mRNA_Ecto-sp13_S_contig94039.21000.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig94039.21000.1
Unique NamemRNA_Ecto-sp13_S_contig94039.21000.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig94039.21000.1 vs. uniprot
Match: A0A6H5JBQ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JBQ1_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 1.400e-79
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 1
Query:    1 ADVGAYFVGKSLGKTKLSAVSPAAGYASPNKTIEGLLGGLAASSLAATVGARLLRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYIFVKLILPLAAKLV 396
            ADVGAYFVGKSLGKTKLSAVSPAAGYASPNKTIEGLLGGLAASSLAAT+GARLLRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYIFVKLILPLAAKLV
Sbjct:  479 ADVGAYFVGKSLGKTKLSAVSPAAGYASPNKTIEGLLGGLAASSLAATIGARLLRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYIFVKLILPLAAKLV 610          
BLAST of mRNA_Ecto-sp13_S_contig94039.21000.1 vs. uniprot
Match: A0A836CA52_9STRA (Phosphatidate cytidylyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA52_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.450e-56
Identity = 93/131 (70.99%), Postives = 111/131 (84.73%), Query Frame = 1
Query:    1 ADVGAYFVGKSLGKTKLSAVSPAAGYASPNKTIEGLLGGLAASSLAATVGARLLRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYIFVKLILPLAAKL 393
            ADVGAYFVGK  G+TKLS +S +AG+ASPNKTIEGLLGG+A S+   T  A +L WP W+ TG  YGAMLC++GLVGDLTAS+FKRDAGFKDSG++LPGHGGYLDRVDSYIFTAPPAY+++ + LPL  +L
Sbjct:  335 ADVGAYFVGKRFGRTKLSTISKSAGHASPNKTIEGLLGGMAFSTAMGTFAAYMLSWPMWYLTGAIYGAMLCVIGLVGDLTASMFKRDAGFKDSGNILPGHGGYLDRVDSYIFTAPPAYLYITVALPLFRRL 465          
BLAST of mRNA_Ecto-sp13_S_contig94039.21000.1 vs. uniprot
Match: W7U3H9_9STRA (Phosphatidate cytidylyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3H9_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.860e-51
Identity = 85/131 (64.89%), Postives = 108/131 (82.44%), Query Frame = 1
Query:    1 ADVGAYFVGKSLGKTKLSAVSPAAGYASPNKTIEGLLGGLAASSLAATVGARLLRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYIFVKLILPLAAKL 393
            AD+GAY  GK+LG+TKLS +S AAG  SPNKT+EGLLGG  ++++ AT+ +RLL WP WW +GPAYG ML ++ LVGDLTAS+FKRDAG KDSG LLPGHGG LDR+DS++FT P AY+FV ++LPLA ++
Sbjct:  280 ADIGAYATGKTLGRTKLSTLSTAAGATSPNKTVEGLLGGFVSATVVATLMSRLLNWPLWWLSGPAYGLMLGVIALVGDLTASMFKRDAGLKDSGGLLPGHGGILDRIDSFMFTGPFAYLFVLVVLPLARRI 410          
BLAST of mRNA_Ecto-sp13_S_contig94039.21000.1 vs. uniprot
Match: A0A0G4EIK6_VITBC (Phosphatidate cytidylyltransferase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EIK6_VITBC)

HSP 1 Score: 166 bits (420), Expect = 5.250e-47
Identity = 85/131 (64.89%), Postives = 101/131 (77.10%), Query Frame = 1
Query:    4 DVGAYFVGKSLGKTKLSAVSPAAGYASPNKTIEGLLGGLAASSLAATVGARLLRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYIFVKLILPLAAKLV 396
            DV AYF+GKS G+ KL+++SPAAG ASPNKT+EG LGGL  S L + +GA L+ WP W  TG  YG ML +VGLVGDLTAS FKRDAG KDSG +LPGHGG LDRVDSY+ TA P+ IFV+ +LP   K+V
Sbjct:  317 DVAAYFLGKSFGRRKLASISPAAGAASPNKTVEGALGGLLMSVLMSLLGAWLMHWPIWPFTGALYGTMLAVVGLVGDLTASTFKRDAGLKDSGHILPGHGGLLDRVDSYMLTATPSLIFVQYLLPALRKIV 447          
BLAST of mRNA_Ecto-sp13_S_contig94039.21000.1 vs. uniprot
Match: A0A7R9UDX9_9STRA (Phosphatidate cytidylyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDX9_9STRA)

