mRNA_Ecto-sp13_S_contig9476.21090.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9476.21090.1
Unique NamemRNA_Ecto-sp13_S_contig9476.21090.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9476.21090.1 vs. uniprot
Match: A0A6H5J860_9PHAE (SUN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J860_9PHAE)

HSP 1 Score: 744 bits (1920), Expect = 1.440e-267
Identity = 394/430 (91.63%), Postives = 398/430 (92.56%), Query Frame = 1 
Query:    1 EVEGVANTLQMEARSFEEFRARRAGALKEIEEIAGRLRSSVLEVEELEALGKAVHEDNSGDAGLTTEVTRAQESLRDLHRSVTDELGSFQRRLEEQAGTMREVRDGMARFSQLAERREDRIAAAVHMKLESKLDDNLADLKDFYHTVEEHVDSLSPDVMTASDLEALLESAAAQPSERTGTSRGGDDDAAEHQIRALSKAAVDLAVKTRVLGSGSRDGGDESXXXXXGCVSEGVVREEVDVAIGKLMADGTGMRDYANAALGGKVLTSKGMVSDTYTPSSWWGPSRYWHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLPEKITVDGVSVEHVSRMVTTESGSAPKELEVWGMRNKKDKKPAKLGSAVYDVDGRPIQTFPIEPLGVQFNLIQFKILSNWGNPDYTCLYRLRVHGRERESSPA 1290
            EVEGVANTLQMEARSFEEFRARRAGALKEIE               LEALGKAVHE NS DAGLTTEVTRAQESLRDLHRSVTDELGSFQRRLEEQAGTMRE+RDGMAR SQLAERREDRIAAAVHMKLESKLDDNLADLKDFYHTVE HVDSLSPDVMTASDLEALLESAAAQPSER GTSR GD DAAEHQIRALSK AVDLA+KTRVLGSGSRDG DES     GCVSEGVVREEVDVAIGKLMADGTGMRDYANAALGGKVLTSKGMVS+TYTPSSWWGPSRYWHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLPEKITVDGVSVEHVSRMVTTESGSAPKE+EVWGMRNKKD  PAKLGSAVYDVDGRPIQTFPIEPLGVQF LIQFKILSNWGNPDYTCLYRLRVHGRERESSPA
Sbjct:  111 EVEGVANTLQMEARSFEEFRARRAGALKEIEXXXXXXXXXXXXXXXLEALGKAVHEGNSRDAGLTTEVTRAQESLRDLHRSVTDELGSFQRRLEEQAGTMREIRDGMARVSQLAERREDRIAAAVHMKLESKLDDNLADLKDFYHTVEGHVDSLSPDVMTASDLEALLESAAAQPSERIGTSRDGDGDAAEHQIRALSKVAVDLAIKTRVLGSGSRDGSDESGGGG-GCVSEGVVREEVDVAIGKLMADGTGMRDYANAALGGKVLTSKGMVSETYTPSSWWGPSRYWHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLPEKITVDGVSVEHVSRMVTTESGSAPKEIEVWGMRNKKDNNPAKLGSAVYDVDGRPIQTFPIEPLGVQFKLIQFKILSNWGNPDYTCLYRLRVHGRERESSPA 539
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BLAST of mRNA_Ecto-sp13_S_contig9476.21090.1 vs. uniprot
Match: D7FIC3_ECTSI (SUN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC3_ECTSI)

HSP 1 Score: 694 bits (1791), Expect = 5.780e-250
Identity = 376/413 (91.04%), Postives = 380/413 (92.01%), Query Frame = 1 
Query:   31 MEARSFEEFRARRAGALKEIEEIAGRLRSSVLEVEELEALGKAVHEDNSGDAGLTTEVTRAQESLRDLHRSVTDELGSFQRRLEEQAGTMREVRDGMARFSQLAERREDRIAAAVHMKLESKLDDNLADLKDFYHTVEEHVDSLSPDVMTASDLEALLESAAAQPSERTGTSRGGDDDAAEHQIRALSKAAVDLAVKTRVLGSGSRDGGDESXXXXXGCVSEGVVREEVDVAIGKLMADGTGMRDYANAALGGKVLTSKGMVSDTYTPSSWWGPSRYWHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLPEKITVDGVSVEHVSRMVTTESGSAPKELEVWGMRNKKDKKPAKLGSAVYDVDGRPIQTFPIEPLGVQFNLIQFKILSNWGNPDYTCLYRLRVHGR 1269
            MEARSFEEFRARRAGALKEIE               LEALGKAVHEDNSGDAGLTTEVTRAQESLRDLHRSVTDELGSFQRRLEEQ+GTMREVRDG AR SQLAERREDRIAAAVHMKLESKLDD LADLKDFYHTVEEHVDSLSPDVMTASDLEALLESAAAQPSERT TSR G  DAAEH+IRALSKAAVDLAVKTRVLG GSRDG    XXXXXGCVSEG VREEVDVAIGKLMADGTGMRDYANAALGGKVLTSKGMVSDTYTPSSWWGPSRYWHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLP+KITVDGVSVEHVSRMVTTESGSAPKELEVWGM+NKKDKKPAKLGSAVYDVDGRPIQTF IEP G Q  LIQFKILSNWGNPDYTCLYRLRVHGR
