mRNA_Ecto-sp13_S_contig9409.21003.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9409.21003.1
Unique NamemRNA_Ecto-sp13_S_contig9409.21003.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9409.21003.1 vs. uniprot
Match: D7G395_ECTSI (Possible MAPK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G395_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 9.280e-52
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 1
Query:    1 VVQIELSQEERRRLLLFITGTDRLPEAGCETLSIEIPFEIPGGSKDIETSRLAATKSLGQVPTAHTCDNVLELPNYWMLLMRHEGRDEKTQLSDVSVGD 297
            VVQIELS EERRRLLLFITGTDRLPEAGCETLSIEIPFE+PGGSKDIET+RLAATKSLGQVPTAHTCDN+LELPNYWMLLMRHEGRDEKTQLSDVSVGD
Sbjct: 2360 VVQIELSPEERRRLLLFITGTDRLPEAGCETLSIEIPFEVPGGSKDIETARLAATKSLGQVPTAHTCDNILELPNYWMLLMRHEGRDEKTQLSDVSVGD 2458          
BLAST of mRNA_Ecto-sp13_S_contig9409.21003.1 vs. uniprot
Match: A0A835ZDJ6_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ6_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 7.180e-17
Identity = 56/125 (44.80%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   25 EERRRLLLFITGTDRLPEAGCETLSIEI---PFEIPGGSKDIETSRLAATKSLGQVPTAHTCDNVLELPNYWMLLMRHEGRDEKTQL--SDVSVGDRERLESRLREILAGRLRVALNNATGYALD 384
            +E+  LLLFITG  RLP    E ++IE+   P E   GS    ++  AA   LG+VP AHTCDNVLE+P+YW  L+   G D K  L  S   +GD   L  +LR+ L  +L +A+ NA GY LD
Sbjct:   64 QEKWGLLLFITGVRRLPPPKTELMAIELQYMPPEARAGSNRSASASDAAQSLLGRVPCAHTCDNVLEVPDYWTALVTEAGFDPKRGLPASAKLMGD---LRQKLRKHLRDKLLLAIANAQGYGLD 185          
BLAST of mRNA_Ecto-sp13_S_contig9409.21003.1 vs. uniprot
Match: A0A061SDF5_9CHLO (Ubiquitin-protein ligase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SDF5_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 2.960e-16
Identity = 52/123 (42.28%), Postives = 71/123 (57.72%), Query Frame = 1
Query:   19 SQEERRRLLLFITGTDRLPEAGCETLSIEIPFEIPGGSKDIETSRLAATKSLGQVPTAHTCDNVLELPNYWMLLMRHEGRDEKTQLSDVSVGDRERLESRLREILAGRLRVALNNATGYALDD 387
            S E +RR +LF+TG++RLP  G E L +E+PF        +  S     + LG +P AHTC+N+LELPNYW  L+R E   E    S +S   R +L   L +IL  RLR+A+ N   Y LD+
Sbjct:  187 SPELKRRFVLFVTGSERLPLPGTELLRVELPF--------VAFSLRDHHRMLGMLPQAHTCENILELPNYWEALLRTE-HPEAEDASALSESQRAKLFQSLHKILDERLRLAIMNCDSYGLDE 300          
BLAST of mRNA_Ecto-sp13_S_contig9409.21003.1 vs. uniprot
Match: A0A7S3ZUA9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUA9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.760e-16