HSP 1 Score: 166 bits (419), Expect = 3.170e-46
Identity = 84/122 (68.85%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    1 ADVGAYFVGKSLGKTKLSAVSPAAGYASPNKTIEGLLGGLAASSLAATVGARLLRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYIFVK 366
            ADVGAY VG+  G+T LS +SPAAG ASPNKT+EGLLGG A + L + +GA +++WP W  TG AYG ML L+ L+GDLTAS+FKRDAG KDSG+LLPGHGG LDRVDSYIFTA P+YIFV+
Sbjct:  400 ADVGAYAVGRLFGRTPLSRISPAAGSASPNKTVEGLLGGAAFACLTSLLGAWVMQWPHWKLTGLAYGLMLTLIALLGDLTASMFKRDAGLKDSGNLLPGHGGLLDRVDSYIFTAVPSYIFVR 521          
BLAST of mRNA_Ecto-sp13_S_contig94039.21000.1 vs. uniprot
Match: A0A7S0VRI1_9CRYP (Phosphatidate cytidylyltransferase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VRI1_9CRYP)

HSP 1 Score: 163 bits (412), Expect = 6.070e-46
Identity = 82/124 (66.13%), Postives = 95/124 (76.61%), Query Frame = 1
Query:    1 ADVGAYFVGKSLGKTKLSAVSPAAGYASPNKTIEGLLGGLAASSLAATVGARLLRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYIFVKLI 372
            ADVGAYF GK+ G+TKLS  +      SPNKT+EG LGG+A S L  T GARL+RWP WW TGPAYG M+  +GL+GDLT S+FKRDAG KD+G+LLPGHGG LDRVDSY+ TA P Y FVK I
Sbjct:  307 ADVGAYFTGKNFGRTKLSEATGIT--ISPNKTVEGFLGGVALSCLFMTTGARLMRWPIWWFTGPAYGGMISSLGLLGDLTVSLFKRDAGVKDTGTLLPGHGGLLDRVDSYLLTAMPVYYFVKFI 428          
BLAST of mRNA_Ecto-sp13_S_contig94039.21000.1 vs. uniprot
Match: A0A7S2MB99_9STRA (Phosphatidate cytidylyltransferase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2MB99_9STRA)

HSP 1 Score: 154 bits (389), Expect = 9.480e-45
Identity = 75/130 (57.69%), Postives = 95/130 (73.08%), Query Frame = 1
Query:    4 DVGAYFVGKSLGKTKLSAVSPAAGYASPNKTIEGLLGGLAASSLAATVGARLLRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYIFVKLILPLAAKL 393
            DVG YF G+  GKTKL A+SPAAG  SPNKT+EG++GG   S + AT+GA + +WP W+  GP +G +L L+GLVGDLTAS+ KRDAG KD G L+P HGG +DRVDSYIFTAP  ++    ++P   KL
Sbjct:   81 DVGGYFAGRKFGKTKLGAISPAAGKTSPNKTVEGVIGGCTFSLVLATLGAWIQKWPYWYVLGPLHGVILALLGLVGDLTASMLKRDAGLKDFGDLIPEHGGIMDRVDSYIFTAPYGWLMCGYVIPALKKL 210          
BLAST of mRNA_Ecto-sp13_S_contig94039.21000.1 vs. uniprot
Match: A0A482SP91_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SP91_9ARCH)