Sbjct:    1 MEARSFEEFRARRAGALKEIEXXXXXXXXXXXXXXXLEALGKAVHEDNSGDAGLTTEVTRAQESLRDLHRSVTDELGSFQRRLEEQSGTMREVRDGTARVSQLAERREDRIAAAVHMKLESKLDDILADLKDFYHTVEEHVDSLSPDVMTASDLEALLESAAAQPSERTDTSRDGGGDAAEHRIRALSKAAVDLAVKTRVLGGGSRDGX-XXXXXXXGCVSEGAVREEVDVAIGKLMADGTGMRDYANAALGGKVLTSKGMVSDTYTPSSWWGPSRYWHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLPKKITVDGVSVEHVSRMVTTESGSAPKELEVWGMKNKKDKKPAKLGSAVYDVDGRPIQTFRIEPPGEQIELIQFKILSNWGNPDYTCLYRLRVHGR 412
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BLAST of mRNA_Ecto-sp13_S_contig9476.21090.1 vs. uniprot
Match: A0A482W613_9CUCU (Sad1 UNC domain containing protein n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482W613_9CUCU)

HSP 1 Score: 133 bits (335), Expect = 1.660e-31
Identity = 80/205 (39.02%), Postives = 115/205 (56.10%), Query Frame = 1 
Query:  682 GCVSEGVVREEVDVAIGKLMADGTGMRDYANAALGGKVLTSKGMVSDTYTPSSWWGPSRYWHGAGVENGVG-----PVES---VISEGSSLGACWAMSGSEGLVTIQLPEKITVDGVSVEHVSRMVTTES--GSAPKELEVWGMRNKKDKKPAKLGSAVYDVDGRPIQTFPIEPLGVQFNLIQFKILSNWGNPDYTCLYRLRVHG 1266
            G ++E  +++ V   +    AD TG+ DYA  ++GG ++T++   S             Y  G  V + +G     P  S   VI  G + G CWA     G + I+L  +I V+  S+EHVSR++  E    SAPKE EV+G+ N+ DK+P K+G  VYD DG PIQ F  +  G+ F +++ +I SN GNP+YTCLYR RVHG
Sbjct:  178 GSITEEQIKKVVKSTLMIYDADKTGLVDYAMESMGGHIVTTRCTES-------------YHTGTAVISVLGIPLWYPSNSPRIVIVPGINPGECWAFQNFPGFIVIKLATRILVEAFSLEHVSRLLVPEGRIDSAPKEFEVYGLDNENDKEPVKIGEYVYDYDGDPIQYFAAQQHGLIFTMVEVRIKSNHGNPNYTCLYRFRVHG 369
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BLAST of mRNA_Ecto-sp13_S_contig9476.21090.1 vs. uniprot
Match: A0A6J2X2Z0_SITOR (uncharacterized protein LOC115874360 isoform X1 n=3 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2X2Z0_SITOR)

HSP 1 Score: 136 bits (342), Expect = 6.600e-31
Identity = 79/208 (37.98%), Postives = 118/208 (56.73%), Query Frame = 1 
Query:  682 GCVSEGVVREEVDVAIGKLMADGTGMRDYANAALGGKVLTS---------KGMVSDTYTPSSWWGPSRYWHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLPEKITVDGVSVEHVSRMVTTES--GSAPKELEVWGMRNKKDKKPAKLGSAVYDVDGRPIQTFPIEPLGVQ-FNLIQFKILSNWGNPDYTCLYRLRVHGR 1269
            G +SE  +++ V   +    AD TG+ DYA  ++GG+++T+         K +VS    P   W PS                + I  G + G CWA     G V I+L  ++ ++  S+EH+SR++  E    SAPKE EV+G+  + D++P  LG+  YD DG P+Q FPI+  G+Q F++I+ +I+SN GNP+YTCLYR RVHGR
Sbjct:  629 GGISEDEIKKVVKGVLAIYDADRTGLVDYAMESMGGQIVTTRCTELYHYGKAVVSILGVPL--WYPSN------------SPRTAIRPGMAPGECWAFQNFPGFVVIKLSARVRLEAFSLEHISRLLVPEGKIDSAPKEFEVYGLVQENDREPVLLGTYTYDYDGEPLQFFPIQTPGLQVFDMIELRIVSNHGNPNYTCLYRFRVHGR 822
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BLAST of mRNA_Ecto-sp13_S_contig9476.21090.1 vs. uniprot
Match: UPI0008746D54 (sun domain-containing protein 1 n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI0008746D54)

HSP 1 Score: 135 bits (340), Expect = 1.170e-30
Identity = 76/206 (36.89%), Postives = 117/206 (56.80%), Query Frame = 1 
Query:  682 GCVSEGVVREEVDVAIGKLMADGTGMRDYANAALGGKVLTSKGMVSDTYTPSSWWGPSRYWHGAGVENGVG-----PVES---VISEGSSLGACWAMSGSEGLVTIQLPEKITVDGVSVEHVSRMVTTES--GSAPKELEVWGMRNKKDKKPAKLGSAVYDVDGRPIQTFPIEPLGVQFNLIQFKILSNWGNPDYTCLYRLRVHGR 1269
            G VSE  ++E V   +    AD TG+ DYA   +GG++LT++                 Y +G  V + +G     PV S   +I+   S G CWA     G V I+L  ++ V+  S+EH+S+++  +    SAPK+ EV+G  ++ DK+P  LG+ VY+ D  P+Q FP++  G  F +++ +I+SN GNP+YTCLYR RVHG+
