mRNA_Ecto-sp13_S_contig9462.21074.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9462.21074.1
Unique NamemRNA_Ecto-sp13_S_contig9462.21074.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9462.21074.1 vs. uniprot
Match: A0A6H5KVC1_9PHAE (EngB-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVC1_9PHAE)

HSP 1 Score: 577 bits (1488), Expect = 6.220e-204
Identity = 294/303 (97.03%), Postives = 297/303 (98.02%), Query Frame = 3 
Query:  114 MFRSGFARCRPRQMSAPGGLRLSCRQPLGAWMGSSGSTAVRVFSTEPAGPEISKRQQFRQIAVDAKVMRHLDALGLGMEKKKIERGRKLRLYRRGAVSSAVPGATVTAAKPTTFDHPTWAVKQLSSATKLEEIPPAAASLPEVALVGRSNVGKSTLLNALVGLKKHPNQRASVSETPGETRTLDFFQIGKGKRAKMIIADMPGYGFAYANEEQRQDWKGLMMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDPKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEEVS 1022
            MF SGF RCRPRQ+SAPGGLRLSCRQPLGAWMG SGSTAVRVFSTEPAGPEISKRQQF+QIAVDAKVMRHLDALGLGMEKKKIERGRKLRLYRRGAVSSAVPGATVTAAKP TFDHPTWAVKQLS  +KLEEIPPAAASLPEVALVGRSNVGKSTLLNALVGLKKHPNQRASVSETPGETRTLDFFQIGKGKRAKMIIADMPGYGFAYANEEQRQDWKGLMMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDPKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEEVS
Sbjct:    1 MFTSGFGRCRPRQVSAPGGLRLSCRQPLGAWMGRSGSTAVRVFSTEPAGPEISKRQQFKQIAVDAKVMRHLDALGLGMEKKKIERGRKLRLYRRGAVSSAVPGATVTAAKPRTFDHPTWAVKQLSPVSKLEEIPPAAASLPEVALVGRSNVGKSTLLNALVGLKKHPNQRASVSETPGETRTLDFFQIGKGKRAKMIIADMPGYGFAYANEEQRQDWKGLMMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDPKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEEVS 303
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BLAST of mRNA_Ecto-sp13_S_contig9462.21074.1 vs. uniprot
Match: A0A835ZG72_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG72_9STRA)

HSP 1 Score: 251 bits (640), Expect = 1.400e-73
Identity = 140/267 (52.43%), Postives = 185/267 (69.29%), Query Frame = 3 
Query:  243 STEPAGPE--ISKRQQFRQIAVDAKVMRHLDALGLGMEKKKIERGRKLRLYRRGAVSSAVPGATVTAAKPTTFDHPTWAVKQLSSATKLEEIPPAAASLPEVALVGRSNVGKSTLLNALVGLKKHPNQRASVSETPGETRTLDFFQIGKGKRAKMIIADMPGYGFAYANEEQRQDWKGLMMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDPKGP-----SPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEEVS 1022
            S +P+G    IS R  FR + +D KV+ +LD+  LG E  K    RK  L  +G     +   T  +A   TFD PTWAVK+++SA  +EEIPP +  LPEVA VGRSNVGKSTLLNAL+GLK HP  RA+ S  PGETR++DFF++GKG +A++++ D PG+GFA+A EE+ + +   ++ YLRGRGA LKRV +LLDARHGFK  D+ FL  LY  KG      +PLG Y+PPK+Q++LTKCDLV+R +LARRV  VR +L +V+
Sbjct:   67 SDDPSGEPATISNRAAFRALPIDNKVLAYLDSRDLGRELPKRASKRKRVLIEKGLHD--LHSVTPESAALKTFDVPTWAVKKVASAQSVEEIPPPS-ELPEVAFVGRSNVGKSTLLNALLGLKGHPLVRAATSMRPGETRSIDFFRLGKGSKAQLLLVDTPGFGFAFAKEEESERFIATLLQYLRGRGALLKRVCMLLDARHGFKANDVAFLQRLYARKGQDGLGRNPLGPYKPPKLQVILTKCDLVQRRELARRVSQVRARLSDVT 330
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BLAST of mRNA_Ecto-sp13_S_contig9462.21074.1 vs. uniprot
Match: A0A7S2GV24_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GV24_9STRA)

HSP 1 Score: 154 bits (388), Expect = 4.120e-40
Identity = 86/195 (44.10%), Postives = 117/195 (60.00%), Query Frame = 3 