Identity = 76/239 (31.80%), Postives = 114/239 (47.70%), Query Frame = 1
Query:   16 LSQEERRRLLLFITGTDRLPEAGCETLSIEIPFEIPGGSKDIETSRLAATKSLGQVPTAHTCDNVLELPNYWMLLMRHEGRDEKTQLSDVSVGDRE--RLESRLREILAGRLRVALNNATGYALDDLDDESDADNTRNSLLTAEGSADIGVEIPEGTLDAGRD-----DGRVTVDSDEEVFPEIPSLDDDRNEEQGVTTAGRGSTSTPSKRTASAVDTAGSDDDEDFVSFLDREKKARN 711
            L+  +RR+LL+F+TG  RLP    E L++E+PF +P G   ++  R    + L  VP +HTCDN+LELPNYW  L++ +  + +        G RE   LE  LR I+  +L VAL+NA GY LD L+         ++L  A             +  A RD     D +     DEE  P +P L +D ++   +      +T+ PS ++           D+D    LD  K+  N
Sbjct: 1531 LTPAQRRKLLVFVTGVSRLPARHAEFLTVELPF-LPFG---VDEQR----RMLAMVPQSHTCDNILELPNYWEALLKTKTDEARPPRR----GSRECNALERELRRIVREKLLVALDNAVGYGLDALEPH-----VTHALACAAAXXXXXXXXXXASSRAMRDARASDDAQYDPFDDEESIPSLPELKEDDDDPIPMLQEATAATTRPSLQS-----------DDDIPDLLDAPKQEDN 1741          
BLAST of mRNA_Ecto-sp13_S_contig9409.21003.1 vs. uniprot
Match: D8UCH3_VOLCA (HECT domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UCH3_VOLCA)

HSP 1 Score: 87.8 bits (216), Expect = 8.000e-15
Identity = 60/148 (40.54%), Postives = 76/148 (51.35%), Query Frame = 1
Query:    4 VQIELSQEERRRLLLFITGTDRLPEAGCETLSIEIPFEIPGGSKDIETSRLAATKSLGQVPTAHTCDNVLELPNYWMLLMRHEG-RDEKTQL----SDVSVGDRERLESRLREILAGRLRVALNNATGYALD------DLDDESDADN 414
            V  E S E R R + F+TGT RLP  G E L I+ PF   G ++   T        LG +P AHTCDN+LELPNYW  L+   G R     +    S ++ G  E L   +R IL  RL +A+ N  GY LD      D DD++ A N
Sbjct:  624 VLAEWSPERRLRFVEFVTGTSRLPLPGSELLKIQAPFVAMGAAEHKAT--------LGMLPQAHTCDNLLELPNYWESLLAVRGVRGGPAAVARGTSQLTEGQVEELRGEVRRILENRLEMAVLNFQGYGLDERSGGRDDDDDNGAGN 763          
BLAST of mRNA_Ecto-sp13_S_contig9409.21003.1 vs. uniprot
Match: A0A7S3Y0V5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0V5_HETAK)

HSP 1 Score: 82.8 bits (203), Expect = 1.730e-14
Identity = 55/154 (35.71%), Postives = 78/154 (50.65%), Query Frame = 1
Query:    4 VQIELSQEERRRLLLFITGTDRLPEAGCETLSIEIPFEIPGGSKDIETSRLAATKSLGQVPTAHTCDNVLELPNYWMLLMRHEGRDEKTQLSDVSVGDRERLESRLREILAGRLRVALNNATGYALDDLDDESDADNTRNSLLTAEGSADIGVE 465
            V   LS E +R+LL+F+TG   LP    E L+IE PF +P    D +       K LG +P +HTCDN+LELP+Y   L   EGR                   RLRE+L G+L +A+ N+ GY LD++      ++    LL++   A  G +
Sbjct:   91 VAAALSPELKRQLLVFVTGVSTLPAPFTEFLTIEQPF-VPLHKDDYK-------KILGMLPQSHTCDNILELPDYAGALRALEGRPPSP--------------GRLRELLRGKLLLAVQNSEGYGLDEVTSSGGGEDALRGLLSSRRGARRGAD 222          