Sbjct:  610 GSVSEDRIKEIVKSTLAIYDADRTGLVDYAMETMGGQILTTRCT-------------ENYHYGKAVVSVLGIPLWYPVNSPRTIITPSISPGECWAFQNFPGFVVIRLSNRVQVEAFSLEHISKLLVPDGKIDSAPKDFEVYGFTSENDKEPVLLGTYVYNYDKEPLQFFPVQSEGHVFEIVEIRIISNHGNPNYTCLYRFRVHGK 802
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BLAST of mRNA_Ecto-sp13_S_contig9476.21090.1 vs. uniprot
Match: A0A653DXV3_CALMS (SUN domain-containing protein n=1 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653DXV3_CALMS)

HSP 1 Score: 127 bits (319), Expect = 3.720e-30
Identity = 77/198 (38.89%), Postives = 110/198 (55.56%), Query Frame = 1 
Query:  703 VREEVDVAIGKLMADGTGMRDYANAALGGKVLTSKGMVSDTYTPSSWWGPS--RYWHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLPEKITVDGVSVEHVSRMV--TTESGSAPKELEVWGMRNKKDKKPAKLGSAVYDVDGRPIQTFPIEPLGVQFNLIQFKILSNWGNPDYTCLYRLRVHGRERESS 1284
            ++ +++ A+    +D TG  DYA  A GGKV++      +     + +G +     HG G          ++    S G CWA+ GS+G   I+L  ++ VD V+VEH+S+ +  T E  SAPKE  VWGMRN KD+   +LG+  YD DG  +QTFPI      F  +Q ++LSN GNP+YTC+YR RVHG     S
Sbjct:   86 IKNKIEEALETFSSDKTGRADYALEASGGKVVSLLHGTENFERAKTLFGITLCEGTHGPGA---------MLHVDMSPGNCWAIKGSQGGAVIKLLGRVRVDAVTVEHISKNISPTGEVTSAPKEFVVWGMRNPKDRG-IRLGTFSYDADGHLVQTFPISN-DHYFEFVQLEVLSNQGNPEYTCIYRFRVHGELERGS 272
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BLAST of mRNA_Ecto-sp13_S_contig9476.21090.1 vs. uniprot
Match: A0A8J6H8V3_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6H8V3_TENMO)

HSP 1 Score: 134 bits (336), Expect = 5.250e-30
Identity = 76/205 (37.07%), Postives = 119/205 (58.05%), Query Frame = 1 
Query:  682 GCVSEGVVREEVDVAIGKLMADGTGMRDYANAALGGKVLTSKGMVSDTYTPSSW--------WGPSRYWHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLPEKITVDGVSVEHVSRMVTTES--GSAPKELEVWGMRNKKDKKPAKLGSAVYDVDGRPIQTFPIEPLGVQFNLIQFKILSNWGNPDYTCLYRLRVHG 1266
            G +S+  +R+ V  A+    AD TG+ DYA   LGG+++T++   +++Y+ ++         W PS           + P   VI+ G + G CWA     G + I+L  ++ ++  SVEHVSR++  E    SAPKE EV+G+ ++ D++  K+G  VYD DG PIQ F  +  G+ F +++ ++ SN GNP+YTCLYR RVHG
Sbjct: 1293 GSISDEQIRKVVQSALRIYDADRTGLVDYAMEPLGGEIVTTR--CTESYSGTAVISVLGIPVWYPS-----------ISP-RVVITPGINPGECWAFQNFPGFLVIKLAARVRLEAFSVEHVSRLLVPEGKIDSAPKEFEVFGLNSENDREAVKIGEYVYDYDGDPIQYFAAQETGLVFTMVEIRVKSNHGNPNYTCLYRFRVHG 1483
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BLAST of mRNA_Ecto-sp13_S_contig9476.21090.1 vs. uniprot
Match: UPI000C251E21 (uncharacterized protein LOC111510856 n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C251E21)

HSP 1 Score: 132 bits (332), Expect = 1.190e-29
Identity = 76/204 (37.25%), Postives = 117/204 (57.35%), Query Frame = 1 
Query:  688 VSEGVVREEVDVAIGKLMADGTGMRDYANAALGGKVLTSKGMVSDTYTPSSWWGPSRYWHGAGVENGVG-----PVES---VISEGSSLGACWAMSGSEGLVTIQLPEKITVDGVSVEHVSRMVTT--ESGSAPKELEVWGMRNKKDKKPAKLGSAVYDVDGRPIQTFPIEPLGVQFNLIQFKILSNWGNPDYTCLYRLRVHGR 1269
            +SE  V+  V  A+    AD TG+ DYA   +GG++LT++                 Y +G  V + +G     PV S   +I+   + G CWA     G   I+L ++I V+  S+EH+S+++    E  SAPK+ EV+G+ ++ DK+P KLG  VY+     +Q FP++ +G  F +I+ ++LSNWGNP+YTCLYR RVHG+
Sbjct:  568 ISEEHVKRIVKNALLIYDADKTGLVDYAMETMGGQILTTRCT-------------ENYHYGKAVVSVLGVPLWYPVNSPRTIITPSINPGECWAFQNFPGFAVIRLSKRIKVEAFSLEHISKLLVPNGEIDSAPKQFEVYGLTDQDDKEPLKLGEYVYEDHKESLQFFPVQNVGHIFEIIELRVLSNWGNPNYTCLYRFRVHGK 758
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BLAST of mRNA_Ecto-sp13_S_contig9476.21090.1 vs. uniprot