Query:  537 EVALVGRSNVGKSTLLNALVGLKKHPNQRASVSETPGETRTLDFFQIGKGKRAKMIIADMPGYGFAYANEEQRQDWKGLMMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDPKG--PSPLGKY---RPPKIQILLTKCDLVKRIDLARRVVFVRQQLEEVSAERE----------REVNGCLHLLLDLA 1076
            E+ALVGRSNVGKS+LLN ++ +   P  +A     PG T+ L F+      R  + + D+PGY FAY ++E+ + W  LM+ YLR RG  LKRV LLLDARHG K  D +FL LLY+P+     P G++    PPK+Q++LTKCDLV R DL RR+  VR+++ +    R           RE  G + L  +LA
Sbjct:   40 EIALVGRSNVGKSSLLNTVLNISASPKNKAPTGTRPGVTQKLHFYAAAT--RKPLTLVDVPGYSFAYEDQERIEAWNDLMLKYLRHRGPSLKRVCLLLDARHGLKVIDRQFLRLLYEPRPIVDPPPGEHVLWDPPKLQVILTKCDLVDRFDLVRRIQRVREEMSDELPSRAGRLQAIMVSAREGKGIMELQRELA 232
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BLAST of mRNA_Ecto-sp13_S_contig9462.21074.1 vs. uniprot
Match: A0A1Z5JKA0_FISSO (GTP-binding protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKA0_FISSO)

HSP 1 Score: 154 bits (389), Expect = 2.300e-39
Identity = 101/289 (34.95%), Postives = 157/289 (54.33%), Query Frame = 3 
Query:  240 FSTEPAGPEISKRQQFRQIAVDAKVMRHLDALGLGMEKKKIERGRKLRLYRRGAVSSAVPGATVTAAKPTTFD---------HPTWAVKQLSSATKLEE---IPPAAASLPEVALVGRSNVGKSTLLNALVGLKKHPNQ----------------------RASVSETPGETRTLDFFQIGKGKRA--KMIIADMPGYGFAYANEEQRQDWKGLMMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDP---KGPSPLGKYRPPKIQILLTKCDLVKRIDLARRV 989
            F+T+ A  + S++QQFR   VD  +++++ ++G+G+  ++          R+   +   P     A  PT++           P   +  +S+   L+E    PP     PE+AL+GRSNVGKSTLLN L+   ++ N+                      +A  S  PGET+ + F+ +  G+ +  ++ + D+PGYGFAYA+EE ++    L+ ++L+ R   LKR++LL+DARHG KKADI+FL LL D    K  +   K   P IQ++LTKCDLV + DLARRV
Sbjct:   30 FTTDTAVGK-SQKQQFRDTPVDPSILKYITSVGVGIPPRR----------RKNRRNDNTPDEVSNANNPTSWKVPLPFGPNASPVRVIASVSAVNTLDENMGFPPVHKERPEIALIGRSNVGKSTLLNTLLYANRNENRQQEGGRAGRRSRIQTIELPRGIKAVTSNKPGETKHVTFYHLSSGEDSTCRLCLVDLPGYGFAYASEETKKTVDELIFSFLKQRQGHLKRILLLIDARHGMKKADIDFLTLLEDELVYKDSANNKKKTLPPIQVVLTKCDLVHQADLARRV 307
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BLAST of mRNA_Ecto-sp13_S_contig9462.21074.1 vs. uniprot
Match: A0A7S1VXG1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VXG1_9STRA)

HSP 1 Score: 158 bits (399), Expect = 5.140e-39
Identity = 101/222 (45.50%), Postives = 129/222 (58.11%), Query Frame = 3 
Query:  474 VKQLSSATKLEE-IPPAAASLPEVALVGRSNVGKSTLLNALV--------------------GLKKHPNQRASVSETPGETRTLDFFQI------------GKGKRAKM--IIADMPGYGFAYANEEQRQDWKGLMMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDP------KGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEE 1016
            VK L S+  LEE +P ++  L EVAL GRSNVGKSTLLNAL+                      K     +A +S+ PGETR +  +Q+            GK  + KM  ++AD+PGYGFA+A+EE+ ++W  LM  YL  RG  LKRV+LL+DARHG K AD EFL  L +       +G +P      P IQI+LTKCDLV + DLARRVV VRQQL +
Sbjct:  252 VKLLGSSGSLEEELPKSSKGLSEVALAGRSNVGKSTLLNALLYGNQLGKPQERQYRRGKTPENAKLPKGVKAVMSDKPGETRRITLYQLSSEIIKPPKDEQGKKHKEKMSLLLADLPGYGFAFASEEKYKEWHDLMRHYLLDRGKSLKRVLLLIDARHGMKNADFEFLSSLQESLKSTSKEGATPKNVRELPPIQIVLTKCDLVTQDDLARRVVQVRQQLSD 473
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BLAST of mRNA_Ecto-sp13_S_contig9462.21074.1 vs. uniprot