BLAST of mRNA_Ecto-sp13_S_contig9409.21003.1 vs. uniprot
Match: A0A8K1C6F0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6F0_PYTOL)

HSP 1 Score: 86.7 bits (213), Expect = 2.270e-14
Identity = 51/118 (43.22%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   31 RRRLLLFITGTDRLPEAGCETLSIEIPFEIPGGSKDIETSRLAATKSLGQVPTAHTCDNVLELPNYWMLLMRHEGRDEKTQLSDVSVGDRERLESRLREILAGRLRVALNNATGYALD 384
            +R+L+ FITG + LP+AG E L IE+PF +  G+  I+T        L  +P +HTCDN LELPNYW  L   +  DE TQ           LE  L E+LA +LR A   + GY LD
Sbjct: 1506 KRKLVKFITGVETLPQAGSEFLRIEMPFAVVTGADHIKT--------LQMLPQSHTCDNTLELPNYWHALCWRDKHDE-TQSHPG-------LEKELEELLANKLRAAAEYSEGYGLD 1607          
BLAST of mRNA_Ecto-sp13_S_contig9409.21003.1 vs. uniprot
Match: A0A8J4C3Q5_9CHLO (HECT domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C3Q5_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 3.350e-14
Identity = 57/136 (41.91%), Postives = 71/136 (52.21%), Query Frame = 1
Query:    4 VQIELSQEERRRLLLFITGTDRLPEAGCETLSIEIPFEIPGGSKDIETSRLAATKSLGQVPTAHTCDNVLELPNYWMLLMRHEG-RDEKT-------QLSDVSVGDRERLESRLREILAGRLRVALNNATGYALDD 387
            V  E   E R R + F+TGT RLP  G E L I+ PF   G ++   T        LG +P AHTCDN+LELPNYW  L+   G R   T       QL++  + D   L +  R ILA RL VA+ N  GY LD+
Sbjct:  622 VMAEWPPERRLRFVEFVTGTSRLPLPGSELLKIQAPFVAMGVAEHRAT--------LGMLPQAHTCDNLLELPNYWESLLAVRGVRGGPTAVARGTAQLTEEQLAD---LRAETRRILADRLEVAVLNFQGYGLDE 746          
BLAST of mRNA_Ecto-sp13_S_contig9409.21003.1 vs. uniprot
Match: A0A150GTT8_GONPE (HECT domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GTT8_GONPE)

HSP 1 Score: 85.5 bits (210), Expect = 4.020e-14
Identity = 54/134 (40.30%), Postives = 69/134 (51.49%), Query Frame = 1
Query:   25 EERRRLLLFITGTDRLPEAGCETLSIEIPFEIPGGSKDIETSRLAATKSLGQVPTAHTCDNVLELPNYWMLLMRHEG-RDEKTQLS----DVSVGDRERLESRLREILAGRLRVALNNATGYALDDLDDESDAD 411
            E R R + F+TGT RLP  G E L I+ PF   G S+   T        LG +P AHTCDN+LELPNYW  L+   G R     ++     V+ G    L +  R IL  RL +A++N  GY LD+     D D
Sbjct:  447 ERRLRFVEFVTGTSRLPLPGSELLKIQAPFVAMGASEHKAT--------LGMLPQAHTCDNLLELPNYWESLLAVRGVRGGPAAIARGTTTVTDGQLAELRAEARRILDDRLEIAVSNFQGYGLDERSGPDDDD 572          
BLAST of mRNA_Ecto-sp13_S_contig9409.21003.1 vs. uniprot
Match: A0A8J4F060_9CHLO (HECT domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F060_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 7.920e-14
