mRNA_Ecto-sp13_S_contig9396.20993.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9396.20993.1
Unique NamemRNA_Ecto-sp13_S_contig9396.20993.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9396.20993.1 vs. uniprot
Match: A0A6H5L9D3_9PHAE (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9D3_9PHAE)

HSP 1 Score: 399 bits (1024), Expect = 5.000e-128
Identity = 208/245 (84.90%), Postives = 215/245 (87.76%), Query Frame = 1 
Query:    1 MRRLDDGVKAFQRQEKGQGVAPLVFWGEGGVLLPVVPPAQVDARTSPSAVDSNSTDDAIEWEREVERQLKEAGKLLRQQNLHLVTAVAVGSHALLRPEDICPPNFHANDNQDDAPASQHAATTALLRPDGFAGAFQCQEEGNTDSALPGLSGRSFYAPPFDTNGSQDDAPASQHAATALVRPDAFAGAFQCQEEVNADSAPPGSSRRTFYPLLFHTNERKDDAPASQ-PTATALLRPDAFTRAFQ 732
            MRRLDDGVKAFQRQE  QGVAPLVFWGEGGVLLPVVPPAQVDARTSP A  SNSTDDAIEWEREVERQL+EAGKLLRQQN HLVTAVAVGS  LLRP  + PP FH ND+QDDAP SQHA TTALLRPD FAG F+ QEEGNTDSA PGLS R FY PPFDTNGSQDDAPASQHAATAL+RPDAF GAFQCQEEVNADSAPPGSSRRTFYPLLFHTN R+DDAPASQ  TATALL  +AF  AFQ
Sbjct:  804 MRRLDDGVKAFQRQENKQGVAPLVFWGEGGVLLPVVPPAQVDARTSPPA--SNSTDDAIEWEREVERQLEEAGKLLRQQNFHLVTAVAVGSCTLLRPGKVYPPLFHTNDHQDDAPTSQHAVTTALLRPDAFAGTFRSQEEGNTDSAPPGLSRRGFYPPPFDTNGSQDDAPASQHAATALLRPDAFTGAFQCQEEVNADSAPPGSSRRTFYPLLFHTNGRQDDAPASQHTTATALLGSNAFAGAFQ 1046
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BLAST of mRNA_Ecto-sp13_S_contig9396.20993.1 vs. uniprot
Match: D7FHG2_ECTSI (Cyclin D2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG2_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 2.060e-98
Identity = 166/191 (86.91%), Postives = 171/191 (89.53%), Query Frame = 1 
Query:    1 MRRLDDGVKAFQRQEKGQGVAPLVFWGEGGVLLPVVPPAQVDARTSPSAVDSNSTDDAIEWEREVERQLKEAGKLLRQQNLHLVTAVAVGSHALLRPEDICPPNFHANDNQDDAPASQHAATTALLRPDGFAGAFQCQEEGNTDSALPGLSGRSFYAPPFDTNGSQDDAPASQHA-ATALVRPDAFAGAFQ 570
            MRRLDDGVKAFQRQEK QGVAPLVFWGEGGVLLPVVPPAQVDARTSP AVDSNSTDD IEW+REVERQL+EAGKLLRQQNLHLVTAVAVGSHALLRPED+ PP FH N NQDDAPASQHAATTALLRPD F GAFQCQEEGN DSA PG S R+FY   F TNGSQDDAPASQH  ATAL+RPDAFAG FQ
Sbjct:  745 MRRLDDGVKAFQRQEKRQGVAPLVFWGEGGVLLPVVPPAQVDARTSPPAVDSNSTDDTIEWKREVERQLEEAGKLLRQQNLHLVTAVAVGSHALLRPEDVYPPLFHTNGNQDDAPASQHAATTALLRPDAFTGAFQCQEEGNADSAPPGSSRRTFYPLLFHTNGSQDDAPASQHTTATALLRPDAFAGEFQ 935
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BLAST of mRNA_Ecto-sp13_S_contig9396.20993.1 vs. uniprot
Match: A0A6H5JNX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX6_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 3.040e-57
Identity = 110/136 (80.88%), Postives = 114/136 (83.82%), Query Frame = 1 
Query:    1 MRRLDDGVKAFQRQEKGQGVAPLVFWGEGGVLLPVVPPAQVDARTSPSAVDSNSTDDAIEWEREVERQLKEAGKLLRQQNLHLVTAVAVGSHALLRPEDICPPNFHANDNQDDAPASQHAATTALLRPDGFAGAFQ 408
            MRRLDDGVKAFQRQEK QGVAPLVF G GGVLLP VPPA+VDARTSP AVDSNSTDD IEWE EVE QL+EAGKLLRQQNL LVTAVAVGS  LLRP ++ PP FHAN NQDDA ASQH    ALL PD FAGAFQ
Sbjct:  721 MRRLDDGVKAFQRQEKKQGVAPLVFCGGGGVLLPAVPPAEVDARTSPPAVDSNSTDDTIEWEHEVEPQLEEAGKLLRQQNLRLVTAVAVGSCTLLRPGNVYPPLFHANGNQDDATASQHTTAIALLGPDVFAGAFQ 856
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9396.20993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L9D3_9PHAE5.000e-12884.90Cyclin N-terminal domain-containing protein n=1 Ta... [more]
D7FHG2_ECTSI2.060e-9886.91Cyclin D2 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JNX6_9PHAE3.040e-5780.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9396contigEcto-sp13_S_contig9396:3686..4588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size903
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionCyclin-like
Ec32 orthologEc-25_002520.1
Cds size903
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464207.3902402-CDS-Ecto-sp13_S_contig9396:3685..45881681464207.3902402-CDS-Ecto-sp13_S_contig9396:3685..4588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9396 3686..4588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9396.20993.1prot_Ecto-sp13_S_contig9396.20993.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9396 3686..4588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9396.20993.1