Match: B7FQ16_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQ16_PHATC)

HSP 1 Score: 151 bits (382), Expect = 1.180e-37
Identity = 116/317 (36.59%), Postives = 163/317 (51.42%), Query Frame = 3 
Query:  231 VRVFSTEPAGPEISKRQQFRQIAVDAKVMRHLDALGLGM----EKKK-----IERGRKLRLYRRGAVSSAVPGATVTAAK------PTTFDHPTWAVKQLSSATKLEEIPPAA-ASLPEVALVGRSNVGKSTLLNALVGLKKHPN--------------------QRASVSETPGETRTLDFFQIGKGKRAK--------MIIADMPGYGFAYANEEQRQDWKGLMMAYLRGRGAP-LKRVMLLLDARHGFKKADIEFLGLLYDPK----------GPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEE 1016
             R+FS+     ++S R+ F+++AV   +  ++  +G+G+     KKK     IE GR  R  R G   +  P AT    +      P  F    + VK + +   L++  PA   ++PE+ L GRSNVGKSTLLNAL+   KH +                     +A+ S+ PGETR + F+Q+      +        + + D+PGYGFAYA EE  + ++ LM  YL  RG   LKRV+LL+DARHG KKAD++FL  L +            G        PP IQ++LTKCDLV R DLARRV  VR QL +
Sbjct:    8 TRIFSSSVIDAKVSNRRSFKELAVHPSIHNYIQLIGVGIPPRRSKKKSQRIAIEPGR-FRDRRGGRAMN--PEATEDQKRERHWKPPPPFGPKAFPVKVVGNVATLDDHYPANHKNIPEIVLAGRSNVGKSTLLNALLYGNKHADAVVRQRVRGKTPESVKQPKGMKATTSDKPGETRAITFYQLAARLERENGVFYDHALRLVDLPGYGFAYAKEEAARRYRALMADYLLKRGNKYLKRVLLLIDARHGMKKADVDFLMDLQEHSRHLQENSRLDGKRKKNAQLPP-IQLVLTKCDLVTRADLARRVAQVRSQLSD 320
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9462.21074.1 vs. uniprot
Match: A0A1Z5J7J0_FISSO (GTP-binding protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7J0_FISSO)

HSP 1 Score: 148 bits (373), Expect = 5.300e-37
Identity = 97/273 (35.53%), Postives = 151/273 (55.31%), Query Frame = 3 
Query:  270 SKRQQFRQIAVDAKVMRHLDALGLGMEKKKIERGRKLRLYRRGAVSSAVPGATVTAAK-PTTFDH---PTWAVKQLSSATKLEE---IPPAAASLPEVALVGRSNVGKSTLLNALVGLKKHPNQ----------------------RASVSETPGETRTLDFFQIGKGKRA--KMIIADMPGYGFAYANEEQRQDWKGLMMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDP---KGPSPLGKYRPPKIQILLTKCDLVKRIDLARR 986
            S+RQQFR   VD  +++++ ++G+G+  ++       R  RR   ++       T+ K P  F     P   +  +S+   L+E    PP     PE+A +GRSNVGKSTLLN L+   ++ N+                      +A  S  PGET+ + F+ +  G+ +  ++ + D+PGYGFAYA+EE ++    L+ ++L+ R   LKR++LL+DARHG KKADI+FL +L D    K  + + K   P IQ++LTKCDLV + +LARR
Sbjct:   41 SQRQQFRDTPVDPSILKYITSIGVGIPPRR-------RKNRRNDGTTDENANNPTSWKVPLPFGPNALPVRVIASVSAVNTLDENMGFPPVHKERPEIAFIGRSNVGKSTLLNTLLYANRNENRAADGGRAGRRSRIQTIELPKGIKAVTSNKPGETKQVTFYHLSSGEDSTCRLCLVDLPGYGFAYASEETKKTVDDLIFSFLKQRQGHLKRILLLIDARHGMKKADIDFLTMLEDELVYKDSANIKKKTLPPIQVVLTKCDLVHQGELARR 306
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9462.21074.1 vs. uniprot
Match: A0A1Y1WK35_9FUNG (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WK35_9FUNG)

HSP 1 Score: 145 bits (365), Expect = 5.670e-36
Identity = 118/304 (38.82%), Postives = 148/304 (48.68%), Query Frame = 3 
Query:  228 AVRVFSTEPAGPEISKRQQFRQIAVDAKVMRHLDALGLGMEKKKIERGRKLRLYRRGAVSSAVPGATVTAAKPTTFDHPTWAVKQLSSATKLEEIPPAAASLPEVALVGRSNVGKSTLLNALVGLKKHPNQRASVSETPGETRTLDFFQIGKGKRAKMIIADMPGYGFAYANEEQRQDWKGLMMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDPKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEE----------VSAEREREVNGCLHLLLD--------LAQHK 1085