HSP 1 Score: 151 bits (381), Expect = 1.000e-44
Identity = 78/124 (62.90%), Postives = 94/124 (75.81%), Query Frame = 1
Query:   22 VGKSLGKTKLSAVSPAAGYASPNKTIEGLLGGLAASSLAATVGARLLRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYIFVKLILPLAAKL 393
            +GK+ GK KLS  S AAG ASP KTIEG LGGL A +L + +GA +++WP W ATG  YG ML ++ LVGDLTAS+ KRDA  KDSGSLLPGHGG LDR+DSY+FTAP A+ F + +LP A KL
Sbjct:    1 MGKNFGKHKLSTFSSAAGAASPKKTIEGALGGLVACTLFSVLGAYVMQWPLWIATGTLYGIMLSVISLVGDLTASMMKRDAKMKDSGSLLPGHGGVLDRIDSYMFTAPAAFFFCRDVLPFALKL 124          
BLAST of mRNA_Ecto-sp13_S_contig94039.21000.1 vs. uniprot
Match: A0A7S2S7M6_9STRA (Phosphatidate cytidylyltransferase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S7M6_9STRA)

HSP 1 Score: 155 bits (393), Expect = 4.420e-44
Identity = 75/125 (60.00%), Postives = 96/125 (76.80%), Query Frame = 1
Query:    4 DVGAYFVGKSLGKTKLSAVSPAAGYASPNKTIEGLLGGLAASSLAATVGARLLRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYIFVKLILP 378
            DVGAYFVG+  GKTKL  ++PAAG  SPNKT+EG +GG   S++ AT+GA + +WP W+ TGP +GAML  +GLVGDLTAS+ KRDAG KD G L+P HGG +DRVDS++FTAP  +I  + I+P
Sbjct:  193 DVGAYFVGRKFGKTKLGEIAPAAGLTSPNKTVEGFIGGCLFSAVLATIGAWVQKWPYWFITGPLHGAMLGFLGLVGDLTASMLKRDAGLKDFGDLIPEHGGIMDRVDSFVFTAPYGWIMCQYIIP 317          
BLAST of mRNA_Ecto-sp13_S_contig94039.21000.1 vs. uniprot
Match: A0A7S0TS08_HEMAN (Phosphatidate cytidylyltransferase n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TS08_HEMAN)

HSP 1 Score: 160 bits (404), Expect = 4.510e-44
Identity = 80/124 (64.52%), Postives = 94/124 (75.81%), Query Frame = 1
Query:    1 ADVGAYFVGKSLGKTKLSAVSPAAGYASPNKTIEGLLGGLAASSLAATVGARLLRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGHGGYLDRVDSYIFTAPPAYIFVKLI 372
            ADVGAYF GK+ GKTKLS  +      SPNKT+EG  GG+A S +  T GARL+RWP WW TGPAYG M+  +GL+GDLT S+FKRDAG KD+G++LPGHGG LDRVDSY+ TA P Y FVK I
Sbjct:  401 ADVGAYFTGKNFGKTKLSEATGIT--ISPNKTVEGFFGGVALSCVFMTTGARLMRWPIWWLTGPAYGFMISSLGLLGDLTVSLFKRDAGVKDTGNVLPGHGGLLDRVDSYLLTAMPVYYFVKFI 522          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig94039.21000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBQ1_9PHAE1.400e-7999.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CA52_9STRA1.450e-5670.99Phosphatidate cytidylyltransferase n=1 Tax=Tribone... [more]
W7U3H9_9STRA1.860e-5164.89Phosphatidate cytidylyltransferase n=2 Tax=Monodop... [more]
A0A0G4EIK6_VITBC5.250e-4764.89Phosphatidate cytidylyltransferase n=1 Tax=Vitrell... [more]
A0A7R9UDX9_9STRA3.170e-4668.85Phosphatidate cytidylyltransferase n=1 Tax=Pinguio... [more]
A0A7S0VRI1_9CRYP6.070e-4666.13Phosphatidate cytidylyltransferase n=1 Tax=Hemisel... [more]
A0A7S2MB99_9STRA9.480e-4557.69Phosphatidate cytidylyltransferase n=1 Tax=Skeleto... [more]
A0A482SP91_9ARCH1.000e-4462.90Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2S7M6_9STRA4.420e-4460.00Phosphatidate cytidylyltransferase n=1 Tax=Eucampi... [more]
A0A7S0TS08_HEMAN4.510e-4464.52Phosphatidate cytidylyltransferase n=3 Tax=Hemisel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig94039contigEcto-sp13_S_contig94039:1..396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score258.1
Seed ortholog evalue2.3e-66
Seed eggNOG ortholog2880.D7FLN3
Model size396
KEGG rclassRC00002,RC00055,RC00523
KEGG koko:K00981,ko:K14163
KEGG ReactionR01799,R03661,R05578
KEGG Pathwayko00564,ko00860,ko00970,ko01100,ko01110,ko01120,ko04070,map00564,map00860,map00970,map01100,map01110,map01120,map04070
KEGG ModuleM00093,M00121,M00359
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009165,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0016020,GO:0016024,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0034654,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046341,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0055035,GO:0055086,GO:0070567,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons1
EggNOG free text desc.phosphatidate cytidylyltransferase activity
EggNOG OGsCOG0575@1,KOG1440@2759
Ec32 ortholog descriptionPhosphatidate cytidylyltransferase
Ec32 orthologEc-17_000480.1
EC2.7.7.41,6.1.1.15,6.1.1.17
Cds size396
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464208.1780076-CDS-Ecto-sp13_S_contig94039:0..3961681464208.1780076-CDS-Ecto-sp13_S_contig94039:0..396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig94039 1..396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig94039.21000.1prot_Ecto-sp13_S_contig94039.21000.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig94039 1..396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig94039.21000.1