>prot_Ecto-sp13_S_contig9396.20993.1 ID=prot_Ecto-sp13_S_contig9396.20993.1|Name=mRNA_Ecto-sp13_S_contig9396.20993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=301bp
MRRLDDGVKAFQRQEKGQGVAPLVFWGEGGVLLPVVPPAQVDARTSPSAV
DSNSTDDAIEWEREVERQLKEAGKLLRQQNLHLVTAVAVGSHALLRPEDI
CPPNFHANDNQDDAPASQHAATTALLRPDGFAGAFQCQEEGNTDSALPGL
SGRSFYAPPFDTNGSQDDAPASQHAATALVRPDAFAGAFQCQEEVNADSA
PPGSSRRTFYPLLFHTNERKDDAPASQPTATALLRPDAFTRAFQYQEEGH
ADSAPPGASRRTFYPLLFHTNGRQNGTLASQYTTATALLGPDAFAGAFQS
*
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mRNA from alignment at Ecto-sp13_S_contig9396:3686..4588-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9396.20993.1 ID=mRNA_Ecto-sp13_S_contig9396.20993.1|Name=mRNA_Ecto-sp13_S_contig9396.20993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9396:3686..4588- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCAGGCTGGACGACGGCGTCAAGGCGTTCCAGCGGCAAGAAAAGGG
GCAGGGCGTTGCACCGCTGGTTTTCTGGGGGGAAGGTGGTGTGCTTCTGC
CCGTGGTCCCACCTGCGCAGGTCGACGCACGCACAAGCCCCTCCGCTGTC
GACAGCAACAGCACCGATGATGCGATCGAGTGGGAGCGTGAGGTCGAACG
GCAACTTAAGGAAGCCGGTAAGCTCTTACGGCAGCAGAACCTTCACTTGG
TGACGGCGGTAGCCGTGGGCAGCCACGCACTTCTGCGGCCGGAGGATATT
TGCCCGCCGAACTTCCACGCCAACGACAACCAGGACGACGCTCCGGCTTC
GCAGCACGCCGCCACCACCGCGTTGCTCAGGCCAGATGGATTCGCGGGGG
CGTTTCAGTGCCAGGAGGAAGGAAACACGGACTCCGCGCTACCGGGTTTG
TCCGGGCGAAGCTTCTACGCGCCACCCTTCGACACCAACGGGAGCCAGGA
CGACGCCCCGGCTTCGCAGCACGCCGCCACCGCGTTGGTCAGGCCGGACG
CATTCGCGGGGGCGTTCCAGTGCCAGGAGGAAGTTAACGCGGACTCCGCG
CCACCGGGTTCTTCAAGGCGAACCTTCTACCCGCTGCTCTTCCACACCAA
CGAGAGGAAGGATGACGCCCCGGCTTCGCAGCCCACCGCCACCGCGTTGC
TTAGGCCGGACGCATTCACGCGTGCGTTTCAGTACCAGGAGGAAGGACAC
GCGGACTCCGCGCCACCGGGTGCCTCCAGGCGAACCTTCTACCCGCTGCT
CTTCCACACCAACGGGAGGCAGAATGGAACCCTGGCTTCGCAGTACACCA
CCGCCACCGCTTTGCTCGGGCCGGATGCATTCGCGGGCGCGTTCCAGTCC
TAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9396:3686..4588-

>mRNA_Ecto-sp13_S_contig9396.20993.1 ID=mRNA_Ecto-sp13_S_contig9396.20993.1|Name=mRNA_Ecto-sp13_S_contig9396.20993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9396:3686..4588- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCAGGCTGGACGACGGCGTCAAGGCGTTCCAGCGGCAAGAAAAGGG
GCAGGGCGTTGCACCGCTGGTTTTCTGGGGGGAAGGTGGTGTGCTTCTGC
CCGTGGTCCCACCTGCGCAGGTCGACGCACGCACAAGCCCCTCCGCTGTC
GACAGCAACAGCACCGATGATGCGATCGAGTGGGAGCGTGAGGTCGAACG
GCAACTTAAGGAAGCCGGTAAGCTCTTACGGCAGCAGAACCTTCACTTGG
TGACGGCGGTAGCCGTGGGCAGCCACGCACTTCTGCGGCCGGAGGATATT
TGCCCGCCGAACTTCCACGCCAACGACAACCAGGACGACGCTCCGGCTTC
GCAGCACGCCGCCACCACCGCGTTGCTCAGGCCAGATGGATTCGCGGGGG
CGTTTCAGTGCCAGGAGGAAGGAAACACGGACTCCGCGCTACCGGGTTTG
TCCGGGCGAAGCTTCTACGCGCCACCCTTCGACACCAACGGGAGCCAGGA
CGACGCCCCGGCTTCGCAGCACGCCGCCACCGCGTTGGTCAGGCCGGACG
CATTCGCGGGGGCGTTCCAGTGCCAGGAGGAAGTTAACGCGGACTCCGCG
CCACCGGGTTCTTCAAGGCGAACCTTCTACCCGCTGCTCTTCCACACCAA
CGAGAGGAAGGATGACGCCCCGGCTTCGCAGCCCACCGCCACCGCGTTGC
TTAGGCCGGACGCATTCACGCGTGCGTTTCAGTACCAGGAGGAAGGACAC
GCGGACTCCGCGCCACCGGGTGCCTCCAGGCGAACCTTCTACCCGCTGCT
CTTCCACACCAACGGGAGGCAGAATGGAACCCTGGCTTCGCAGTACACCA
CCGCCACCGCTTTGCTCGGGCCGGATGCATTCGCGGGCGCGTTCCAGTCC
TAG
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