            AVRV  +E    E+S RQ F ++  DAK +  LD L LG EK    RGR                          F+   W   Q +  T           LPE+  VGRSNVGKSTL+N L G     +  A VSE PG T+ ++F+           + DMPGYGFAY  EEQ+Q W  L+  Y+R R   LKRVMLLLDARHG K  D EF+ LL D  G          K Q+++TKCDLV RIDLA+R + V Q+ ++          VSA+ ER +N     +L         LA HK
Sbjct:   47 AVRVGKSE----ELSNRQLFSRLQPDAKTLDALDMLQLGTEK----RGR--------------------------FERRKWFPVQRARET-----------LPEIGFVGRSNVGKSTLVNTLCG-----SSAARVSERPGLTQQINFYTADND----FHLVDMPGYGFAYVKEEQKQAWVPLIEKYVRERKR-LKRVMLLLDARHGIKANDQEFMELL-DRTGT---------KYQVVMTKCDLVSRIDLAKRHLLVAQETQKSRNCIPRVLMVSAKHERGLNDLRKEILHTCGLGKKYLAMHK 285
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BLAST of mRNA_Ecto-sp13_S_contig9462.21074.1 vs. uniprot
Match: A0A7S1ZZ98_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZ98_TRICV)

HSP 1 Score: 146 bits (369), Expect = 5.220e-35
Identity = 96/230 (41.74%), Postives = 129/230 (56.09%), Query Frame = 3 
Query:  474 VKQLSSATKL-EEIPPAAASLPEVALVGRSNVGKSTLLNALV-----------------------GLKKHPNQRASVSETPGETRTLDFFQIG--------KGKRAK-----MIIADMPGYGFAYANEEQRQDWKGLMMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDP------KGPSPLGK------YRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEE 1016
            VK L  A  L +++P +++ LPEVAL GRSNVGKSTLLNAL+                        +K    ++A VS+ PGET+ +  +Q+         +G+R       +++AD+PGYGFAYA+E +   W  LM  YL  RG  LKR++LL+DARHGFK AD  FL  L +       KG     K      +  P IQI+LTKCDL K+ DLARRVV V++QL +
Sbjct:  218 VKVLGKAGSLNDDMPRSSSGLPEVALAGRSNVGKSTLLNALLYGNQPSRDGHSVERMYQRGKTPERMKLPRGEKAKVSDKPGETQDITLYQLSSDMVFLNKEGQRENKSKMSLVLADLPGYGFAYASENKATTWSELMKHYLLRRGESLKRILLLIDARHGFKNADYAFLETLQNALKEGQKKGAHVSSKQQCGLEFDLPPIQIVLTKCDLCKQDDLARRVVQVKEQLSK 447
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9462.21074.1 vs. uniprot
Match: A0A7R9YFZ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFZ8_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.420e-34
Identity = 95/238 (39.92%), Postives = 127/238 (53.36%), Query Frame = 3 
Query:  231 VRVFSTEPAGPEISKRQQFRQIAVDAKVMRHLDALGLGMEKKKIERGRKLRLYRRGAVSSA-VPGAT--VTAAKPTTF-----------------DHPTWAVKQLSSATKLEEIPPAAASLPEVALVGRSNVGKSTLLNALVGLKKHPNQRASVSETPGETRTLDFFQIG-KGKRAKMIIADMPGYGFAYANEEQRQDWKGLMMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLL 881
            V +F+        S R Q R     A++  +L+  GLG  K    R   LR+ +RG V S  + GA   VTA +                     D   W  ++++  T  EEIP     LPEV ++GRSNVGKSTLLNA++  K HP +RA  S+ PG TRTLDF+ +G K +R +M + D PGYGFAY    +   W  L + +L+G    L+R++LLLDARHGFK AD  FL  L
Sbjct:   27 VGIFARRCGFRRSSSRAQVRS---RAQIEAYLETRGLGRIKGDRSRSGALRIAKRGRVKSGKIKGARNQVTAVEAALLRKAELKVPKEVSEYFSRDGARWNTRRIAHVTSEEEIPAPKDRLPEVMIIGRSNVGKSTLLNAILDTKGHPLRRAETSDKPGLTRTLDFYSVGGKRQRPRMALIDAPGYGFAYGKTVELLKWHHLTLRFLQGNRPSLRRLLLLLDARHGFKAADKNFLEAL 261
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9462.21074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVC1_9PHAE6.220e-20497.03EngB-type G domain-containing protein n=2 Tax=Ecto... [more]