Identity = 57/136 (41.91%), Postives = 71/136 (52.21%), Query Frame = 1
Query:    4 VQIELSQEERRRLLLFITGTDRLPEAGCETLSIEIPFEIPGGSKDIETSRLAATKSLGQVPTAHTCDNVLELPNYWMLLMRHEG-RDEKT-------QLSDVSVGDRERLESRLREILAGRLRVALNNATGYALDD 387
            V  E   E R R + F+TGT RLP  G E L I+ PF   G ++   T        LG +P AHTCDN+LELPNYW  L+   G R   T       QL++  + D   L +  R ILA RL VA+ N  GY LD+
Sbjct:  621 VMAEWPPERRLRFVEFVTGTPRLPLPGSELLKIQAPFVAMGVAEHRAT--------LGMLPQAHTCDNLLELPNYWESLLAVRGVRGGPTAVARGTAQLTEEQMTD---LRAETRRILADRLEVAVLNFQGYGLDE 745          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9409.21003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G395_ECTSI9.280e-5295.96Possible MAPK n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A835ZDJ6_9STRA7.180e-1744.80HECT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A061SDF5_9CHLO2.960e-1642.28Ubiquitin-protein ligase n=1 Tax=Tetraselmis sp. G... [more]
A0A7S3ZUA9_9STRA5.760e-1631.80Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D8UCH3_VOLCA8.000e-1540.54HECT domain-containing protein n=1 Tax=Volvox cart... [more]
A0A7S3Y0V5_HETAK1.730e-1435.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8K1C6F0_PYTOL2.270e-1443.22Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8J4C3Q5_9CHLO3.350e-1441.91HECT domain-containing protein n=2 Tax=Volvox reti... [more]
A0A150GTT8_GONPE4.020e-1440.30HECT domain-containing protein n=1 Tax=Gonium pect... [more]
A0A8J4F060_9CHLO7.920e-1441.91HECT domain-containing protein n=2 Tax=Volvox afri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9409contigEcto-sp13_S_contig9409:162..5853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score197.2
Seed ortholog evalue1.3e-47
Seed eggNOG ortholog2880.D7G395
Model size1278
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.cyclin-dependent protein serine/threonine kinase activity
EggNOG OGsKOG0593@1,KOG0593@2759
Cds size1086
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9409.21003.1prot_Ecto-sp13_S_contig9409.21003.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9409 354..5853 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464208.3280575-UTR-Ecto-sp13_S_contig9409:161..3531681464208.3280575-UTR-Ecto-sp13_S_contig9409:161..353Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9409 162..353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464208.3421175-CDS-Ecto-sp13_S_contig9409:353..7591681464208.3421175-CDS-Ecto-sp13_S_contig9409:353..759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9409 354..759 -