Match: A0A835ZD47_9STRA (UNC-like C-terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD47_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.990e-29
Identity = 69/199 (34.67%), Postives = 107/199 (53.77%), Query Frame = 1 
Query:  685 CVSEGVVREEVDVAIGKLMADGTGMRDYANAALGGKVLTSKGMVSDTYTPSSWWGPSRYWHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLPEKITVDGVSVEHVSRMVTTESGSAPKELEVWGMRNKKDKKPAKLGSAVYDVDGRPIQTF--PIEPLG-VQFNLIQFKILSNWGNPDYTCLYRLRVHGRE 1272
            C+S      +V  AI     +    +DYA  A GG+V+  +G+ S T+T +      R+    G+E  VG     IS  +SL ACW M G  G +T++L   I VD +++EH S  ++ +  SAPK   + G+ ++   +P  L    YD+   P Q F  P+ P     F+++  K+L N+G P+YTC+YRL++HGRE
Sbjct:   30 CISLAEAEAQVHTAIDIAYVEPEQPKDYAWRAAGGQVVQKRGLTSATHTRTML---ERWQLALGMEAAVGGPNEAISSDNSLSACWGMDGQSGQLTVKLATAIRVDAITLEHASAQISPDRSSAPKTFHLLGLVDE-SAQPVPLLQGEYDLSASPQQLFRVPVGPYSQTAFSMVTLKVLDNYGKPEYTCIYRLQLHGRE 224
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9476.21090.1 vs. uniprot
Match: A0A8C4FPT7_9TELE (SUN domain-containing protein 2-like n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4FPT7_9TELE)

HSP 1 Score: 130 bits (327), Expect = 3.010e-29
Identity = 80/202 (39.60%), Postives = 117/202 (57.92%), Query Frame = 1 
Query:  682 GCVSEGVVREEVDVAIGKLMADGTGMRDYANAALGGKVLTSKGMVSDTYTPS--SWWGPSRYWHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLPEKITVDGVSVEHVSRMVTTES--GSAPKELEVWGMRNKKDKKPAKLGSAVYDVDGRPIQTFPIEPLGVQ--FNLIQFKILSNWGNPDYTCLYRLRVHGR 1269
            G V+   VRE V  A+    AD  GM D+A  + GG VL S+   S+TY P   S +G   ++   G         +VI      G CWA  GS+G +TI L   +TV  V++EH+ ++++      SAP+E  V+GM +   KK   LG+ VYD DGRP+QTF +E   VQ  +++I+ ++L+NWG+P+YTC+YR RVH +
Sbjct:  401 GYVTANDVREIVQSALSIYRADVIGMADHALESSGGCVLASR--CSETYRPQFLSLFGLPLWYRAEGPR-------AVIQPEVHPGKCWAFKGSQGYITIALSSPVTVTHVTLEHLPKILSPSGHIASAPREFAVYGMTDLDQKKGTFLGAFVYDYDGRPVQTFELEE-SVQGVYHVIELRVLTNWGHPEYTCIYRFRVHSQ 592
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9476.21090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J860_9PHAE1.440e-26791.63SUN domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FIC3_ECTSI5.780e-25091.04SUN domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A482W613_9CUCU1.660e-3139.02Sad1 UNC domain containing protein n=1 Tax=Asbolus... [more]
A0A6J2X2Z0_SITOR6.600e-3137.98uncharacterized protein LOC115874360 isoform X1 n=... [more]
UPI0008746D541.170e-3036.89sun domain-containing protein 1 n=1 Tax=Anoplophor... [more]
A0A653DXV3_CALMS3.720e-3038.89SUN domain-containing protein n=1 Tax=Callosobruch... [more]
A0A8J6H8V3_TENMO5.250e-3037.07Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
UPI000C251E211.190e-2937.25uncharacterized protein LOC111510856 n=1 Tax=Lepti... [more]
A0A835ZD47_9STRA2.990e-2934.67UNC-like C-terminal-domain-containing protein n=1 ... [more]
A0A8C4FPT7_9TELE3.010e-2939.60SUN domain-containing protein 2-like n=2 Tax=Denti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9476contigEcto-sp13_S_contig9476:1..6021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score700.3
Seed ortholog evalue5.6e-199
Seed eggNOG ortholog2880.D7FIC3
Preferred nameSUN3
Model size1293
KEGG koko:K06545,ko:K19347,ko:K21874,ko:K21875,ko:K21876