A0A835ZG72_9STRA1.400e-7352.43P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2GV24_9STRA4.120e-4044.10Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1Z5JKA0_FISSO2.300e-3934.95GTP-binding protein n=1 Tax=Fistulifera solaris Ta... [more]
A0A7S1VXG1_9STRA5.140e-3945.50Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B7FQ16_PHATC1.180e-3736.59Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5J7J0_FISSO5.300e-3735.53GTP-binding protein n=1 Tax=Fistulifera solaris Ta... [more]
A0A1Y1WK35_9FUNG5.670e-3638.82p-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S1ZZ98_TRICV5.220e-3541.74Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
A0A7R9YFZ8_9STRA2.420e-3439.92Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9462contigEcto-sp13_S_contig9462:129..6321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score576.2
Seed ortholog evalue1e-161
Seed eggNOG ortholog2880.D7FRN1
Model size1443
KEGG koko:K03978
Hectar predicted targeting categorymitochondrion
Exons9
EggNOG free text desc.GTP binding
EggNOG OGsCOG0218@1,KOG2486@2759
Ec32 ortholog descriptionYihA1, YihA/EngB-like GTPase
Ec32 orthologEc-12_002430.1
Cds size1056
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9462.21074.1prot_Ecto-sp13_S_contig9462.21074.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9462 403..6208 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464214.11023-UTR-Ecto-sp13_S_contig9462:128..4021681464214.11023-UTR-Ecto-sp13_S_contig9462:128..402Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9462 129..402 -
1681464214.266867-UTR-Ecto-sp13_S_contig9462:6208..63211681464214.266867-UTR-Ecto-sp13_S_contig9462:6208..6321Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9462 6209..6321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464214.1273565-CDS-Ecto-sp13_S_contig9462:402..6621681464214.1273565-CDS-Ecto-sp13_S_contig9462:402..662Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9462 403..662 -
1681464214.138045-CDS-Ecto-sp13_S_contig9462:1083..11801681464214.138045-CDS-Ecto-sp13_S_contig9462:1083..1180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9462 1084..1180 -
1681464214.1509042-CDS-Ecto-sp13_S_contig9462:1408..14471681464214.1509042-CDS-Ecto-sp13_S_contig9462:1408..1447Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9462 1409..1447 -
1681464214.1747506-CDS-Ecto-sp13_S_contig9462:1933..20151681464214.1747506-CDS-Ecto-sp13_S_contig9462:1933..2015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9462 1934..2015 -
1681464214.1921575-CDS-Ecto-sp13_S_contig9462:2590..26411681464214.1921575-CDS-Ecto-sp13_S_contig9462:2590..2641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9462 2591..2641 -
1681464214.2026906-CDS-Ecto-sp13_S_contig9462:3345..34761681464214.2026906-CDS-Ecto-sp13_S_contig9462:3345..3476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9462 3346..3476 -
1681464214.215935-CDS-Ecto-sp13_S_contig9462:3951..40661681464214.215935-CDS-Ecto-sp13_S_contig9462:3951..4066Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9462 3952..4066 -
