mRNA_Ecto-sp13_S_contig94325.21038.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig94325.21038.1
Unique NamemRNA_Ecto-sp13_S_contig94325.21038.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig94325.21038.1 vs. uniprot
Match: D7FGU3_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU3_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.610e-16
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    1 FDGVPASIPGRIEGEEYDYGGEGVAYSDTDAGNNGGVSRKDENVRI 138
            FDGVPA+IPGRIEGEE+DYGGEGV YSDTDAGNNGG  R  ENV I
Sbjct:  761 FDGVPATIPGRIEGEEFDYGGEGVGYSDTDAGNNGGQFRPSENVDI 806          
BLAST of mRNA_Ecto-sp13_S_contig94325.21038.1 vs. uniprot
Match: A0A6H5JFJ7_9PHAE (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.350e-15
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    1 FDGVPASIPGRIEGEEYDYGGEGVAYSDTDAGNNGGVSRKDENVRI 138
            F+G+PA+IPGR+EGEE+DYGGEGV YSDTDAGNNGG  R  ENV I
Sbjct:  581 FEGIPATIPGRVEGEEFDYGGEGVGYSDTDAGNNGGQFRTSENVDI 626          
BLAST of mRNA_Ecto-sp13_S_contig94325.21038.1 vs. uniprot
Match: UPI001F3C47B9 (carbohydrate-binding protein n=1 Tax=Chitinophaga filiformis TaxID=104663 RepID=UPI001F3C47B9)

HSP 1 Score: 61.6 bits (148), Expect = 8.540e-10
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    1 FDGVPASIPGRIEGEEYDYGGEGVAYSDTDAGNNGGVSRKDENVRI 138
            ++G P +IPG+IE EEYD GG+G+AY+DTDA NNGG+ R  E V +
Sbjct:  397 YNGSPLAIPGKIEAEEYDKGGQGIAYNDTDASNNGGLFRPSEGVDL 442          
BLAST of mRNA_Ecto-sp13_S_contig94325.21038.1 vs. uniprot
Match: X0RZV0_9ZZZZ (Glyco_hydro_3_C domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0RZV0_9ZZZZ)