1681464208.35208-CDS-Ecto-sp13_S_contig9409:1132..12111681464208.35208-CDS-Ecto-sp13_S_contig9409:1132..1211Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9409 1133..1211 -
1681464208.365263-CDS-Ecto-sp13_S_contig9409:1563..16331681464208.365263-CDS-Ecto-sp13_S_contig9409:1563..1633Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9409 1564..1633 -
1681464208.3772-CDS-Ecto-sp13_S_contig9409:4077..42051681464208.3772-CDS-Ecto-sp13_S_contig9409:4077..4205Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9409 4078..4205 -
1681464208.3983202-CDS-Ecto-sp13_S_contig9409:4346..44521681464208.3983202-CDS-Ecto-sp13_S_contig9409:4346..4452Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9409 4347..4452 -
1681464208.4126887-CDS-Ecto-sp13_S_contig9409:4889..50811681464208.4126887-CDS-Ecto-sp13_S_contig9409:4889..5081Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9409 4890..5081 -
1681464208.427634-CDS-Ecto-sp13_S_contig9409:5748..58531681464208.427634-CDS-Ecto-sp13_S_contig9409:5748..5853Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9409 5749..5853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9409.21003.1

>prot_Ecto-sp13_S_contig9409.21003.1 ID=prot_Ecto-sp13_S_contig9409.21003.1|Name=mRNA_Ecto-sp13_S_contig9409.21003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=362bp
VVQIELSQEERRRLLLFITGTDRLPEAGCETLSIEIPFEIPGGSKDIETS
RLAATKSLGQVPTAHTCDNVLELPNYWMLLMRHEGRDEKTQLSDVSVGDR
ERLESRLREILAGRLRVALNNATGYALDDLDDESDADNTRNSLLTAEGSA
DIGVEIPEGTLDAGRDDGRVTVDSDEEVFPEIPSLDDDRNEEQGVTTAGR
GSTSTPSKRTASAVDTAGSDDDEDFVSFLDREKKARNIGDGGEDDVIIAA
FDGRPEREQKSDENVDLEIERVQEFGSSRPNEDACPQGDEVVEGRNDDVG
THQSGENRHSGSGESREKLVPEGNIPGSVGVAGSNGSGCGDGYFDDDDID
FDVHDLEDVEM*
back to top

mRNA from alignment at Ecto-sp13_S_contig9409:162..5853-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9409.21003.1 ID=mRNA_Ecto-sp13_S_contig9409.21003.1|Name=mRNA_Ecto-sp13_S_contig9409.21003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5692bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9409:162..5853- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTCCAGATAGAGCTCTCCCAAGAGGAACGACGCCGTCTCTTGCTTTT CATCACCGGAACGGACCGTCTACCAGAGGCGGGATGCGAAACCCTGTCCA TCGAGGTACTGTTTGTCGCCCCTCAGCCGCTGCCCAACCTGTGAATGCGT