>prot_Ecto-sp13_S_contig94039.21000.1 ID=prot_Ecto-sp13_S_contig94039.21000.1|Name=mRNA_Ecto-sp13_S_contig94039.21000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
ADVGAYFVGKSLGKTKLSAVSPAAGYASPNKTIEGLLGGLAASSLAATVG
ARLLRWPAWWATGPAYGAMLCLVGLVGDLTASVFKRDAGFKDSGSLLPGH
GGYLDRVDSYIFTAPPAYIFVKLILPLAAKLV
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mRNA from alignment at Ecto-sp13_S_contig94039:1..396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig94039.21000.1 ID=mRNA_Ecto-sp13_S_contig94039.21000.1|Name=mRNA_Ecto-sp13_S_contig94039.21000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig94039:1..396+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGACGTGGGCGCGTACTTCGTGGGCAAGTCCCTGGGCAAGACGAAGCT GTCGGCGGTGAGCCCGGCGGCGGGCTACGCTTCCCCCAACAAGACCATCG AGGGTCTCCTTGGTGGCCTAGCGGCCTCGTCGCTCGCTGCAACCGTCGGC GCCCGCCTGCTAAGGTGGCCGGCGTGGTGGGCAACGGGGCCCGCCTACGG CGCGATGCTGTGCCTCGTAGGCCTTGTGGGGGATCTCACTGCGTCGGTTT TTAAGCGGGACGCCGGGTTCAAGGATTCGGGGAGCTTGCTGCCGGGACAT GGGGGGTACCTCGACCGCGTGGACAGCTACATATTCACGGCGCCCCCGGC GTACATCTTCGTGAAGTTGATTCTTCCTCTGGCCGCGAAGCTCGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig94039:1..396+

>mRNA_Ecto-sp13_S_contig94039.21000.1 ID=mRNA_Ecto-sp13_S_contig94039.21000.1|Name=mRNA_Ecto-sp13_S_contig94039.21000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig94039:1..396+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGACGTGGGCGCGTACTTCGTGGGCAAGTCCCTGGGCAAGACGAAGCT
GTCGGCGGTGAGCCCGGCGGCGGGCTACGCTTCCCCCAACAAGACCATCG
AGGGTCTCCTTGGTGGCCTAGCGGCCTCGTCGCTCGCTGCAACCGTCGGC
GCCCGCCTGCTAAGGTGGCCGGCGTGGTGGGCAACGGGGCCCGCCTACGG
CGCGATGCTGTGCCTCGTAGGCCTTGTGGGGGATCTCACTGCGTCGGTTT
TTAAGCGGGACGCCGGGTTCAAGGATTCGGGGAGCTTGCTGCCGGGACAT
GGGGGGTACCTCGACCGCGTGGACAGCTACATATTCACGGCGCCCCCGGC
GTACATCTTCGTGAAGTTGATTCTTCCTCTGGCCGCGAAGCTCGTC
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