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0003006,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005637,GO:0005737,GO:0005783,GO:0005789,GO:0005819,GO:0005856,GO:0005874,GO:0005929,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007049,GO:0007059,GO:0007127,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008104,GO:0008150,GO:0008360,GO:0009524,GO:0009790,GO:0009792,GO:0009987,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0019866,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030154,GO:0031090,GO:0031224,GO:0031514,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032878,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034397,GO:0034398,GO:0034504,GO:0034613,GO:0034992,GO:0034993,GO:0036126,GO:0042175,GO:0042802,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043495,GO:0043621,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044821,GO:0045132,GO:0045141,GO:0045143,GO:0045185,GO:0046605,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048609,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051235,GO:0051259,GO:0051260,GO:0051276,GO:0051291,GO:0051303,GO:0051321,GO:0051493,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051651,GO:0051656,GO:0051704,GO:0051726,GO:0061024,GO:0061842,GO:0061982,GO:0065003,GO:0065007,GO:0065008,GO:0070192,GO:0070197,GO:0070507,GO:0070727,GO:0071840,GO:0090220,GO:0090286,GO:0090435,GO:0097223,GO:0097224,GO:0097240,GO:0097729,GO:0098796,GO:0098813,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0106083,GO:0106094,GO:0120025,GO:0120038,GO:0140013,GO:1903046,GO:2000769
Exons11
EggNOG free text desc.cytoskeletal anchoring at nuclear membrane
EggNOG OGsKOG2687@1,KOG2687@2759
Ec32 ortholog descriptionSUN domain
Ec32 orthologEc-11_001360.1
Cds size1263
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04090
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9476.21090.1prot_Ecto-sp13_S_contig9476.21090.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9476 31..6021 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464215.3180745-UTR-Ecto-sp13_S_contig9476:0..301681464215.3180745-UTR-Ecto-sp13_S_contig9476:0..30Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9476 1..30 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464215.3329654-CDS-Ecto-sp13_S_contig9476:30..411681464215.3329654-CDS-Ecto-sp13_S_contig9476:30..41Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9476 31..41 +
1681464215.3515923-CDS-Ecto-sp13_S_contig9476:324..3761681464215.3515923-CDS-Ecto-sp13_S_contig9476:324..376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9476 325..376 +
1681464215.3660078-CDS-Ecto-sp13_S_contig9476:648..7561681464215.3660078-CDS-Ecto-sp13_S_contig9476:648..756Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9476 649..756 +
1681464215.378602-CDS-Ecto-sp13_S_contig9476:1107..11941681464215.378602-CDS-Ecto-sp13_S_contig9476:1107..1194Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9476 1108..1194 +
1681464215.3912523-CDS-Ecto-sp13_S_contig9476:1669..17621681464215.3912523-CDS-Ecto-sp13_S_contig9476:1669..1762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9476 1670..1762 +
