTTGTCCTGTCTTCAAATGGGAAACGCCCACAGCAGAATTAGTCTAGG
CAGAAGTCAGACATATTTCAATGCGTGTGGATCGATGTGCGTGAAGCAAG
TGTGGAGACGTTCAAGACTGTTTCAAAATGAGTGGTTATCCAAATATCGC
CTGCGGGTTCCACCAGAGCAGGGCTCTCGCAATCGAAGGCAGGACCTGTG
ATCCTGCTCGCCAAAGCTGTAGTGAACCGCCACCGCCATCACAGCTACCG
TTGACTTGCTGCCACCGCTCTTGCTGAAGCTGCTGCTGCTGCTTTCCCGT
GTGCTCTTTGTCAGTTGTTATCGAACTTCTTACACCGTCTCCGCCGCCGC
CAGCTTGTGACGAACAACTCGTGGCCGCTTCGTGGGGACGACGGTACCAA
TGAGCTGCATTCAAGCGCAACATATCTGTCTTGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig948:14078..14762-

>mRNA_Ecto-sp13_S_contig948.21095.1 ID=mRNA_Ecto-sp13_S_contig948.21095.1|Name=mRNA_Ecto-sp13_S_contig948.21095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig948:14078..14762- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATAACGCCTGCGGTCGAGGTTGACGCAGTATTGACCTCAGCCCCAGC
CCTCATTCGACGTATGGTCGGGGAAGCGCTTGTTATCGAACTTCTTACAC
CGTCTCCGCCGCCGCCAGCTTGTGACGAACAACTCGTGGCCGCTTCGTGG
GGACGACGGTACCAATGA
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