mRNA_Ecto-sp13_S_contig9438.21045.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9438.21045.1
Unique NamemRNA_Ecto-sp13_S_contig9438.21045.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9438.21045.1 vs. uniprot
Match: A0A6H5L4I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.850e-32
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    4 QALPEWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQAKPDRRGSPVSSS 186
            +ALPEWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQAKP RRGSPVSSS
Sbjct:   93 KALPEWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQAKPVRRGSPVSSS 153
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BLAST of mRNA_Ecto-sp13_S_contig9438.21045.1 vs. uniprot
Match: D7FPC4_ECTSI (Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC4_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 7.620e-26
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    4 QALPEWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQ 147
            +ALPEWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQ
Sbjct:  134 KALPEWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQ 181
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BLAST of mRNA_Ecto-sp13_S_contig9438.21045.1 vs. uniprot
Match: UPI000C76FFC0 (integrator complex subunit 1-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C76FFC0)

HSP 1 Score: 55.5 bits (132), Expect = 3.720e-7
Identity = 23/46 (50.00%), Postives = 28/46 (60.87%), Query Frame = 1 
Query:   16 EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQAK 153
            EWP   + +YM DA+G R W  H  CKPFVDN+ TA+    P Q K
Sbjct:  186 EWPEVFVRVYMDDAIGERVWVDHPECKPFVDNILTAFNTVLPAQVK 231
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BLAST of mRNA_Ecto-sp13_S_contig9438.21045.1 vs. uniprot
Match: A0A7J7BSJ9_9COLE (Protein aurora borealis n=1 Tax=Abscondita terminalis TaxID=2069292 RepID=A0A7J7BSJ9_9COLE)

HSP 1 Score: 52.8 bits (125), Expect = 3.350e-6
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:   16 EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQ 147
            +WP A + +Y+ DALG R W  +  CKPFVDN+ TA+    PP+
Sbjct:  664 QWPEAFVKLYVEDALGDRTWIDNPYCKPFVDNIITAFNTKQPPK 707
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BLAST of mRNA_Ecto-sp13_S_contig9438.21045.1 vs. uniprot
Match: A0A8K0C6N1_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0C6N1_9COLE)

HSP 1 Score: 52.4 bits (124), Expect = 4.560e-6
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:   16 EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQ 147
            +WP A + +Y+ DALG R W  +  CKPFVDN+ TA+    PP+
Sbjct:  231 QWPEAFVKLYVEDALGDRVWIDNPYCKPFVDNIVTAFNTKQPPK 274
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BLAST of mRNA_Ecto-sp13_S_contig9438.21045.1 vs. uniprot
Match: UPI001D091156 (integrator complex subunit 1 n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D091156)

HSP 1 Score: 50.1 bits (118), Expect = 2.990e-5
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:   19 WPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQ 147
            WP + + I++ DALG R W  +  CKPFVDN+ TA++   PP+
Sbjct:  221 WPESFVRIFVEDALGDRIWIDNPYCKPFVDNIITAFSTKLPPK 263
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BLAST of mRNA_Ecto-sp13_S_contig9438.21045.1 vs. uniprot
Match: UPI000C207F93 (integrator complex subunit 1 n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C207F93)

HSP 1 Score: 50.1 bits (118), Expect = 2.990e-5
Identity = 19/43 (44.19%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:   19 WPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQ 147
            WP + + +Y+ DA+G R W  +  CKPFVDN+ TA+    PP+
Sbjct:  219 WPESFVKLYVEDAVGDRVWIDNPFCKPFVDNISTAFNTKQPPK 261
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BLAST of mRNA_Ecto-sp13_S_contig9438.21045.1 vs. uniprot
Match: A0A5N4AD27_PHOPY (DUF3677 domain-containing protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4AD27_PHOPY)

HSP 1 Score: 49.7 bits (117), Expect = 4.090e-5
Identity = 19/44 (43.18%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:   16 EWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQ 147
            +WP   + +Y+ DALG R W  +  CKPFV+N+ TA+    PP+
Sbjct:  228 QWPDVFVKLYVEDALGDRTWIDNPYCKPFVENIVTAFNTKQPPK 271
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BLAST of mRNA_Ecto-sp13_S_contig9438.21045.1 vs. uniprot
Match: A0A0T6AW20_9SCAR (DUF3677 domain-containing protein n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6AW20_9SCAR)

HSP 1 Score: 49.7 bits (117), Expect = 4.090e-5
Identity = 18/43 (41.86%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:   19 WPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQ 147
            WP   + +Y+ DA+G R W  +  CKPFV+N++TA+    PP+
Sbjct:  231 WPEIFVKLYVEDAVGDRVWIDNPFCKPFVENIKTAFGTKQPPK 273
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BLAST of mRNA_Ecto-sp13_S_contig9438.21045.1 vs. uniprot
Match: UPI001E275D71 (integrator complex subunit 1 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E275D71)