HSP 1 Score: 61.2 bits (147), Expect = 1.140e-9
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    1 FDGVPASIPGRIEGEEYDYGGEGVAYSDTDAGNNGGVSRKDE 126
            F+G P++IPG+IE E++D GGEGVAY DTDAGNNGG  R ++
Sbjct:  310 FNGTPSAIPGKIEAEDFDTGGEGVAYHDTDAGNNGGQYRAED 351          
BLAST of mRNA_Ecto-sp13_S_contig94325.21038.1 vs. uniprot
Match: A0A6H5JEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.970e-9
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    1 FDGVPASIPGRIEGEEYDYGGEGVAYSDTDAGNNGGVSRKDENVRIVCG 147
            + G+PA IPG ++ E++D+GGEGV+YSDT  GN+GGV R +E+V I  G
Sbjct:  105 YGGIPAVIPGMVQAEKFDHGGEGVSYSDTTPGNSGGVFRPNEDVDISGG 153          
BLAST of mRNA_Ecto-sp13_S_contig94325.21038.1 vs. uniprot
Match: D8LL13_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 2.980e-9
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    1 FDGVPASIPGRIEGEEYDYGGEGVAYSDTDAGNNGGVSRKDENVRIVCG 147
            + G+PA IPG ++ E++D+GGEGV+YSDT  GN+GGV R +E+V I  G
Sbjct:  853 YGGIPAVIPGMVQAEKFDHGGEGVSYSDTTPGNSGGVFRPNEDVDISGG 901          
BLAST of mRNA_Ecto-sp13_S_contig94325.21038.1 vs. uniprot
Match: A0A317M5T5_9BACT (Putative secreted protein (Por secretion system target) n=1 Tax=Chitinophaga sp. S165 TaxID=2135462 RepID=A0A317M5T5_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 5.580e-9
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    1 FDGVPASIPGRIEGEEYDYGGEGVAYSDTDAGNNGGVSRKDENVRI 138
            F+G P  IPG+IE EEYD GG+GVAYSD D+ NNGG+ R  E V +
Sbjct:  397 FNGTPLIIPGKIETEEYDKGGQGVAYSDADSTNNGGLFRPSEGVDL 442          
BLAST of mRNA_Ecto-sp13_S_contig94325.21038.1 vs. uniprot
Match: A0A3N5W2E5_9BACT (Carbohydrate-binding protein (Fragment) n=1 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A3N5W2E5_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 3.520e-8
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    1 FDGVPASIPGRIEGEEYDYGGEGVAYSDTDAGNNGGVSRKDENVRI 138
            + GVP ++P RIE E+YD GGEG+AY DTD GNNG   R  E+V +
Sbjct:   93 YHGVPFALPTRIEAEDYDAGGEGIAYHDTDPGNNGNQYRTSEDVDV 138          
BLAST of mRNA_Ecto-sp13_S_contig94325.21038.1 vs. uniprot
Match: A0A1G9TN35_9BACT (Por secretion system C-terminal sorting domain-containing protein n=1 Tax=Catalinimonas alkaloidigena TaxID=1075417 RepID=A0A1G9TN35_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 3.640e-8
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    1 FDGVPASIPGRIEGEEYDYGGEGVAYSDTDAGNNGGVSRKDENVRI-VCG 147
            + GVP  IPGRIE E+YD GG+ +AYSD+D+ N+GG  R DE V +  CG
Sbjct:  318 YGGVPWPIPGRIESEDYDEGGQAIAYSDSDSTNHGGQYRPDEFVDVETCG 367          
BLAST of mRNA_Ecto-sp13_S_contig94325.21038.1 vs. uniprot
Match: A0A5B2VVK5_9BACT (Carbohydrate-binding protein n=1 Tax=Chitinophaga agrisoli TaxID=2607653 RepID=A0A5B2VVK5_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 3.650e-8
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    1 FDGVPASIPGRIEGEEYDYGGEGVAYSDTDAGNNGGVSRKDENVRI 138
            F+G P ++PGRIE E+YD GG+G+AYSD D  N GG  R +E V +
Sbjct:  397 FNGTPFTLPGRIEAEQYDNGGQGIAYSDADTANQGGQFRPNEGVDL 442          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig94325.21038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGU3_ECTSI3.610e-1682.61Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
A0A6H5JFJ7_9PHAE2.350e-1576.09Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. ... [more]
UPI001F3C47B98.540e-1058.70carbohydrate-binding protein n=1 Tax=Chitinophaga ... [more]
X0RZV0_9ZZZZ1.140e-964.29Glyco_hydro_3_C domain-containing protein (Fragmen... [more]
A0A6H5JEN4_9PHAE2.970e-955.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL13_ECTSI2.980e-955.10Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
A0A317M5T5_9BACT5.580e-960.87Putative secreted protein (Por secretion system ta... [more]
A0A3N5W2E5_9BACT3.520e-856.52Carbohydrate-binding protein (Fragment) n=1 Tax=Ca... [more]
A0A1G9TN35_9BACT3.640e-856.00Por secretion system C-terminal sorting domain-con... [more]
A0A5B2VVK5_9BACT3.650e-854.35Carbohydrate-binding protein n=1 Tax=Chitinophaga ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig94325contigEcto-sp13_S_contig94325:291..440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score80.9
Seed ortholog evalue1.9e-13
Seed eggNOG ortholog2880.D7FGU3
Model size150
KEGG koko:K01180
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.chitin catabolic process
EggNOG OGsCOG5498@1,KOG2254@2759
EC3.2.1.6
Cds size150
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464211.1994069-CDS-Ecto-sp13_S_contig94325:290..4401681464211.1994069-CDS-Ecto-sp13_S_contig94325:290..440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig94325 291..440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig94325.21038.1prot_Ecto-sp13_S_contig94325.21038.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig94325 291..440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig94325.21038.1

>prot_Ecto-sp13_S_contig94325.21038.1 ID=prot_Ecto-sp13_S_contig94325.21038.1|Name=mRNA_Ecto-sp13_S_contig94325.21038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
FDGVPASIPGRIEGEEYDYGGEGVAYSDTDAGNNGGVSRKDENVRIVCG*
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mRNA from alignment at Ecto-sp13_S_contig94325:291..440+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig94325.21038.1 ID=mRNA_Ecto-sp13_S_contig94325.21038.1|Name=mRNA_Ecto-sp13_S_contig94325.21038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig94325:291..440+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGACGGCGTCCCTGCTTCCATCCCGGGCAGAATAGAGGGGGAGGAATA CGATTACGGAGGGGAGGGTGTGGCATACTCGGACACGGACGCAGGCAACA ACGGAGGAGTGAGTCGGAAGGACGAGAATGTCAGAATAGTGTGTGGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig94325:291..440+

>mRNA_Ecto-sp13_S_contig94325.21038.1 ID=mRNA_Ecto-sp13_S_contig94325.21038.1|Name=mRNA_Ecto-sp13_S_contig94325.21038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig94325:291..440+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGACGGCGTCCCTGCTTCCATCCCGGGCAGAATAGAGGGGGAGGAATA
CGATTACGGAGGGGAGGGTGTGGCATACTCGGACACGGACGCAGGCAACA
ACGGAGGAGTGAGTCGGAAGGACGAGAATGTCAGAATAGTGTGTGGGTAA
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