1681464215.4027445-CDS-Ecto-sp13_S_contig9476:2362..24761681464215.4027445-CDS-Ecto-sp13_S_contig9476:2362..2476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9476 2363..2476 +
1681464215.4152212-CDS-Ecto-sp13_S_contig9476:3074..33741681464215.4152212-CDS-Ecto-sp13_S_contig9476:3074..3374Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9476 3075..3374 +
1681464215.43238-CDS-Ecto-sp13_S_contig9476:3856..39481681464215.43238-CDS-Ecto-sp13_S_contig9476:3856..3948Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9476 3857..3948 +
1681464215.4462209-CDS-Ecto-sp13_S_contig9476:4439..46231681464215.4462209-CDS-Ecto-sp13_S_contig9476:4439..4623Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9476 4440..4623 +
1681464215.4567835-CDS-Ecto-sp13_S_contig9476:5113..52111681464215.4567835-CDS-Ecto-sp13_S_contig9476:5113..5211Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9476 5114..5211 +
1681464215.4669673-CDS-Ecto-sp13_S_contig9476:5897..60211681464215.4669673-CDS-Ecto-sp13_S_contig9476:5897..6021Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9476 5898..6021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9476.21090.1

>prot_Ecto-sp13_S_contig9476.21090.1 ID=prot_Ecto-sp13_S_contig9476.21090.1|Name=mRNA_Ecto-sp13_S_contig9476.21090.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=421bp
MEARSFEEFRARRAGALKEIEEIAGRLRSSVLEVEELEALGKAVHEDNSG
DAGLTTEVTRAQESLRDLHRSVTDELGSFQRRLEEQAGTMREVRDGMARF
SQLAERREDRIAAAVHMKLESKLDDNLADLKDFYHTVEEHVDSLSPDVMT
ASDLEALLESAAAQPSERTGTSRGGDDDAAEHQIRALSKAAVDLAVKTRV
LGSGSRDGGDESGGGGGGCVSEGVVREEVDVAIGKLMADGTGMRDYANAA
LGGKVLTSKGMVSDTYTPSSWWGPSRYWHGAGVENGVGPVESVISEGSSL
GACWAMSGSEGLVTIQLPEKITVDGVSVEHVSRMVTTESGSAPKELEVWG
MRNKKDKKPAKLGSAVYDVDGRPIQTFPIEPLGVQFNLIQFKILSNWGNP
DYTCLYRLRVHGRERESSPA*
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mRNA from alignment at Ecto-sp13_S_contig9476:1..6021+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9476.21090.1 ID=mRNA_Ecto-sp13_S_contig9476.21090.1|Name=mRNA_Ecto-sp13_S_contig9476.21090.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6021bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9476:1..6021+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGTGGAAGGTGTCGCCAACACCTTGCAGATGGAAGCCAGGTAAATGGT
TCATGTGCCCATTCTTTGTTGCGAGGATACACGCTGTCCGCTAAGCACGG
TGCACAGCAGCTACGCTTGCCGCCAAGTGAAAACGGCCATCTGTCACTTG
TTAAGGAGGACCGCGATGCTCCTCACACGCCTCCCGTTTAGAGCGATATC
CTTGCTTTAAAGCATCTCTGCGTGTGTGTCTCTTGCAGTCCATGCATGGC
TCATAATCCCACCCCTGTCCCGTCTTACCCGCCTTTCTCTGTGGTGTGTG
CCTGCCGCGCTGGTTGCCTTGCAGGAGCTTCGAGGAATTTCGAGCGCGTC
GAGCGGGAGCCTTGAAGGAAATAGAGGTTTGCGCAAAAAAAAAAATGGCG
GGCGACGACTTACCTCGCCGAAACATGACGGTTAATGTTGCCTACATTTG
TCGGATGTCTCCCGCTGAATCATGGTGCTATGCTTCAGGCGGCACACGAC
GACGGAACGGAGGTGTTGAGAGGGGGTGGTAGAGGGCAGAGGCGTTGGTG
GTGTCACACGGGAACGCGGCACAACAGCTGAGGTGCTTGTTGCGAAAACA
TTTCCCACCCCACAAGACTCTAAATCCTAGATGTTGCATGCGGAACAGGA
GATCGCGGGGAGATTGAGATCGTCGGTGCTGGAGGTAGAGGAGCTGGAGG
CGCTTGGCAAGGCGGTGCACGAGGACAACAGCGGTGACGCCGGTCTCACT
ACCGAGGTGCCTCTTTCTACGTGTTCATTTCGGAGTTGGCGTGTGTAGCA
ACAATGTGAGGTCCCGGTGACATGTTCAGGCAGAAAACAACGACCCGGTC
GTGTAAAGCCTTGCCCTCTGCAGTCTATCGACTGCTTTCGTCTCTACCGT
GAGGCCCCACCCGCCGTGGCCATTTCCTGGCCTCACGCGCGGAATCCGTA
GCGCTCTATCAGGGTACACCCGGGTGTTTCGCGGCGGGTGCAGATCCCTA
GAGGTTATGCCGATATCACCACTGGTCGTGCCGTTTGTATGTGTACTGCA
GCCCCTCCCCACCACAAGTCCTCCTCCTCCCACCAACGGCGGTTTCATCG