1681464214.2308846-CDS-Ecto-sp13_S_contig9462:5498..55991681464214.2308846-CDS-Ecto-sp13_S_contig9462:5498..5599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9462 5499..5599 -
1681464214.24192-CDS-Ecto-sp13_S_contig9462:6028..62081681464214.24192-CDS-Ecto-sp13_S_contig9462:6028..6208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9462 6029..6208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9462.21074.1

>prot_Ecto-sp13_S_contig9462.21074.1 ID=prot_Ecto-sp13_S_contig9462.21074.1|Name=mRNA_Ecto-sp13_S_contig9462.21074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=352bp
MFRSGFARCRPRQMSAPGGLRLSCRQPLGAWMGSSGSTAVRVFSTEPAGP
EISKRQQFRQIAVDAKVMRHLDALGLGMEKKKIERGRKLRLYRRGAVSSA
VPGATVTAAKPTTFDHPTWAVKQLSSATKLEEIPPAAASLPEVALVGRSN
VGKSTLLNALVGLKKHPNQRASVSETPGETRTLDFFQIGKGKRAKMIIAD
MPGYGFAYANEEQRQDWKGLMMAYLRGRGAPLKRVMLLLDARHGFKKADI
EFLGLLYDPKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLE
EVSAEREREVNGCLHLLLDLAQHKPQRTGTTRLVLSSVHDMPHERCCLSS
C*
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mRNA from alignment at Ecto-sp13_S_contig9462:129..6321-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9462.21074.1 ID=mRNA_Ecto-sp13_S_contig9462.21074.1|Name=mRNA_Ecto-sp13_S_contig9462.21074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6193bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9462:129..6321- (Ectocarpus species13 EcNAP12_S_4_19m)
ACACATACATGCTGCGCTGCTGTTAATCGGGTTTTGGAGACAACTGCCTC
CAATCTGGCGTTGATCTACTCTTGCGTGCGCTCGACAACCAGCTCGAGAG
CGGTCTAGCCAAAATGTTTCGATCAGGCTTCGCGCGATGTCGTCCACGTC
AAATGTCCGCGCCTGGCGGCTTGCGATTGAGCTGCCGACAGCCGCTGGGA
GCATGGATGGGAAGCAGCGGCAGCACTGCTGTCCGCGTGTTTTCTACAGA
ACCAGCAGGACCGGAAATCAGCAAGCGGCAGCAATTCAGACAGGTGTCCG
CAAAACAGCAAGTGTGTAGCGAGTGTGGAGCATTGTGGAGGTCGTGGGTT
TGTTGACAGTCCCGCCATGTCACACAGAGGGTAAAGCAGAGCCACCGCTC
CATTTACCGATGGCCGTCATCCTTCCGCACCACGTTGTTGAGGCGAATAT
AAAAAGCAGCAGAACGTTAATGTTGATTCGGCATGTGCATCAAGAGGGTT
CAAACTTCGAACTGCGAAGGTCAGCGTGCTCTTCACCATCTGTGTGCACC
CCAGCGGATGGGTTGCACTGGAACGCAAGATTGGGTCGAAACGAGAACAC
GCACAGCCGCCTACTAGACTACACATCAACAGGGCGCTGTTACACTCACC
AGTTAGGGAAAATTGTTACTGTTTGTTCCCATCTGAGGCAACGCGCGCCG
CCGCTTTCGTTTCGTATTACAGATCGCTGTCGACGCCAAGGTGATGCGGC
ATTTGGACGCGCTGGGGCTGGGCATGGAGAAAAAAAAGATCGAACGTGGT
CGAAAGCTGCGTCTGTACCGAAGGTGCGATTCTAGGCGACGACCAGACGC
TCGCATCATCATAGGGTTTACACCGTCGGTTATAATTTTGACATTTGACG
TGAAAGATTGACAAACCAACTGCCCAACACATTCCTTCTGTACATTCCCA
ACACAACATGCAGATAGATGCACAAAACGGCTACCACACTGTCTTCTTGA
CCCTCTTACCCACGGGGGAGATGTCGTTGTATGCTACTCGGGAAATCATG
GAAACACAGGTAGCCTTCACTGTCGCTATGGATTCATTGCTTATCTGTCT
TGGACTCTTTTCTTAGATAGAGATGGATTCGTTGTGTCATATTAAGGAAA
AAAAAAAATTGACATGTCGGGAAATTTTGACACGAGAAGGTTCCGCCGCG
TTTCGGGAGACAATATTCTCACGACGATACTTTTTCAGACCGTGTAAAAA
AAAAGGACATGAAAAGATTGACGGCTATTCTCCAGGCGGCACATACACAC
ATGTTCTCTCAGCTACCGTCACCGAAAAGGAGCGACGCCAGCAGCAAACA
CATCCACCACCCCAACTGAAACATCCTACGCGGTCCTGTACAAACGTCTT
GGCGAGTTCGCGCGGCATCGCGTGCCCGGAGTCGCGTGTTCGGCGCGCGC
GTTCGATAGTTGGCAGAGGCGTGTGTGTGCTAGCACAGCAGCAGCACCTT
GACTGCGGTGATCAGGGTTGTCGTGCCCCCGAAGGGAGCAGAGAGAGAGG
CATAAGGGATGGTACACGGACTTGGCAGGTCAACTTCGTGCATCTCACCC
AACCCCGTGAGGCGACAGGGTTGGGGTTTGCACTGGGGCGCTTGGTGCTG