GCGCCTCTCTTGCGGGACCCCACCGAACGCCATAGCTGCCAAGTGCAGAA CATGGCGCCACTCATGGTAACCCTTCTGTAGCGCTCTCTGTTCTTCTTTT TTCGCGTTGGGTTCTTCTTTGCTCTTCTTGTGTTTTCGCGACGCACAATT TTGGCCCATCCCGATGTAGTGCTGCCATGGGCGCCTGGCTACCACCTACA TAGCGGTACTAACACAGTCGCCCGGTTTCCCACAGCTTCCTGCTGGATTA TGCAGTGTATCCAATACTCACTAGGTTCAGGAGGAGTAGAAACACTTGTG AAAATCACGGTTCCCGCCCCTCCGTCCTGGCGGTACCTCGTGCCTTGAGA ACCCACGTCTTGATCAAAAATTGGAGCCCACCCGACTAGACCCTTGGAGG TTAGGTGGGGAATGAGACGGCGGCAGTGGTGGACCTGTATTCACGTTATG AAACTAAATATGTCGGACCAGAACATTGCAGAGTGATTCACATCATGTAC CACTGCCACTCGGTGCTGGGTGATTTGTGGTTCTTTTATTCGCACCATAG CCATCCTCAACTCTGTCAGCACCAATTCTGCCATCTTACGTGAACATTCA ACCGCATGCTCCTTGGACGAAGATCCCTTTCGAAATTCCTGGAGGAAGCA AGGACATCGAGACGAGCAGGCTGGCGGCGACCAAGTCTCTCGGACAGGTC CCCACGGCGCATACTTGCGACAATGTTCTGGAGTTGCCAAACTACTGGAT GCTGTTAATGAGGCATGAGGGGCGGGACGAAAAGACGCAGCTGTCGGATG TTTCCGTAGGAGATGTGAGTTTGGTCGTCTTCGACGAGGGTTTGAACACG CCTACAACGTGGAGTCAGCCCCATGGCGTATACGTTGGAGGCATTCGACG GCCGAACGGTATTGACGATGAGGAAAGAGGAACAGTTCGAACGAAGGAAA AGACACGAAGAATGCGTGTACGCGCCCAGCTCACGAAATACTGTATCGCC GAGAATCATGTCAATGATTCATGGTTAGTTTTGGCGAATTTGTATCGTCA ACTGTTGTTGGTTTCCTTGCGCTTTCACCTCACCCTCCTTTTCCGCTTCT CGAATACTGATGTCACGGTGTGGCCACCATGAATGAGGCTTGAATCTCGG GGCTTCTTGCAGGCAAGTCGGTGGCCTAAACCAAAACCTTTTCAGCAAGA ACCGATCCTTGCACCTTCGCACCCCTGCCATTTATGTTTTACTGGGTCTA GCGAGAGAGATTGGAATCAAGGTTGCGAGAGATCTTGGCCGGCAGGCTTA GAGTTGCCTTGAACAATGCCACGGGGTACGCCTTGGACGACCTCGACGAC GAGTCCGGTGAGTGTATGGTATCAGAAATAGACTGGGTTCAAAAGCCGTT TTTGCACCGTTGTACACCGAGGCGACCTTCGCACGAGGCATAGATTCAAC CATAAACAGTGTGAATCATGCCTCCTTGGTTGTCCTTAATCGACGCAGAC GCTGACAACACCAGAAACAGCCTGTTGACCGCAGAAGGTTCGGCGGATAT TGGAGTGGAGATCCCAGAAGGAACACTAGATGCTGGAAGGGACGATGGGC GGGTGACTGTTGACAGCGACGAAGAGGTGACGTTTTCCGCCTTATATCGT GTATAGAACTATTCCAAGGCTGTCTCCGCTTCATGGTTCTCTAAACCTTC GGGAGTGCGCAGCACTGCCACCAACGTTTCCGTTTAAGTAATAGCGTACT ATGCAGCACGTCGTCCGATCCCTCCGCGACTCGTTCAGGCGTGTGCCACA TTATTGTTGATATTTTGTGAGCGTGATCCTCCAAGGCCTCCCTGTGTCGG TATTCTGGTGGGAGTGGAACCCTGTGGACCCACAAAGACTTGGTTGAGAT TCACCTTTTTTTTGGCTTCGCAGCTTCGCGCGGACAATCTGTCCATCTCC TCCAGGTTCGTCTACTCCTATGGCGCTTTTGCCCGAAATCGTGCAGTTTG TTCCCGTCCTTGCCGCACCCGCCGTGGTGGCCTTTGAGATGTAATGCAGT CCAGTTTACAGTGTGCGTCGATCGCACCGGTGGTTCAGTCGGTAACGTCG GAACCTTCGGCGTTCGAAGGGACTTCGACGCTCGGCGTAGTAAAGAAAAC TGTCTTTTCGATCACGGTTTGTGCCCAAGCATCGATTTTTCCAAGAACTC GAATTCATGATTGACGAGAAAACGGTAGTGGGGACGCGATAAGGACCACG TGGATAGGTTCGTTCTTCCAAGAACAAAAGAAAAAAATTTCAAGTATTGC