GGCACAGGTCACGAGGGCCCAAGAGAGCCTTCGCGATCTGCACCGATCGG
TGACGGACGAGTTGGGCAGCTTTCAGCGGCGGCTTGAAGAGCAGGTAACA
CGACACTTGTTCTTGCCAGACCATGCACTAATTGGCGGTCGCCGCCTTTT
TGTCAAAGAACTTTTGTGCTACGCGGGGGAAGAGTCCACTTGCCGCAAAG
CACGGCGGATTACTTCAAGACGCAGCATCCAACTACCGGTAGAGCGCGGC
CCGAACAATTCGTGATTTTGCCGCGTGAGCCGAAACTGGCGTGGATCCTC
CCGCTCGTATGGTTTTGTTCTGTACGGAATTTTCGAATTTTCTCCTGTAT
TGTTCGCCAGGCTTGCGTATTGTACGGTGACGACCCCCGTCTGCTCTTTG
CTTCACGCCCTTTTCCCAGCACCCAACGCCCTGTACCAACACAGCAGTGT
TCTTACGTCTTGGTCATTCCCCAGCCCTGTGAGCCGTACCCTCGTCAACC
TCGTGACGTGGACTCTGTTTGTTGTGTGTTTCGCTTCACCCCACCCGTGT
TTCATGGTGTGGACTGTAGGCGGGGACGATGAGAGAGGTTCGGGACGGCA
TGGCCAGATTCAGCCAGCTCGCGGAGCGCAGGGAGGATCGGATTGCCGCT
GCAGTGCACATGGTGAGCGACATGATGATCCCGCGAACATCAACAAGAGG
GGCGGGTCGCGAGTGGAACTATATCTTATCTTGCTCTGCGTTGCATGCGG
GGGACCATGCAAGAAGAGGCAGTGTTGTTTGTGTTATACTCACGTGTTTT
CGGACGCCGTTGCGGAGGTCTTTTTTTTCGTCCATCACTGTGATTCGGCC
CTCATAGCTCACAGCATTTCTGCGAGATACAAGCTCCAATCTGTGACCAG
TCACGCAGAAAGAAGCGCTCCCTCCCTAAGGCACCCTGCCCAACCGTCCT
GCGGTGGTTACCTTGGCGTCTTGCGAAAAGAGATACATCCCGCCGATGAT
ACGGGCTGCTCCGAGTTGGCCAGTCCTCCCCCCGAGCCGCAAGTTAGAGA
CGGGATGATAGACCGCCGCCGTTGCGGGGGTGGTGCACTTCACCACTGCC
TTGGTGTTGCTTGGGTTCGACGGCGCAGGATACGTGCGGCGTGAAGTGCA
TCGCGTGCGAAATACTGTACATTCTCGATGACCCTCGTGATGTGTGTTCT
GCTCTTGCTATCGTCGTCGTCGTCGTCATCCTCGTTGCTGTACGCGATGG
CGGCATGAACAGAAACTAGAATCAAAGCTGGACGACAACCTGGCCGACCT
GAAGGACTTCTACCACACGGTGGAAGAACACGTCGATAGTCTGTCTCCGG
ACGTCATGACCGCTTCAGACCTTGAGGTATTGAAACATCACACGGGCGGC
GTTGATGTGCTAGAAGGGCTGTTGGGGTATTTTTTCATTTTTATTTTTAT
TTCAGCGCTCACAGCACTTGTGCTGTTTATTCCAACCCGTGGTCACACAG
AAGAGCTCCTCTCTACCCTCCCCTCCTGCGGTACTTCGCCTTCAATTTTT
AATGCGAGAAGAGTTCAGCACTCTCTTCCCTCTGTGTACACACGAACTAG
CGCTATCCACTTCGCCAGGAGCGGAAGCGAGAGAAAAACTCACTTAGAGG
AAAAGCTCGCCTACGCCGGGATTCGGACCCCTGACCTGACCTCTAGACGG
TTACGTGGCTGCCAACTTGACCACCGGGGCGACCGGTTCGCCCTCACAGA
AAAGCAAGAGACACGAAGAATGGAAGTAACAAGTTCAAATGCGCTGGGAG
TTATCGAATGATTAAAGGGGGGGCGGCCGTGGGCAGATTTGAACAGGGTG
ACTCCAAGCAAGATCGCCGCGTGGGATTTGACCAATCACCCGAAGCCCTC
ACCCCTCGTGCATGACTTTGTGAACTCAAAATAGTTCAAGATATATCACC
TCCCTCTGACCTTTTTTCTCACAGGCGTTGCTCGAAAGTGCTGCGGCGCA
ACCCTCGGAGCGAACCGGCACAAGCAGGGGCGGCGACGACGACGCTGCGG
AGCATCAAATTCGAGCCCTGTCCAAGGCGGCGGTGGACCTCGCGGTAAAG
ACGAGGGTGCTCGGAAGCGGTAGCCGGGACGGCGGCGACGAAAGCGGCGG
AGGAGGAGGAGGGTGCGTCTCCGAGGGGGTGGTGAGGGAGGAGGTGGACG
TGGCGATCGGGAAGCTGATGGCGGATGGTACAGGGATGCGGGACTACGCC
AACGCCGCCCTCGGCGGCAAAGTGGTGAGGAGAAGAATTGTATCGGGTTA
GTTAACCCACAACGTAGCATTCATTGTTCAAGCGACAGACATGTTTGGGC
TGAGGAGAAGGCACTCAGGCCCTAGAGAGCAGTGAAACACGACTTAAGGT
TCGAGGGGCGATTGATTTGCCTAAACGCCGCTCCTGATGAATTCGGGTGG
AGGCTGCCGTGTTCGTGCTAAACCTTCGCCTTGTGACACTGCCGTTCGAA
AACCGAATGTATTACGCCGACGAGAGTCGTTTACGATGCCGCTGGAACAC
CCTTGTGGTATACGCCGCTCCGTATCGTTTTCGCGCGCGCACCTTACTCG
AGTCCACCGTGGCTTCGCTTTGCGTCTGAACGTTGGCGATGATCGACGCT
CAAACGGTATAGCCCCGCTCACCCGTCATGTAATTCGCCCGTCCTCGCCC
TCGATCCGCCGCACATGACAACGGTCGACGTTGATGCTGACGCTGACGTG
ACGCAGCTCACGTCCAAGGGGATGGTGTCCGACACATACACGCCGTCGTC
TTGGTGGGGACCCAGCCGGTACTGGCACGGAGCCGGGGTAGAGAACGGGT
GAGAAAGCACGGACCTGTGCGCACACAGCGCTCACAACGCTCGTGCGGGG
GTTGCGTTAGAGCATTGGTCTTCGGCCGCTGGAAAAATGTGCTGCGAGTC
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTCTCGTTTGTTGCCCAAGCCCCCTCCATCCTGGAGACCGTCGCC
TTGCCCCCCCTCTTATCCCGCACCGTGATACGGCCTCAGCGTCGGCCCGG
TGGAGTCGGTTATTTCGGAGGGCAGCAGCCTGGGCGCCTGCTGGGCCATG