CCAGCAGCTTGCCCGGCGACAGCAGTCTCTCTTTTTTTGTTTCGGTGGTT
CCTAGAGTCAATGGGCACAAGCGGCGAGTTTATTTCGCGTCAAAATCTCA
ACCATGACTTCGGACTGGCGTCAACCCTCATACGTCAAAGTTCCAGTCAA
TACAGGGTGTAAACCCTCTTCTACCGCTCGCACGCTGCACTGTTCTCTCG
GGTAGACTACACGGTAGTTTGCGCTATGTACGCCACCCGTCTTTCAACGG
TCGGTGGGCTTGTTGTACATACTGCGGTAGTCTGCGCATGCGACCCTGTT
GGAACGTGAGCTTACGTCCGAACGCGGCACAAACCTGCCTCATCATTGTC
GTCGGTAACCCTGAGGTGTTGCACCACGAGTAAATTGTGTGCGAGTACCG
GTTCTCAATTTGGAACTGGTGTTTGTGTGGCTGTACAACGTTCGAACTTG
CCCGTGGCTGATGCTCCAGTCTGGCGTTTCTATCAACAGCGTTCGTGGTA
TCTTACGAGGCCATCGTCGCAACTCCGACGACTCTTGCCTTCGACCTCGC
GCACTAAACCGCCGTTGGCTACGTGCCTACAAAACCCTCCGCAAAACACC
TACAGGGGTGCCGTATCTTCTGCCGTGCCTGGAGCTACGGTTACCGCGGC
CAAGCCTACGACGTTCGACCATCCAACGTGGGCCGTGAAGCAGCTATCTT
CCGCTACCAAGCTTGAGGAGGTGAAGCGCACGCCCCCAACCCCTCCTTCC
AAAATCGCGCCCGCCGGCAGTCAAGCGCCGCCAGGAGCTCGTGCTCCGTC
TCAAACGGGAATGCATGGTTGTCTCCTTTGACGCACAGACCTCCAGCACC
ACGTTTTTGAGCCACCTTGGGCAAAGTAGGAAGGAACGATTGGCCATCGG
TGATCGGTCCTATATGAAAAATGCTCCGTCCTCTCGAAAATGCTCCGTCC
TGTCGAGGACACGTGGCCAATGGTCTGACAACGAAGGCATGCAGAACATT
AGAGTACGCCCCACCAACACTACCCCACTTTAATGTTGAGACTTGATCGG
ACGTCCACCGCGGAGATAAGCCACAAAAATTGCCCCCGTGCCCCTTCTCC
CATCATCCTTGTATATTGTGAACCCCAACTATTTTGTTTGACAAACACAC
GTGCCGCTGCTGTTGTTGTTACTCTGTCGCTTTTGCTTCTAATAGATACC
CCCTGCGGCAGCTAGCCTGCCCGAGGTAGCCCTGGTTGGTAGGTCCAACG
TGGGCAAGTCGACCCTACTCAACGCACTGGTGGGCCTCAAGAAGCACCCG
AACCAGAGAGCCAGCGTCTCAGAAACGTGAGCGCCGGGCATAGTGTTGGT
CCAACTTTCGTACGACCGCTCTGTGAGACAGGACTACCTGCGCGAAGATG
TCAAGTCGTTCATCTATGACTTGGAGAGGCAAGGAATACGTAGACCCTAA
CCCTGGCCGTAATTCCCACCTATTCCGTACTTCATCCAACATACTCGCAT
AAAAGAAACCCTGCGTAGGCACTGGTAAAGGCACGCGTGTGTTACACAGC
CAGTGCATCGATCGTCTCTAGTGGTTCCGCCGGCGCTTCGGGTTGTTTAT
TTGGGCGAGAGAGAGGGCAGTCTTGCTTTAACTCTTAGATCACAGCAGGC
GAGAGCGAATTCTCGACGTTGAAAACTGTATGCTAACTATTATCCCAACT
CCCGTCATGCGTCATGTTGGCTACTGCCAACACCTCGGCTAGGCTATTTC
GATCCAGGAGTATGTATTGCGCACGAGTTACACTCCCATTTGCTGTCCAG
AGAATCTGATGCCGCCGGGGTGTGTATGCTGAGCTTTCTACAACCACCAG
TAAAAATTTTTCCGTGTCGTCGATCTCAACACATTTGTTGTTACAGAGCA
GGATTCGATTCCTCTCGTTTTTTCGTTTGACCGAGCGGCAGTAGTGGTGG
TATTTATCCCTCCAGACGCCATTTTCACTCTCGCTTGCTTTCTTGTTGAC
CTTGTGTTGATCGTCGTGCGTGCCCAACAGACCTGGAGAAACGCGAACGC
TCGACTTTTTTCAGATAGGGAAAGGCAAAAGGTGAGCACACATTGTTTTG
GGCCACTTTGCGGGTTTTTTCGACGCATCCCTCTGCTGCTGCGCTGTGCG
GTTGCTGTCATGCACAGAAACCCCCCCCACGAACGCAGTTCTTTAGCAAG
TCCGTGGGTGTGCGGGTGGACCGGTTGCCACCGTGTTTCAGTCTAGGGTG
ATTTTCGGCCATTCGTCCGTTTATGGCGTGCACACGAACAGCGGAGGCTG
GCTGAGTGTTGCACATTATTCGTGACGGCTGACTCGTGTGTGATCATCTG
CCCCTCTCGGTTCGCGACGCAGATATAACTTGTGGTTGGATTTCCCACTG
GCCGTTTTGTGAACACGCTGGTGACGCAGCTTCGACGGCTGCCGCGTCAA
ACCTAGTCGTGTCAGTTGTCGGCCCCCATCGACGCCAAAACTGAAGCTTG
GTGTGCGATATCTACTCCGGAATGTGTTCGGAACGAGTTTCACACCTAAC
CGCCAAGCGTTTTGTTGCGTGGAGAAACTTCCAGGATTCCGCATTCGCTT
TTGGTAGACCAGCCGGCCAACTACGGTATGATTTATGTCGTCCGCGCGTT
CTGCAGGGCGAAGATGATTATCGCTGATATGCCTGGCTACGGCTTCGCCT
ACGCGAACGAGGAGCAACGGCAAGACTGGAAGGGGTTGGTGAGCCATCTA
CCCGCCTTCGTTTTCGATGCACCTGCGAAATGTTTTTGAAGTTGGTCTTG
GGAGGGGTCTGGGGCCCCATTCCATTTTTTGCCCGGACGACAAAAACACT
CGTGAATGTACGAAGAAGCGGATGCGTTGCACGCGCTGCCCGCGAGCGCT
GTGGGCGATGCAGATCGCCAGACATGTCGGGCGTTTCAGCCTTGTTTTTG