AAGATGGTGTGAGATTGGTCAATCATTCCCCATTCTACCATATCTTTAAT TAGTCCGGCAGAGCGGGAGATGGGACGATACGGGGGCGATCGACAGGACA AGTGCCTGGTGAAAAGGGAAAGAAGATTCAGTGCTTGAGCACCGGCCAAG CTCTGACATTGACACGGTCAGCGCCGCCCCATTCACCACTGGCCGCAACC ACTGTAACCCAACATCTCCGCCATGACCAATACAACGCCAAGCGACAACG GTGCAACGCACCGTCCGAAGACAAAGAAAGGCCCGGGACGCGCTTCATCT TCAGACGAACTGTTGTAGCGGCCACGATGGGCGCGTTCATGCTGGTCTGA TTCGGCACGCGCTTCTTCAACGAGTCGTATATATTTGTTTAAGAAGCGCG TGCCGAATCAGACCAGCAAGAACATAAACGCGCCCGTCGTGGCCGCCCCA ATTCTTCTGAAGATGAAGAAGCGTCCCGGACCTTTGCCTTTGGACGGTGC GTTGTTGCGCCGTCGTCGATTGGCATTGTTTTGGTCATGGCGGAACTGTT GGGCAACAACAGCAGAACGCTTGGGGACAGCAGTGAATCAGGCCTGTGTC ACAAGGGTGCTGAAAAATGCCAAAGATTCTCCGGTTACGGCATCGATATA ACGAAAACCTGAGGATGCTGACATCTGAAGCACACAGAATGATGACACGC GCACGGATGTTTGCAGCCAACCCGTGGGGGGGGGGGGTACTCATTGTCGG GCATGCCGTAGTCGTTGGACCATTGACCTCGCATCCCTGCAAGGCCAGGA TAGAGCGCGCTGGGTTCTCACTAGACCAGGCTCTCACATCACCACGCACG AAGCGCCGTGACGTATTCGGCGAGTCGCATGAAGGGTGCGCTGCATGCTG CTAAGGGTTTTCGGAATCTTGTGCTTCCTTGCATACGGATGACAGCTGCC AATGACTTCATTTGTTCTCTTGTGCTTCCACTTCCAGAGACAGTCGTGAG GACTGAGCAACTGCCTAGAGGATGCTTGGCCAATTTAATACAACGCGTTG CGATCATCCCGTCTGTGCGGAGTGAGGATTCTCGACCCCGCACAACATAA TCAACTCGACCACCATTCAATATGGTTACCACAAAAAAAGACCGAGTACC CGGCCCCCCGCCCCCCGCCGGGCGAGCCGAATTTTTGGCTGTTTGTTCTC ATGGGGCTCAGGGCCCACTTCGCGCAACCTGCGTATGGGAGACACATCGT GTTCTACTTGTCGCGCCGTTAAACGCATTCTTTGAGTGGGTTCGGTGCGT TCTTGATGTGACACGTAAGTAACCGTTTAGCGCGATCATGGGTGCGGGTT AGTAAGAGAGGATCCTAAATGTAGCTCGCGTATAGGGCACCCAAAATAAA AGCGGTTTCCCCACCGCGGGCCCCCTTTGCTTTACTTAGGGTTAAGAGTA TCGTTTACCCCCCCCCTAACCGCCGAAAACCTCCCAAACAAGAAAATGGT ACCATGTAGAGGTCATGACGGATAAAATATTTACGGGCGCCCTTGCAAAG ACAAAACAAAAGAAAAGCGGGAACCTGGTTGCCGAGCTCAGAAGTGATAA CCCTTATTTTACAACGTCGTTGCCAAGCGACGAAAACCCATTCCCGACGG CCAACACCGAGTGGGGGGCAAATCCCAATATTCAGATCTGTATCGTCTCT TGAGGTACAGAACTCCGATGTTCACACAGCGCCCCCACCGCGACACGCTT CCAACACCCTGCGCTAGCAGGTCTTTCCCGAAATCCCTTCGCTTGATGAC GACCGCAATGAGGAGCAAGGGGTGACCACCGCGGGCAGAGGTACGCTTAC ATTTTTCACGCATGATACGGCAGAAGTGTTCCCCGGCTGGCTGGCCATTC GATCCTCTGAATACTGTCGAGAAAATATGGATGCAACGACGATAAAAATG TATTGCGAGTGATTGCCACTCATGTACATAGTCTATTTTCATACGTGAAC ATGTCTTGCAAGGGTCCTCACCGATTGCGACGAATGCCGATCTCAGAACT CCGAACAATCTGAAAGTTGCTCCAGACTGAGACATGCTTGGTCGCTGAGC ACTGAATGAATGATTCTAAAACGTTGCGGAACATAGTACAGTCTTGTTAG CACGAAATCGAACATTTCGATCACGCGGCTTACCCACTTCAGGTTCGACT TCGACGCCGTCAAAAAGAACAGCGTCAGCAGTTGATACCGCGGGGAGCGA CGATGACGAAGACTTCGTCAGGTAGTGTCCGCTGTAGCTCCAATGCAGCC AGTGTTTTGGTTCCCTCACATACTCAGAATTCAGGAGCCAAGCCGTATGC