HSP 1 Score: 48.9 bits (115), Expect = 7.640e-5
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 1 
Query:   19 WPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQ 147
            WP   + I++ DALG R W  +  CKPFVDN+ TA+    PP+
Sbjct:  224 WPEVFVKIFVEDALGDRIWIDNPYCKPFVDNIITAFNTKLPPK 266
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9438.21045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5L4I3_9PHAE1.850e-3296.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPC4_ECTSI7.620e-2697.92Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus ... [more]
UPI000C76FFC03.720e-750.00integrator complex subunit 1-like n=1 Tax=Eurytemo... [more]
A0A7J7BSJ9_9COLE3.350e-647.73Protein aurora borealis n=1 Tax=Abscondita termina... [more]
A0A8K0C6N1_9COLE4.560e-647.73Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
UPI001D0911562.990e-546.51integrator complex subunit 1 n=1 Tax=Coccinella se... [more]
UPI000C207F932.990e-544.19integrator complex subunit 1 n=1 Tax=Onthophagus t... [more]
A0A5N4AD27_PHOPY4.090e-543.18DUF3677 domain-containing protein n=2 Tax=Photinus... [more]
A0A0T6AW20_9SCAR4.090e-541.86DUF3677 domain-containing protein n=1 Tax=Oryctes ... [more]
UPI001E275D717.640e-546.51integrator complex subunit 1 n=1 Tax=Harmonia axyr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9438contigEcto-sp13_S_contig9438:5621..5845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score108.6
Seed ortholog evalue1.3e-21
Seed eggNOG ortholog2880.D7FPC4
Preferred nameINTS1
Model size225
KEGG koko:K03178,ko:K13138
KEGG Pathwayko04120,ko05012,map04120,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010466,GO:0010467,GO:0010605,GO:0010941,GO:0010951,GO:0016070,GO:0016073,GO:0016180,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0030162,GO:0030880,GO:0031123,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032039,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034472,GO:0034474,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040007,GO:0042795,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043628,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045861,GO:0046483,GO:0048519,GO:0048523,GO:0048589,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0052547,GO:0052548,GO:0055029,GO:0060255,GO:0060548,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:2000116,GO:2000117
Exons1
EggNOG free text desc.U2 snRNA 3'-end processing
EggNOG OGsCOG0476@1,KOG2012@2759,KOG4596@1,KOG4596@2759
EC6.2.1.45
Cds size225
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04121,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464211.6897852-CDS-Ecto-sp13_S_contig9438:5620..58451681464211.6897852-CDS-Ecto-sp13_S_contig9438:5620..5845Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9438 5621..5845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9438.21045.1prot_Ecto-sp13_S_contig9438.21045.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9438 5621..5845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9438.21045.1

>prot_Ecto-sp13_S_contig9438.21045.1 ID=prot_Ecto-sp13_S_contig9438.21045.1|Name=mRNA_Ecto-sp13_S_contig9438.21045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
HQALPEWPIALLDIYMHDALGGRQWASHSACKPFVDNVRTAWAPPTPPQA
KPDRRGSPVSSSESGAAAAAGSGGS
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mRNA from alignment at Ecto-sp13_S_contig9438:5621..5845-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9438.21045.1 ID=mRNA_Ecto-sp13_S_contig9438.21045.1|Name=mRNA_Ecto-sp13_S_contig9438.21045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9438:5621..5845- (Ectocarpus species13 EcNAP12_S_4_19m)
CACCAGGCGTTGCCGGAGTGGCCCATCGCCCTGCTAGACATCTACATGCA
CGACGCGCTGGGAGGGAGGCAGTGGGCCTCCCACTCCGCCTGTAAGCCGT
TCGTGGACAACGTCCGCACGGCGTGGGCACCCCCGACCCCGCCTCAGGCC
AAGCCCGACCGCCGGGGGTCGCCGGTCTCGTCTTCTGAATCGGGTGCTGC
CGCCGCCGCCGGCAGCGGTGGTTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9438:5621..5845-

>mRNA_Ecto-sp13_S_contig9438.21045.1 ID=mRNA_Ecto-sp13_S_contig9438.21045.1|Name=mRNA_Ecto-sp13_S_contig9438.21045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9438:5621..5845- (Ectocarpus species13 EcNAP12_S_4_19m)
CACCAGGCGTTGCCGGAGTGGCCCATCGCCCTGCTAGACATCTACATGCA
CGACGCGCTGGGAGGGAGGCAGTGGGCCTCCCACTCCGCCTGTAAGCCGT
TCGTGGACAACGTCCGCACGGCGTGGGCACCCCCGACCCCGCCTCAGGCC
AAGCCCGACCGCCGGGGGTCGCCGGTCTCGTCTTCTGAATCGGGTGCTGC
CGCCGCCGCCGGCAGCGGTGGTTCT
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