TCGCCTTTTGGGTCTTTGATCGGACTTCCAGGATGTGTTCACTGGCGAGT
CTTAGCCGTGGAAGTCATGGCTTCATTGTTTCGTCTTCTTTCTCTGTTTC
AAAATCTCCGTGCTCGTTTCGATCTGTGTGCAGCGTTCGTCATTAAGGTG
TTGGAAAGCTCATACTGATTTGGCCCGCCTCATCTGCCTCAACCCCCCCC
CCCGGGCCATTCGCTGGTGCCCCCGTGGAAACGCGCCCTTCCTCGGTTGT
GTGATTTGGTCCTCGCCACCTCAGATGATGGCCTATCTGCGAGGGCGAGG
AGCACCCCTCAAGGTCAGTAGCAGCGACGTCGCAGGATGACGGACGCAAA
ACGGTGGTCGACAGCCTCCCCCGCTTGACGTCTGTGCATCAGGAAAGGTT
TTTGGGTTAAAGCCACCTGTGGTCAATTTGTCTCCACGAATGCTATGCCG
CCTGCGCTCAAGCCCGCCCGTTCGTCAAAGCGATTTATGTGGGATAAAAG
CGATTCTCGTCTACCTTTTTGTTTTGCGTGTTTGTTTGCAGCGAGTCATG
CTGCTCCTGGATGCCAGGCACGGTTTCAAGAAGGCCGACATCGAGTTTCT
TGGGCTTTTGTACGACCCCAAGGGGCCTTCGCCACTCGGTAAGACCTTCA
ATGTCGTGGACATGAACTCGAACGATGAGGCAACATCTCGTGAGGAAAAA
GGTATTTGAGTGCTGTAGCCCGCATCGCGGAATTGGTGTGCGCGTCTGCA
ATGAGAAAACGTTGACAACCTCTGAAGTGACGTGCGTCCTGTGACCTGAG
TTGACCGTTTTATTTCACTGCTCAGTTGACGAGCGAATACACGCGCGGGC
AAAAGGTTTTACAAGGGGCCCAAACAGTGGGAAAGATTATCGCTGCGTGT
TCGTGTTTTTCGAATCACACCCACCCCCCTCTTTCTAAGGAGCGACCCCC
ACCGGCCTGCCCCCCATCGGGATGCTCTGGTGCGACCGCATGGTCGATAG
ATTCGTTCTAATGTACTAGTGCGAACCCCCCCCTCTCCCCCCCCCCCCTT
CTCTTGCAGGCAAGTACCGCCCCCCAAAGATCCAGATTTTGCTGACCAAG
TGCGACCTGGTGAAGAGGATAGACCTCGCCCGGAGAGTCGTTTTCGTTCG
CCAGCAGCTCGAGGAGGTGAGTGCAGAGCGGGAGCGGGAGGTCAATGGCT
GCCTGCACCTGCTTTTGGACCTGGCACAGCACAAACCGCAGAGAACCGGC
ACAACGAGACTTGTGCTCTCCTCGGTGCATGACATGCCACATGAACGCTG
CTGTCTGTCTTCCTGTTAGTGAGAGGTCTCTCGGCGCACATGTTTTATGC
ACACTGTGTAGTGCTGCTGTTTTCTCTAGCGCAGCTGCAGGTATAGACTG
GTGTCAGCATACATGGGACAGCAACCCGCACACACATTATTCCAACCCAT
GGCGATGAAGAGGCCAAATGTTCCACGTCCATTGGCCCCAAACCCTGAAA
CGCCATCATCTATCCATGTGCATGTGCGTTGACGGGGTACGGGCAGCATT
CTACCGACATGGACCCTCTGCTTGCGTCCGTTATTCCTTCTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9462:129..6321-

>mRNA_Ecto-sp13_S_contig9462.21074.1 ID=mRNA_Ecto-sp13_S_contig9462.21074.1|Name=mRNA_Ecto-sp13_S_contig9462.21074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9462:129..6321- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTCGATCAGGCTTCGCGCGATGTCGTCCACGTCAAATGTCCGCGCC
TGGCGGCTTGCGATTGAGCTGCCGACAGCCGCTGGGAGCATGGATGGGAA
GCAGCGGCAGCACTGCTGTCCGCGTGTTTTCTACAGAACCAGCAGGACCG
GAAATCAGCAAGCGGCAGCAATTCAGACAGATCGCTGTCGACGCCAAGGT
GATGCGGCATTTGGACGCGCTGGGGCTGGGCATGGAGAAAAAAAAGATCG
AACGTGGTCGAAAGCTGCGTCTGTACCGAAGGGGTGCCGTATCTTCTGCC
GTGCCTGGAGCTACGGTTACCGCGGCCAAGCCTACGACGTTCGACCATCC
AACGTGGGCCGTGAAGCAGCTATCTTCCGCTACCAAGCTTGAGGAGATAC
CCCCTGCGGCAGCTAGCCTGCCCGAGGTAGCCCTGGTTGGTAGGTCCAAC
GTGGGCAAGTCGACCCTACTCAACGCACTGGTGGGCCTCAAGAAGCACCC
GAACCAGAGAGCCAGCGTCTCAGAAACACCTGGAGAAACGCGAACGCTCG
ACTTTTTTCAGATAGGGAAAGGCAAAAGGGCGAAGATGATTATCGCTGAT
ATGCCTGGCTACGGCTTCGCCTACGCGAACGAGGAGCAACGGCAAGACTG
GAAGGGGTTGATGATGGCCTATCTGCGAGGGCGAGGAGCACCCCTCAAGC
GAGTCATGCTGCTCCTGGATGCCAGGCACGGTTTCAAGAAGGCCGACATC
GAGTTTCTTGGGCTTTTGTACGACCCCAAGGGGCCTTCGCCACTCGGCAA
GTACCGCCCCCCAAAGATCCAGATTTTGCTGACCAAGTGCGACCTGGTGA
AGAGGATAGACCTCGCCCGGAGAGTCGTTTTCGTTCGCCAGCAGCTCGAG
GAGGTGAGTGCAGAGCGGGAGCGGGAGGTCAATGGCTGCCTGCACCTGCT
TTTGGACCTGGCACAGCACAAACCGCAGAGAACCGGCACAACGAGACTTG
TGCTCTCCTCGGTGCATGACATGCCACATGAACGCTGCTGTCTGTCTTCC
TGTTAG
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