CACCCGTTGCTGCTTGCTTGTGATTGGGCGACACTCGGTGTGATCTTACA CATTGAATACAAAGTCAGCGTGGATGGAAACCAAAACCTTACAGTAGAAA CCGTTGCCTCTAACTATGCTGTAGATCTATTCGATAGTAGTCGCACAACT ACGGAATTCCTCGGTGTCCCGAACCGTGTATTCGTTCATTGAGACGCTTG CTATGTGTGGGGCTACCGTCGATGCTACCTGAAGCAGAAGCACAACCAGC TCAAAAAATCGCACGCTTCCCTTCTTCTATCCTCCACCACGTAGCTTCCT GGATCGAGAGAAAAAAGCGCGTAACATTGGTGACGGAGGTGAAGACGATG TGATCATTGCGGCGTTTGATGGAAGGCCTGAACGAGAGCAGAAAAGCGAT GAAAATGTCGACCTAGAGATTGAACGTGTGCAGGAATTCGGTAGTAGCCG GCCAAATGAAGATGCATGCCCGCAAGGGGACGAGGTTGTGGAAGGGAGAA ACGATGACGTAGGTACACACCAATCGGGTGAAAACCGACATAGTGGGTCC GGAGAATCGAGAGAGAAATTAGTGCCGGAGGGCAACATACCAGGTAGTGT TGGTGTGGCCGGCAGCAATGGCAGTGGCTGTGGAGACGGATATTTCGACG ATGATGACATCGACTTCGACGTTCATGACTTGGAGGATGTCGAGATGTGA ATGTGTACACCGCGTCGTAGAAAGGATAGGCAACAGGTAGTTCAAGCAGT TCGTATTGTTCTGTCGTCGATTTAGGTTCTCTTGTTGAACAGCGCACGGT ATTCGAGTCGCGTGTGTGGAATATTGCAGAAACGAAAACGATTTGTTAAC TCACTGACTTGAACCACAGTCACCGTACATCGAACTGGAGAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9409:162..5853-

>mRNA_Ecto-sp13_S_contig9409.21003.1 ID=mRNA_Ecto-sp13_S_contig9409.21003.1|Name=mRNA_Ecto-sp13_S_contig9409.21003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1086bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9409:162..5853- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTCCAGATAGAGCTCTCCCAAGAGGAACGACGCCGTCTCTTGCTTTT
CATCACCGGAACGGACCGTCTACCAGAGGCGGGATGCGAAACCCTGTCCA
TCGAGATCCCTTTCGAAATTCCTGGAGGAAGCAAGGACATCGAGACGAGC
AGGCTGGCGGCGACCAAGTCTCTCGGACAGGTCCCCACGGCGCATACTTG
CGACAATGTTCTGGAGTTGCCAAACTACTGGATGCTGTTAATGAGGCATG
AGGGGCGGGACGAAAAGACGCAGCTGTCGGATGTTTCCGTAGGAGATCGA
GAGAGATTGGAATCAAGGTTGCGAGAGATCTTGGCCGGCAGGCTTAGAGT
TGCCTTGAACAATGCCACGGGGTACGCCTTGGACGACCTCGACGACGAGT
CCGACGCTGACAACACCAGAAACAGCCTGTTGACCGCAGAAGGTTCGGCG
GATATTGGAGTGGAGATCCCAGAAGGAACACTAGATGCTGGAAGGGACGA
TGGGCGGGTGACTGTTGACAGCGACGAAGAGGTCTTTCCCGAAATCCCTT
CGCTTGATGACGACCGCAATGAGGAGCAAGGGGTGACCACCGCGGGCAGA
GGTTCGACTTCGACGCCGTCAAAAAGAACAGCGTCAGCAGTTGATACCGC
GGGGAGCGACGATGACGAAGACTTCGTCAGCTTCCTGGATCGAGAGAAAA
AAGCGCGTAACATTGGTGACGGAGGTGAAGACGATGTGATCATTGCGGCG
TTTGATGGAAGGCCTGAACGAGAGCAGAAAAGCGATGAAAATGTCGACCT
AGAGATTGAACGTGTGCAGGAATTCGGTAGTAGCCGGCCAAATGAAGATG
CATGCCCGCAAGGGGACGAGGTTGTGGAAGGGAGAAACGATGACGTAGGT
ACACACCAATCGGGTGAAAACCGACATAGTGGGTCCGGAGAATCGAGAGA
GAAATTAGTGCCGGAGGGCAACATACCAGGTAGTGTTGGTGTGGCCGGCA
GCAATGGCAGTGGCTGTGGAGACGGATATTTCGACGATGATGACATCGAC
TTCGACGTTCATGACTTGGAGGATGTCGAGATGTGA
back to top