TCCGGGAGCGAGGGCCTCGTGACCATCCAGCTTCCCGAAAAGATCACGGT
GGACGGAGTCTCCGTGGAGCACGTGTCTAGGATGGTCACTACGGAGAGTG
GGTCGGCACCTAAGGAGCTCGAGGTACAGCAGTTTTACCACGGGGGTTGT
TCTGTTATATCTTTTGGGGGTAGATCTTATTCCCGGCTCCCAGTCGATTG
GATGTTATTGTATGCATACGGTACAGTGTGGGGGGGTCAACAATGCCGGT
TAAATGGGGAACCGGTGGTCCTGTATACATAGCGCTGGTGAAACTGCAGG
GCGCAGACTGAATCACCTAGTAATTCTGTACATGACATAGCGCCGTTCCC
TCTGAATAACGCAGGTCGATGCTCCGGGCATAAAACGGCGTTATTGAGGG
CCCTCCGCTGTAGTAGGGCTTTCGGGTGGTGTGACTGGTCGGGTTGATTT
GGCTGGTTCTGCATTCGGCTGTTAGCTTACGCTCGTGCGATGGGCCAACT
TCTAGAATATCGCGTCACCTTTTTTTTTTTGCTCGGTACATTGGTACGAT
GGGCCAACTTTAATCGCCTCTGCAACTTGTCGCTCGGCACTGGCTGTACA
TTGTTCTCGATAGGTGTGGGGCATGAGGAACAAGAAAGACAAGAAACCGG
CGAAGCTCGGGAGCGCCGTGTACGACGTTGACGGGAGGCCAATCCAGACT
TTCCCCATTGAGTGAGTTCGTTGGTTGCGGTCAAGCGTTGTCGCGGTGCA
CTCACTGCCCTACCCAAGCGCAGCATGCACCGACACAGGTCGTTACAAGG
TAGAAGCAGGCATCAAGGTTCATTAGAAGCAGGCATCAAGGTTCATGCGA
CAAAAATCGTGCGGCAAACCGTCAAATCTTGAACGAACCTCGTCCACAGC
ATTTTTCTGCGTGCTTGGCTGAGACATGGAATTCAACACCAATGCGTGAA
CAAAGTAGGCACGGCGGTGCCGCAGGTATGCACCCTGAAGCAAGTTGCCC
ACCAAGACCCCATGGTCCGGCAAGGGGCGGGGACGTTCGAGTCACGCTGG
CGTCAACATTTCACTACCAGAGTATCATGTCACACGCGAGGTTCCTACTC
TCAGCGTGCGGGAGAAGACCTGCATGTTTTCAGATGAGGGTCAGATCAAA
GCAATGGTCGTTTCGCAACGGAAGGATTGACTTGTCCCTTCTGTTCTGCT
GATGTTGTTGTGGGAGAGCTCACTTCGACGACCTATCCTCACCTCACCCC
ATCATTAGCCGCAACACCCAACTCTAACATGATCCAACGCACACCACACC
GCAAGCGTAACCAGAAAATGTTCTTCCCATGTCTCTCGAAAGCATGATAC
GCCATGTTGAGTGCATTGCTTGCTTTTCTATCTAATCGCTCAATCAGGCC
GCTGGGCGTGCAGTTCAACTTGATCCAGTTCAAGATTCTCAGCAATTGGG
GAAACCCGGACTACACGTGCCTGTACCGCCTGCGCGTCCACGGAAGAGAG
CGTGAATCAAGCCCTGCCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9476:1..6021+

>mRNA_Ecto-sp13_S_contig9476.21090.1 ID=mRNA_Ecto-sp13_S_contig9476.21090.1|Name=mRNA_Ecto-sp13_S_contig9476.21090.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1263bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9476:1..6021+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGCCAGGAGCTTCGAGGAATTTCGAGCGCGTCGAGCGGGAGCCTT
GAAGGAAATAGAGGAGATCGCGGGGAGATTGAGATCGTCGGTGCTGGAGG
TAGAGGAGCTGGAGGCGCTTGGCAAGGCGGTGCACGAGGACAACAGCGGT
GACGCCGGTCTCACTACCGAGGTCACGAGGGCCCAAGAGAGCCTTCGCGA
TCTGCACCGATCGGTGACGGACGAGTTGGGCAGCTTTCAGCGGCGGCTTG
AAGAGCAGGCGGGGACGATGAGAGAGGTTCGGGACGGCATGGCCAGATTC
AGCCAGCTCGCGGAGCGCAGGGAGGATCGGATTGCCGCTGCAGTGCACAT
GAAACTAGAATCAAAGCTGGACGACAACCTGGCCGACCTGAAGGACTTCT
ACCACACGGTGGAAGAACACGTCGATAGTCTGTCTCCGGACGTCATGACC
GCTTCAGACCTTGAGGCGTTGCTCGAAAGTGCTGCGGCGCAACCCTCGGA
GCGAACCGGCACAAGCAGGGGCGGCGACGACGACGCTGCGGAGCATCAAA
TTCGAGCCCTGTCCAAGGCGGCGGTGGACCTCGCGGTAAAGACGAGGGTG
CTCGGAAGCGGTAGCCGGGACGGCGGCGACGAAAGCGGCGGAGGAGGAGG
AGGGTGCGTCTCCGAGGGGGTGGTGAGGGAGGAGGTGGACGTGGCGATCG
GGAAGCTGATGGCGGATGGTACAGGGATGCGGGACTACGCCAACGCCGCC
CTCGGCGGCAAAGTGCTCACGTCCAAGGGGATGGTGTCCGACACATACAC
GCCGTCGTCTTGGTGGGGACCCAGCCGGTACTGGCACGGAGCCGGGGTAG
AGAACGGCGTCGGCCCGGTGGAGTCGGTTATTTCGGAGGGCAGCAGCCTG
GGCGCCTGCTGGGCCATGTCCGGGAGCGAGGGCCTCGTGACCATCCAGCT
TCCCGAAAAGATCACGGTGGACGGAGTCTCCGTGGAGCACGTGTCTAGGA
TGGTCACTACGGAGAGTGGGTCGGCACCTAAGGAGCTCGAGGTGTGGGGC
ATGAGGAACAAGAAAGACAAGAAACCGGCGAAGCTCGGGAGCGCCGTGTA
CGACGTTGACGGGAGGCCAATCCAGACTTTCCCCATTGAGCCGCTGGGCG
TGCAGTTCAACTTGATCCAGTTCAAGATTCTCAGCAATTGGGGAAACCCG
GACTACACGTGCCTGTACCGCCTGCGCGTCCACGGAAGAGAGCGTGAATC
AAGCCCTGCCTAG
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